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* State Key Laboratory of Biocontrol, Guangdong Province Key Laboratory for Pharmaceutical Functional Genes, College of Life Sciences, Sun Yat-sen (Zhongshan) University, Guangzhou, Peoples Republic of China; and
Institute of Reproductive Immunology, Jinan University, Guangzhou, Peoples Republic of China
| Abstract |
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| Introduction |
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gC1q domain was also found in many noncomplement proteins that have similar crystal structure to that of the multifunctional TNF ligand family, and also have diverse functions (2). C1qTNF-related protein 1 (CTRP1) was a vascular wall protein that inhibited collagen-induced platelet aggregation by blocking von Willebrand factor binding to collagen (3). CaOC1q-like factor, a novel member of C1q family from color crucian carp Carassius auratus, was identified to be specifically expressed in the ovary (4). The other members of this family, such as adiponectin, G protein couples receptor-interacting protein, also play important roles in energy homeostasis and signal transduction (5, 6, 7).
However, agnathans lamprey C1q emerged as a lectin and functioned as an initial recognition molecule, which led the C1q be related with the lectin pathway and the innate immunity (8). This finding prompted us to investigate its homologue in a more primitive species. Cephalochordate amphioxus represent the most basal extant chordate lineage (9). Based on analyzing the genome of this species, we have found that there are 50 C1q domain-containing gene models in its genome (10), in contrast to 29 in human and 5 in sea urchin (11). In the present work, we have cloned and identified one member of C1q family, and named it as AmphiC1q1, from amphioxus, which occupies crucial positions in the animal evolution tree. Moreover, AmphiC1q1 is the most primitive form of this family reported to date. This study can help us understand the evolution of the C1q family and eventual formation of mammalian homologue.
| Materials and Methods |
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Adults of Chinese amphioxus (Branchiostoma belcheri tsingtauense) were obtained from Qingdao, China. Animals were kept in large vessels with aeration and supplied with fresh seawater and plankton daily. In breeding seasons, blastula, gastrula, neurula, and larva were collected. Tissues were separated under optical microscope. Live Vibrio vulnificus (G–), Vibrio parahaemolyticus (G–), and Staphylococcus aureus (G+) PBS suspension (15 µl/animal, 109 CFU/µl); LPS from Escherichia coli 0111:B4 (Sigma-Aldrich); and lipoteichoic acid from S. aureus (Sigma-Aldrich) PBS suspension (15 µl/animal, 1 mg/ml) were injected into the coelom of amphioxus. PBS was injected as the negative control. Twenty random samples of each treatment were collected after 48-h injection and frozen by liquid nitrogen as experimental samples.
Isolation of full-length AmphiC1q1 cDNA and genome
A partial cDNA fragment of AmphiC1q1 was isolated by degenerate olignucleotide-based PCR cloning with primers 5'-GG(A/G)GAACG(C/G/A)GGGT T(C/T)CCT-3' (forward) and 5'-AAC(T/C)AAATGICCATT(G/A)AAGGTG-3' (reverse), and total RNA of adult animal was extracted as templates. To obtain a complete cDNA sequence, 3' and 5' RACE were performed using the GeneRACE Kit (Invitrogen), according to the manufacturers instructions, with gene-specific primers (5'-GSP1, 5'-GCTGCGAATG-ACAGAGAAGGCTGAT-3'; 5'-GSP2, 5'-CTTGGGTCCAGGAGGTCCAGCAACA-3'; 3'-GSP1, 5'-CGCAGCATCATGCAGTCCCAGA-3'; and 3'-GSP2, 5'-GACCAGGTATGGATGAGGATGGACTA-3'). The amplified fragments were cloned into the pGEX-T easy vector (Promega) and sequenced by the PerkinElmer ABI Prism 3730 DNA sequencer. Primers 5'-TCAGCAGCAGTCCCACCAT-3' (forward) and 5'GATTTGTAGTCACAACAGAGG-3' (reverse) were used to amplify the full-length cDNA and genomic sequences. The PCR products were cloned into pGEM-T easy vector and sequenced.
Southern blot hybridization of genomic DNA
For each lane, 20 µg of digested genomic DNA from adult animals was fractionated by 0.8% agarose gel electrophoresis and transferred to Hybond N+ nylon membrane (Amersham Biosciences). A 417-bp cDNA probe of gC1q domain was amplified by primers 5'-CCACCAGAGAAACTCCAGGC-3' (forward) and 5'-CGTGGGGAAAACTAAATGTCCA-3' (reverse), and then labeled with the digoxigenin DNA Labeling System Kit (Roche). After overnight hybridization and stringency washing, the nylon membranes were immunodetected according to the protocol.
Alignment and phylogenetic analysis
Clustalw 1.83 was used in multiple sequence alignments. Alignments were edited and refined with GeneDoc software. Phylogenetic trees were built with Mega v3.1. Minimum-evolution (ME) method was used to calculate trees with 1000 bootstrap tests. The draft genome sequence of amphioxus Branchiostoma floridae and the corresponding gene predictions, annotations, searching, and downloading services can be accessed on the website http://genome.jgi-psf.org/Brafl1/Brafl1.home.html. Other sequences used in the alignment and phylogenetic analyses were extracted from GenBank and Ensemble.
PCR analysis of the AmphiC1q1 gene expression patterns
RT-PCR and real-time PCR were performed as the method described (12). A total of 40 cycles was performed with the primers 5'-CCTGGCGGTCAGCATCTATGG-3' and 5'-CCTGGTGGGTTGTCTTGTGGG-3'. All samples were analyzed in three duplications, and the results were expressed as relative fold of one sample in each experiment and as mean ± SD.
Section in situ hybridization
Adult amphioxus was cut into three to four pieces, and fixed in 4% paraformaldehyde in MOPS buffer at room temperature for 2 h or at 4°C overnight, dehydrated in gradated ethanol, and stored in 70% ethanol at –20°C for embedding in paraffin. Then the embedded tissue blocks were cut into 8 µm. Following deparaffinization, the sections were rehydrated, absterged, and proteinase K digested, respectively. Digoxigenin-labeled sense and antisense probes synthesized with full-length AmphiC1q1 cDNA were added respectively at a concentration of 1 µg/ml, and the section was hybridized overnight at 42°C. After high stringency washing, sections were immunodetected by NBT/5-bromo-4-chloro-3-indolyl phosphate stock solution (Roche).
Construction of expression vectors and preparation of recombinant proteins
Full-length AmphiC1q1 molecule without signal peptide and its gC1q domain protein were expressed as fusion proteins with the thioredoxin (TRX) fusion system containing a 6x His tag to facilitate the purification of fusion proteins on a Ni2+ chelating Sepharose column and partner TRX to help the proteins fold correctly. Specific cDNA sequence encoding the mature protein encompassing amino acids Val17 to Met251 was amplified with the primers 5'-GGGGTACCGACGACGACGACAAAGTCAGCATCTATGGCCAGGG-3' (forward) and 5'-ATAAGAATGCGGCCGCTCACATGTTATACGTGGGGAAAA-3' (reverse), whereas gC1q domain encompassing amino acids Pro110 to Thr248 was amplified with the primers 5'-GGGGTACCGACGACGACGACAAACCACCAGAGAAACTCCAGGC-3' (forward) and 5'-ATAAGAATGCGGCCGCTTATTACGTGGGGAAAACTAAATGTCCA-3' (reverse). KpnI and NotI endonuclease sites (underlined) were included at the 5' ends of the forward and reverse primer, and the enterokinase site (italics) was followed with the KpnI endonuclease site, respectively. Two stop codons were added following the NotI endonuclease site in the reverse primer of the gC1q. The amplified fragments were inserted into pTRX between the two sites, and the expression plasmids were introduced into E. coli Rosetta-gami with additions of 50 mg/L ampicillin, 15 mg/L kanamycin, 35 mg/L chloramphenicol, and 12.5 mg/L tetracycline. The 2xYT with identical antibiotics was inoculated overnight with a transformed positive clone at 37°C. When the absorbance at 600 nm reached a value of 0.6, ispropylthiogalactoside was added to a final concentration of 0.2 mM and the cultures were allowed to rock for 36 h at 12°C. The bacteria were harvested by centrifugation at 5000 x g for 10 min. Cell pellets were resuspended and disrupted using a sonicator in TBS (pH 8.5 for AmphiC1q1-FL, and pH 7.5 for AmphiC1q1-gC1q) containing 150 mM NaCl. After addition of Triton X-100 to a final concentration of 1%, the suspensions were mixed gently for 30 min to solubilize the fusion protein. The supernatant of the recombinant protein was applied to a Ni2+ chelating Sepharose column, pooled by elution with 150 mM imidazole. The purified recombinant proteins were desalted to their corresponding TBS with G-25 column concentrated by filtration through an ULTRAFREE centrifugal filter device (Millipore). The concentrated proteins were also analyzed by gel filtration on Sephacryl S300 (Amersham Biosciences). Protein concentration was determined using a Bio-Rad protein assay dye reagent and BSA as a standard. The TRX protein was purified with the same method.
Identification of the possible ligands for lectin of AmphiC1q1
Excess AmphiC1q1-FL was incubated overnight with 10 µl of N-acetyl-glucosamine (GlcNAc) Sepharose 4B at 4°C by gentle rocking in the presence or absence of 10 mM CaCl2. The beads washed stringently with TBS (with or without 10 mM CaCl2) were then suspended with 10 µl of reducing sample buffer quickly and denatured by heating at 100°C for 15 min. Then the supernatant was subjected to 15% SDS-PAGE and analyzed by immunoblotting. Briefly, proteins separated by SDS-PAGE were transferred to nitrocellulose membrane and detected with a mouse anti-His mAb and HRP-labeled anti-mouse IgG Ab.
Hemagglutinating activity of AmphiC1q1-FL was tested on trypsin-treated glutaraldehyde-fixed rabbit erythrocytes, as described (12). Rabbit erythrocytes (2%, v/v) were prepared in TBS. Hemagglutination activity was measured in 96-well microtiter plate with V-shaped well bottoms with excess purified recombinant proteins in the presence or absence of 10 mM CaCl2. Protein that induced visible hemagglutination was recorded as possessing hemagglutinating activity.
Binding of AmphiC1q1 and its gC1q domain protein to the microbial components was performed by ELISA and pull-down assay, as described (12). Briefly, 20 µg of LPS, lipoteichoic acid, peptidoglycan from S. aureus (Fluka), glucan from Saccharomyces cerevisiae (Sigma-Aldrich), and mannan from S. cerevisiae (Sigma-Aldrich) were used to coat 96-well microtiter plate (Corning Glass) in PBS (pH 7.3) overnight at 4°C. Peptidoglycan and glucan are ultrasonically solubilized. Nonspecific binding to the wells was prevented by the addition of PBS containing 3% BSA overnight at 4°C. Several concentrations of targeted proteins were then added to the wells in the presence of 10 mM CaCl2 and incubated for 1 h at room temperature. Bound proteins were detected with His mAb and HRP-labeled IgG. Between each incubation step, unbound protein, His mAb, or HRP-labeled anti-mouse IgG was washed off five times. Color was developed by adding 3,3',5,5'-tetramethylbenzidine liquid substrate, and the absorbance was read at 450 nm. The assay was repeated five more times with similar procedures.
Platelet aggregation assay
Collagen-induced platelet aggregation was performed using human platelet-rich plasma (PRP). AmphiC1q1 proteins were mixed with PRP by gentle rocking in a 96-well flat-bottom plate. Collagen I and thrombin were added at a final concentration of 1.25 µg/ml, the plate was agitated at 37°C on the microplate reader, and turbidity was monitored as percentage of light transmitted at 632 nm after 21.5 min.
| Results |
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To identify the C1q in Chinese amphioxus, B. b. tsingtaunese, we designed the degenerate primers according to the C1q sequences of lamprey, which was the most relative species to amphioxus with mRNA sequence available, to amplify the homologous gene. After amplification, we cloned and sequenced the full-length cDNA of AmphiC1q1 with 903 bp long (accession FJ154078), which contained an open reading frame of 756 bp encoding a 251-aa protein (Fig. 1). The deduced protein sequence contained a 16-aa signal peptide, a collagen-like sequence with 13 Gly-Xaa-Yaa repeats, and a C-terminal 137-aa gC1q domain. AmphiC1q1 shared the highest identity (51%) at the amino acid level with human C1q and TNF-related protein 1 (CTRP1 or cqt1), which was a novel member of the C1qTNF-related protein family containing characteristic collagen and TNF
-like gC1q domains with
135 aa, and showed marked expression in vascular wall tissues. The gC1q domain in the deduced protein was more similar to the corresponding gC1q domain of G protein couples receptor-interacting protein and cqt1 (57% identity) from Homo sapiens, whereas other similar gC1q domain had lower identities to the molecules such as C1q and TNF-related protein 4 (cqt4) (38% identity), complement component 1 chain A (34% identity), adiponectin (33% identity), and cerebellin 1 (33% identity).
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During the course of evolution, C1q family proteins had entrenched themselves into various functional roles by variation of critical amino acids as well as associating with other taxonomic domains. Amphioxus genome encoded 50 gC1q gene models (10), in contrast to 29 in human and 5 in sea urchin. In addition, 42 of 50 amphioxus C1q-like genes adopted the typical CLR + gC1q architecture, and 33 of them encoded half of collagen and the entire gC1q domains in the same exon, just like AmphiC1q1. In amphioxus, the gC1q domain was also paired to a transmembrane region, which could be seen in higher vertebrate except aves. The pairing of PRY, BBOX, and RING domains with the gC1q domain seemed to be restricted to the ray-finned fishes and amphioxus only (Fig. 4A). PRY, BBOX, and RING domains were frequently associated with the pyrin domain (an Ig-like domain), which was a protein-protein interaction motif, and belonged to a family comprising death, death effector, and caspase recruitment domains. These results indicated that this domain architecture of C1q family proteins played an important role in innate immunity.
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Expression patterns of AmphiC1q1
The expression of AmphiC1q1 during the embryonic development was investigated by real-time PCR. The mRNA expressions of AmphiC1q1 gradually arise along with the embryonic development, except at blastula stage (Fig. 5A). The abundant AmphiC1q1 expression in mid-blastula stage was consistent with the zygotic gene expression initiated at mid-blastula stage. After activation in mid-blastula stage, the AmphiC1q1 mRNA expression decreased to a low level in early gastrula stage. From early gastrula stage to adult, the gradual increase of the mRNA expression suggested that the AmphiC1q1 might play important roles in the embryogenesis.
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AmphiC1q1 does not function as lamprey LC1q
It has been reported that the C1q of lamprey was emerged as a GlcNAc-binding lectin and functioned as an initial recognition molecule of the complement system in innate immunity (8). To identify whether AmphiC1q1 could function as lamprey LC1q or not, we obtained the recombinant proteins with pTRX fusion expression system in E. coli Rosetta-gami (Fig. 7, A and B) and the molecular mass of fusion recombinant proteins were 38 kDa for AmphiC1q1-FL and 28.8 kDa for its gC1q domain under reducing conditions. Under nonreducing conditions, the 38-kDa AmphiC1q1-FL fusion protein migrated to three fractions, mainly at
76 kDa, slightly at
152 kDa, and >175 kDa (Fig. 7C). To further establish its multimeric nature, this protein was subjected to gel filtration by using Sephacryl S300. This 38-kDa protein was separated to three peaks: the first and second peak were low in quantity, corresponding to fractions
at 660 and 152 kDa, and the fraction of the biggest peak was at 76 kDa (Fig. 7, D and E). The gel filtration and nonreducing PAGE gave the same result, indicating that AmphiC1q1-FL fusion protein formed dimer (76 kDa), tetramer (152 kDa), and multimer (
660 kDa) under the nondenaturing conditions, and the dimer pattern was the major type of this protein.
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AmphiC1q1 can bind LPS, but do not possess hemagglutinating activity
To investigate whether AmphiC1q1 could interact with other ligands for lectin except GlcNAc, we examined the hemagglutinating activity of the recombinant AmphiC1q1 protein with rabbit erythrocytes. As the positive control, AmphiCTL1 could induce strong hemagglutination in the presence of calcium (12), but AmphiC1q1 could not even with addition of excess targeted protein in the presence or absence of calcium. This result indicated that AmphiC1q1 did not possess hemagglutinating activity, nor did it recognize those glycan exposed on the surface of rabbit erythrocytes.
Interestingly, mannose-binding lectin, one of the principal lectins in humans, possesses no hemagglutinating properties, but can bind with the components of the microorganism to activate the complement pathway (17). Mammalian C1q binds not only to Igs, but also to other substances, such as C-reactive protein and endotoxins, resulting in complement activation (1). To examine whether AmphiC1q1 could bind with other components existing in the microbes, we used the ELISA to analyze the interaction between AmphiC1q1 protein and several microbial components such as LPS, lipoteichoic acid, peptidoglycan, mannan, and glucan. As shown in Fig. 8, in the presence of calcium, AmphiC1q1-FL and its gC1q domain proteins could interact with LPS, whereas both proteins had no binding activities with other components. And the pull-down assay also demonstrated that those targeted proteins did not bind with peptidoglycan and glucan (data not shown).
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Considering the possibility that CTRP1, which shared the highest homology with AmphiC1q1, could inhibit collagen-induced platelet aggregation (3), we performed a similar test for AmphiC1q1. Incubation of PRP with fibrillar collagen type I and thrombin produced a rapid aggregation of platelets, as described (3). AmphiC1q1 virtually completely inhibited the aggregation of platelets induced by fibrillar collagen type I, but not to thrombin. However, the truncated gC1q domain protein had no significant effects on aggregation of platelets by collagen type I and thrombin (Fig. 9).
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| Discussion |
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Amphioxus represents the most basal extant chordate lineage (9), and hence, constitutes an important reference to study the immunity evolution. To date, there is little functional information for the complement system of amphioxus, except for a few reports on the presence of C3, C6 (22), mannose-binding lectin-associated serine protease 1/3 (23), Bf/C2 (24), and complement-like activity in the humoral fluid (25). From the phylogenomic perspective, amphioxus appeared to have a sophisticated complement system full of amphioxus-specific novelties (10). Although it has been demonstrated that the lectin pathway and alternative pathway were present in the amphioxus (23), there was no evidence as yet of the presence of C1q-mediated complement system.
We have identified 50 C1q-domain-containing molecules from the draft genome of B. florida, in contrast to 29 in human (10). However, no orthologous C1q gene involved in complement activation was identified in amphioxus draft genome. Before the genome data of B. florida was released, we have amplified an amphioxus C1q molecule, AmphiC1q1, by degenerate primers designed according to lamprey LC1q from B. b. tsingtauense. The phylogenetic analysis indicated that AmphiC1q1 was a primitive representative of subfamily cqt1/6/8, outside of the clade of the C1q involved in complement activation. Functional experiments of the recombinant AmphiC1q1 protein demonstrated that it did not possess the same function as lamprey LC1q, such as recognizing GlcNAc, but this protein could specifically bind LPS, corresponding well with high expression of this gene after challenge with LPS and two kinds of Gram-negative bacteria. These data indicated that AmphiC1q1 might also be involved in the innate immune system of amphioxus in a manner different from the lamprey LC1q, though whether it mediated complement activity or not was still unknown. However, there were many reports that C1q interacted with LPS derived from a number of Gram-negative bacteria via its CLR and/or gC1q domain to activate complement system (26, 27). The interaction between AmphiC1q1 and LPS existed in the most primitive chordate amphioxus, like its mammalian homologue, indicating the functional conservation during the evolution of C1q-related proteins.
As mentioned above, AmphiC1q1 did not possess the same function as lamprey LC1q to mediate complement activation, but had the LPS-binding activity as a new member of gC1q family with a conserved C1q-like domain. To characterize this novel molecule, we used real-time PCR to analyze its expression pattern. Although the methods we used in this study may have possible pitfalls because the total amount of cells is different in different stages and tissues, it can still tell us the relative expression of this targeted gene to some extent. AmphiC1q1 was detected in all stages of embryo development, indicating AmphiC1q1 might play important roles in the embryogenesis, which adds a new dimension to the versatility of the family. From the in situ hybridization, AmphiC1q1 was also expressed in the central nerver system of amphioxus, such as dorsal nerve cord, suggesting that this gene could be responsible for a more basic housekeeping function for neurons, just like the C1q subunits and C1q-related factor (CRF). C1q protein had been found to localize in Alzheimers plaques, facilitating the nucleation phase of β-amyloid aggregation (28). CRF might play a role in neuronal differentiation, and cells regulating motor control required a higher level expression of this gene (29). Because AmphiC1q1 displayed a homology to C1q and CRF, it would lead us to speculate that AmphiC1q1 might have the similar function as C1q and CRF in the nervous system. AmphiC1q1 was most detected in the cytomembrane of mature oocytes, similar to CaOC1q-like proteins localizing in egg envelope of the oocytes at cortical granule stage and vitellogenesis stage, indicating that AmphiC1q1 might have the unique function in oogenesis, oocyte maturation, and egg fertilization, the same as CaOC1q-like factor (4). Moreover, AmphiC1q1 was particularly detected in the structures that were exposed to invading microorganisms, such as coelomic cells and villi of epithelial cells of gut, suggesting that AmphiC1q1 might be involved in the defense against those pathogens, corresponding well with interaction between LPS and AmphiC1q1 protein, as mentioned above.
Because AmphiC1q1 displayed the highest homology to CTRP1, which was markedly expressed in vascular wall tissue, and played a role in collagen-induced platelet activation and aggregation (3), just like C1q (30), we investigated whether AmphiC1q1 might exhibit similar functions. Interestingly, initial studies indicated that AmphiC1q1 could block collagen-induced platelet aggregation, and the truncated gC1q domain did not possess this function (Fig. 9), indicating that CLR of AmphiC1q1 played a very important role in blocking platelet aggregation. Although platelet has not been found to exist in the amphioxus, AmphiC1q1 might block the platelet-like aggregation related to the biochemical progress of amphioxus immune defense. In contrast, there may be other ligands of AmphiC1q1 that exist in the mammalian platelet that are not known to us, so we need to further study these ligands in the host cell. Early work on the evolution of vertebrate fibrinogen suggested a common origin of the arthropod hemolymph coagulation and the vertebrate blood coagulation systems, and a common ancestor for the innate immunity and the blood coagulation systems (31). The role of AmphiC1q1 on platelet-like aggregation may also provide some evidence for understanding the evolution of the C1q-mediated innate immunity and the blood coagulation systems.
In summary, the newly identified function of this new member of the C1q family in this study may shed light on further exploration of this complicated molecule. Although whether AmphiC1q1 was involved in the complement activity or others in the immune system of amphioxus was still unknown, it was revealed to have a partial function of vertebrate C1q family, such as the interaction between C1q and LPS, and blocking collagen-induced platelet aggregation the same as CTRP1. The functional versatility of this molecule may be resulted in the great expansion of its gC1q family repertoire in amphioxus. Amphioxus had more than 50 C1q-related genes that had been found in the amphioxus draft genome, compared with 5 in sea urchin and 2 in ascidian (10). The sudden expansion of C1q-related genes in amphioxus may lead to that the function of many molecules, such as 29 amphioxus gC1qs clustered into a clade, were not well differentiated, compared with mammalian ones. Some molecules, such as AmphiC1q1, may even possess other functions beyond its mammalian homologue because the functional differentiation of this primitive form was not fully evolved as that of high species. In short, the study of the primitive form of mammalian C1q family in the most basal extant chordate lineage will provide insight into the evolution of C1q family and C1q-mediated complement system, and especially shed light on the functional evolution of its vertebrate homologues.
| Disclosures |
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| Footnotes |
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1 This work was supported by Project 2007CB815800 of the National Basic Research Program (973) and Project 2006AA09Z433 of the State High-Tech Development Project (863) from the Ministry of Science and Technology of China; Project 2007DFA30840 of International S&T Cooperation Program of China; Key Project (0107) from the Ministry of Education and Key Projects of Commission of Science and Technology of Guangdong Province and Guangzhou City; and Project 20070420145 from China postdoctoral science foundation. A.X. is a recipient of the Outstanding Young Scientist Award from the National Natural Science Foundation of China. ![]()
2 Y.Y., H.H., and Y.W. contributed equally to this work. ![]()
3 Address correspondence and reprint requests to Dr. Anlong Xu, Department of Biochemistry, College of Life Sciences, Sun Yat-Sen (Zhongshan) University, 135 Xingangxi Road, 510275, Guangzhou, Peoples Republic of China. E-mail address: lssxal{at}mail.sysu.edu.cn ![]()
4 Abbreviations used in this paper: gC1q, globular domain of C1q; CLR, collagen-like region; CRF, C1q-related factor; CTRP or cqt, C1q and TNF-related protein; GlcNAc, N-acetyl-glucosamine; ME, minimum-evolution; PRP, platelet-rich plasma; TRX, thioredoxin. ![]()
Received for publication December 31, 2007. Accepted for publication September 9, 2008.
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