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MicroRNA-139 Expression Is Dispensable for the Generation of Influenza-Specific CD8+ T Cell Responses

Jennifer L. Hope, Manzhi Zhao, Christopher J. Stairiker, Caoimhe H. Kiernan, Alison J. Carey, Yvonne M. Mueller, Marjan van Meurs, Inge Brouwers-Haspels, Dennis C. Otero, Eun-Ah Bae, Hannah A. Faso, Alex Maas, Hans de Looper, Paolo M. Fortina, Isidore Rigoutsos, Linda M. Bradley, Stefan J. Erkeland and Peter D. Katsikis
J Immunol February 1, 2022, 208 (3) 603-617; DOI: https://doi.org/10.4049/jimmunol.2000621
Jennifer L. Hope
*Department of Immunology, Erasmus University Medical Center, Rotterdam, the Netherlands;
†Department of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA;
‡Aging, Cancer and Immuno-oncology Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA;
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Manzhi Zhao
*Department of Immunology, Erasmus University Medical Center, Rotterdam, the Netherlands;
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Christopher J. Stairiker
*Department of Immunology, Erasmus University Medical Center, Rotterdam, the Netherlands;
†Department of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA;
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Caoimhe H. Kiernan
*Department of Immunology, Erasmus University Medical Center, Rotterdam, the Netherlands;
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Alison J. Carey
†Department of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA;
§Department of Pediatrics, Drexel University College of Medicine, Philadelphia, PA;
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Yvonne M. Mueller
*Department of Immunology, Erasmus University Medical Center, Rotterdam, the Netherlands;
†Department of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA;
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Marjan van Meurs
*Department of Immunology, Erasmus University Medical Center, Rotterdam, the Netherlands;
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Inge Brouwers-Haspels
*Department of Immunology, Erasmus University Medical Center, Rotterdam, the Netherlands;
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Dennis C. Otero
‡Aging, Cancer and Immuno-oncology Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA;
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Eun-Ah Bae
‡Aging, Cancer and Immuno-oncology Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA;
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Hannah A. Faso
‡Aging, Cancer and Immuno-oncology Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA;
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Alex Maas
¶Department of Cell Biology, Erasmus University Medical Center, Rotterdam, the Netherlands;
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Hans de Looper
‖Department of Hematology, Erasmus University Medical Center, Rotterdam, the Netherlands;
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Paolo M. Fortina
#Department of Cancer Biology, Thomas Jefferson University, Philadelphia, PA; and
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Isidore Rigoutsos
**Computational Medicine Center, Thomas Jefferson University, Philadelphia, PA
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Linda M. Bradley
‡Aging, Cancer and Immuno-oncology Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA;
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Stefan J. Erkeland
*Department of Immunology, Erasmus University Medical Center, Rotterdam, the Netherlands;
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Peter D. Katsikis
*Department of Immunology, Erasmus University Medical Center, Rotterdam, the Netherlands;
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Key Points

  • miR-139 is downregulated in CD8+ T cells in response to TCR stimulation.

  • miR-139 is not required for anti-influenza CTL responses.

  • miR-139 is required for anti–Listeria monocytogenes CTL responses.

Abstract

MicroRNAs (miRNAs/miRs) are small, endogenous noncoding RNAs that are important post-transcriptional regulators with clear roles in the development of the immune system and immune responses. Using miRNA microarray profiling, we characterized the expression profile of naive and in vivo generated murine effector antiviral CD8+ T cells. We observed that out of 362 measurable mature miRNAs, 120 were differentially expressed by at least 2-fold in influenza-specific effector CD8+ CTLs compared with naive CD8+ T cells. One miRNA found to be highly downregulated on both strands in effector CTLs was miR-139. Because previous studies have indicated a role for miR-139–mediated regulation of CTL effector responses, we hypothesized that deletion of miR-139 would enhance antiviral CTL responses during influenza virus infection. We generated miR-139−/− mice or overexpressed miR-139 in T cells to assess the functional contribution of miR-139 expression in CD8+ T cell responses. Our study demonstrates that the development of naive T cells and generation or differentiation of effector or memory CD8+ T cell responses to influenza virus infection are not impacted by miR-139 deficiency or overexpression; yet, miR-139−/− CD8+ T cells are outcompeted by wild-type CD8+ T cells in a competition setting and demonstrate reduced responses to Listeria monocytogenes. Using an in vitro model of T cell exhaustion, we confirmed that miR-139 expression similarly does not impact the development of T cell exhaustion. We conclude that despite significant downregulation of miR-139 following in vivo and in vitro activation, miR-139 expression is dispensable for influenza-specific CTL responses.

Footnotes

  • This work was supported in part by funding for a Ph.D. fellowship to M.Z. provided by the China Scholarship Council (201506160120); a grant awarded by Worldwide Cancer Research (16-1153) to P.D.K.; funds from Thomas Jefferson University; funds from the College of Medicine, Drexel University, Department of Microbiology and Immunology; and funds from Erasmus Medisch Centrum, Department of Immunology, and Erasmus MC Foundation – Daniel den Hoed.

  • J.L.H. performed influenza infections, in vitro assays, adoptive transfers, and flow cytometry; M.Z. developed and performed in vitro T cell exhaustion assays and flow cytometry; C.H.K. and C.J.S. performed retroviral transductions, infections, and flow cytometry; A.J.C., M.v.M., and I.B.-H. performed infections, flow cytometry, qRT-PCR, and mouse breeding; D.C.O., E.-A.B., H.A.F., and L.M.B. designed and performed Listeria monocytogenes–OVA experiments; Y.M.M. performed adoptive transfers and cell sorting; A.M., H.d.L., and S.J.E. generated miR-139 knockout mice; S.J.E. and C.J.S. generated the miR-139 OE plasmid; P.M.F. and I.R. provided expert guidance for the design and completion of the microarray profiling; J.L.H. and P.D.K. were responsible for study design; J.L.H., M.Z., and P.D.K. were responsible for data analysis and manuscript authorship; all authors discussed the results and commented on the manuscript.

  • The online version of this article contains supplemental material.

  • Abbreviations used in this article

    APL
    altered peptide ligand
    Eomes
    Eomesodermin
    FDR
    false discovery rate
    ICL
    interstrand cross-link
    LCMV
    lymphocytic choriomeningitis virus
    LM
    Listeria monocytogenes
    MFI
    median fluorescence intensity
    miRNA/miR
    microRNA
    MLN
    mediastinal lymph node
    OE
    overexpression
    PFA
    paraformaldehyde
    qRT-PCR
    quantitative real-time PCR
    sgRNA
    single-guide RNA
    TCF-1
    T cell-specific factor-1
    WSN-OVA
    Wilson Smith Neurotropic/33 expressing OVA(257-264)
    WT
    wild type

  • Received June 10, 2020.
  • Accepted November 15, 2021.
  • Copyright © 2022 by The American Association of Immunologists, Inc.
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The Journal of Immunology: 208 (3)
The Journal of Immunology
Vol. 208, Issue 3
1 Feb 2022
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MicroRNA-139 Expression Is Dispensable for the Generation of Influenza-Specific CD8+ T Cell Responses
Jennifer L. Hope, Manzhi Zhao, Christopher J. Stairiker, Caoimhe H. Kiernan, Alison J. Carey, Yvonne M. Mueller, Marjan van Meurs, Inge Brouwers-Haspels, Dennis C. Otero, Eun-Ah Bae, Hannah A. Faso, Alex Maas, Hans de Looper, Paolo M. Fortina, Isidore Rigoutsos, Linda M. Bradley, Stefan J. Erkeland, Peter D. Katsikis
The Journal of Immunology February 1, 2022, 208 (3) 603-617; DOI: 10.4049/jimmunol.2000621

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MicroRNA-139 Expression Is Dispensable for the Generation of Influenza-Specific CD8+ T Cell Responses
Jennifer L. Hope, Manzhi Zhao, Christopher J. Stairiker, Caoimhe H. Kiernan, Alison J. Carey, Yvonne M. Mueller, Marjan van Meurs, Inge Brouwers-Haspels, Dennis C. Otero, Eun-Ah Bae, Hannah A. Faso, Alex Maas, Hans de Looper, Paolo M. Fortina, Isidore Rigoutsos, Linda M. Bradley, Stefan J. Erkeland, Peter D. Katsikis
The Journal of Immunology February 1, 2022, 208 (3) 603-617; DOI: 10.4049/jimmunol.2000621
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