Table IVA.

Continued

GO Biological ProcessbProbe SetRefSeq IDGene NameModulationcFold Changed
201199_s_atNM_002807Proteasome (prosome, macropain) 26S subunit, non-ATPase, 1D−2.00
204219_s_atNM_002802Proteasome (prosome, macropain) 26S subunit, ATPase, 1D−1.97
200683_s_atNM_003347Ubiquitin-conjugating enzyme E2L 3D−1.93
200988_s_atNM_005789Proteasome (prosome, macropain) activator subunit 3 (PA28 γ Ki)D−1.87
201699_atNM_002806Proteasome (prosome, macropain) 26S subunit, ATPase, 6D−1.83
202151_s_atNM_016172Ubiquitin associated domain containing 1D−1.77
212987_atNM_012347F-box protein 9D−1.71
202038_atNM_004788Ubiquitination factor E4A (UFD2 homolog, yeast)D−1.65
202128_atNM_014821KIAA0317D−1.62
200786_atNM_002799Proteasome (prosome, macropain) subunit, β type, 7D−1.57
201671_x_atNM_005151Ubiquitin specific protease 14 (tRNA-guanine transglycosylase)D−1.46
212576_atNM_015246Mahogunin, ring finger 1D−1.37
208723_atNM_004651Ubiquitin specific protease 11D−1.21
218582_atNM_017824Ring finger protein 153I1.74
201133_s_atNM_014819Praja 2, RING-H2 motif containingI1.97
208980_s_atNM_021009Ubiquitin CI2.07
201881_s_atNM_005744Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1I2.14
221962_s_atNM_003344Ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast)I2.18
208663_s_atNM_003316Tetratricopeptide repeat domain 3I2.34
36564_atNM_153341BR domain containing 3I3.03
  • a The cells were treated as described in Table III.

  • b Four different pathways were selected using the NetAffyx database.

  • c D and I indicate, respectively, whether the gene expression decreases or increases between the experimental point and the baseline (Caco-2 cells alone).

  • d Fold change between the experimental point and baseline in a linear scale.