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Development of Neutralizing Multimeric Nanobody Constructs Directed against IL-13: From Immunization to Lead Optimization

Philippe J.-L. Y. Gevenois, Pieter De Pauw, Steve Schoonooghe, Cédric Delporte, Thami Sebti, Karim Amighi, Serge Muyldermans and Nathalie Wauthoz
J Immunol November 15, 2021, 207 (10) 2608-2620; DOI: https://doi.org/10.4049/jimmunol.2100250
Philippe J.-L. Y. Gevenois
*Unit of Pharmaceutics and Biopharmaceutics, Free University of Brussels, Faculty of Pharmacy, Brussels, Belgium;
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Pieter De Pauw
†Laboratory of Cellular and Molecular Immunology, Free University of Brussels, Ixelles, Belgium;
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Steve Schoonooghe
‡Flemish Institute for Biotechnology Nanobody Core, Free University of Brussels, Brussels, Belgium;
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Cédric Delporte
§Unit of Pharmacognosy, Bioanalysis and Drug Discovery, RD3 and Analytical Platform of the Faculty of Pharmacy, Free University of Brussels, Brussels, Belgium; and
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Thami Sebti
¶S.M.B. Laboratories, Brussels, Belgium
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Karim Amighi
*Unit of Pharmaceutics and Biopharmaceutics, Free University of Brussels, Faculty of Pharmacy, Brussels, Belgium;
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Serge Muyldermans
†Laboratory of Cellular and Molecular Immunology, Free University of Brussels, Ixelles, Belgium;
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Nathalie Wauthoz
*Unit of Pharmaceutics and Biopharmaceutics, Free University of Brussels, Faculty of Pharmacy, Brussels, Belgium;
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Key Points

  • Anti–IL-13 nanobodies can be generated using a standard immunization protocol.

  • Nanobodies can be easily engineered in a multimeric format.

  • Mutiparatopic nanobodies allow better inhibition than multivalent ones.

Abstract

IL-13 is a pleiotropic cytokine mainly secreted by Th2 cells. It reacts with many different types of cells involved in allergy, inflammation, and fibrosis, e.g., mastocytes, B cells, and fibroblasts. The role of IL-13 in conditions involving one or several of these phenotypes has therefore been extensively investigated. The inhibition of this cytokine in animal models for various pathologies yielded highly promising results. However, most human trials relying on anti–IL-13 conventional mAbs have failed to achieve a significant improvement of the envisaged disorders. Where some studies might have suffered from several weaknesses, the strategies themselves, such as targeting only IL-13 using conventional mAbs or employing a systemic administration, could be questioned. Nanobodies are recombinant Ag-binding fragments derived from the variable part of H chain–only Abs occurring in Camelidae. Thanks to their single-domain structure, small size (≈15 kDa), good stability, and solubility, they can be engineered into multispecific constructs for combined therapies or for use in new strategies such as formulations for local administration, e.g., pulmonary administration. In this study, we describe the generation of 38 nanobodies that can be subdivided into five CDR3 families. Nine nanobodies were found to have a good affinity profile (KD = 1–200 nM), but none were able to strongly inhibit IL-13 biological activity in vitro (IC50 > 50 µM: HEK-Blue IL-13/IL-4 cells). Multimeric constructs were therefore designed from these inhibitors and resulted in an up to 36-fold improvement in affinity and up to 300-fold enhancement of the biological activity while conserving a high specificity toward IL-13.

This article is featured in Top Reads, p.

Footnotes

  • This work was supported by Laboratoires S.M.B., owner of the nanobodies described in this paper. This work was also supported by the Fonds National pour la Recherche Scientifique (Grant ASP907174).

  • Abbreviations used in this article

    Cat.
    catalog
    EC75
    75% effective concentration
    HEK
    human embryonic kidney
    m/z
    mass–charge ratio
    Nb
    nanobody
    PBST
    PBS supplemented with 0.05% (v/v) Tween 20
    Q-TOF
    quadrupole time of flight
    SEC
    size-exclusion chromatography; VIB, Flemish Institute for Biotechnology

  • Received March 22, 2021.
  • Accepted September 16, 2021.
  • Copyright © 2021 by The American Association of Immunologists, Inc.
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The Journal of Immunology: 207 (10)
The Journal of Immunology
Vol. 207, Issue 10
15 Nov 2021
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Development of Neutralizing Multimeric Nanobody Constructs Directed against IL-13: From Immunization to Lead Optimization
Philippe J.-L. Y. Gevenois, Pieter De Pauw, Steve Schoonooghe, Cédric Delporte, Thami Sebti, Karim Amighi, Serge Muyldermans, Nathalie Wauthoz
The Journal of Immunology November 15, 2021, 207 (10) 2608-2620; DOI: 10.4049/jimmunol.2100250

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Development of Neutralizing Multimeric Nanobody Constructs Directed against IL-13: From Immunization to Lead Optimization
Philippe J.-L. Y. Gevenois, Pieter De Pauw, Steve Schoonooghe, Cédric Delporte, Thami Sebti, Karim Amighi, Serge Muyldermans, Nathalie Wauthoz
The Journal of Immunology November 15, 2021, 207 (10) 2608-2620; DOI: 10.4049/jimmunol.2100250
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