Table II.

Comparison of the accuracy of the JOINSOLVER consecutive match approach and the V-Base/DNAPLOT alignment scoring systema

Accession NumberVH-JH Distance (bp)JOINSOLVERV-Base/ DNAPLOT
D segmentConsecutive match length (bp)D segmentBLAST scoreConsecutive match length (bp)
Z8036315D3-229D5-12616
Z8036427D2-217None
Z8036927D6-1910None
Z8037229D3-2210D6-13244
Z8038129D3-1610D6-6367
Z8038951D2-213D6-25637
Z8039151D2-213None
Z8041423D2-28D4-17356
Z8047220D1-269D6-19335
Z8047824D1-269D2-15296
Z8047922D1-711D2-08203
Z8048427D3-1013None
Z8048863D2-8 and D3-925 and 24None
Z8049333D1-2628None
Z8050318D3-109D3-16196
  • a One-hundred forty-four random sequences were selected from the 651 sequence database and analyzed for D segment alignment with JOINSOLVER and DNAPLOT.