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* Laboratory of Immunology, National Institute on Aging, National Institutes of Health, Baltimore, MD 21224;
Department of Genetics, University of Pennsylvania Medical School, Philadelphia, PA 19104; and
Division of Allergy and Clinical Immunology, Department of Medicine, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand
| Abstract |
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| Introduction |
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Krüppel-like factor 4 (Klf4)3 is a zinc-finger transcription factor that regulates cell proliferation and differentiation (6, 7, 8). One unique feature of Klf4 is its function in cell cycle and growth depending on the surrounding context (9). Klf4 induces cell cycle arrest at the G1/S boundary in untransformed cells while acting as an oncogene by repressing p53 in transformed cells expressing RASV12 (7). In addition, Klf4 induces oncogenic transformation in the absence of functional cyclin D1 and the cyclin-dependent kinase inhibitor, p21WAF1/Cip1 (10). A recent report shows that Klf4 is expressed in several types of human B cell lymphoma/leukemia lineages (11), and overexpression of Klf4 can induce cell cycle arrest and apoptosis in the G1 phase of the cell cycle of transformed pro/pre-B cell lines. Pro/pre-B cells that overexpress Klf4 display increased expression of p21CIP1, and decreased expression of c-Myc and cyclin D2, indicating that Klf4 might regulate cell cycle in B cell malignancies. However, the physiological role of Klf4 in normal B cells has not yet been examined.
To determine the role of Klf4 in B cells, we generated mice deficient for Klf4 in B cells (bKlf4–/–) and studied their response to activation-induced proliferation. In this study, we report that bKlf4–/– mice had a modest reduction of pre-B cells in bone marrow and in mature B cells in spleen; B cells in the absence of Klf4 exhibited a defect in the BCR-mediated proliferation response. We demonstrate that this proliferation defect is due to the inability of cyclin D2 up-regulation in B cells from bKlf4–/– mice, and that Klf4 directly binds to the promoter and regulates cyclin D2 expression. These findings suggest that Klf4 plays an important role in regulating activation-induced B cell proliferation.
| Materials and Methods |
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Klf4-loxP mice (12) were crossed with CD19-Cre transgenic mice (13) to generate bKlf4–/– mice in which the Klf4 allele is specifically deleted in B cells. The deletion of the Klf4 gene in B cells was confirmed by Southern blotting and by RT-PCR. The breeding was conducted between bKlf4+/– mice and genotyping was done by PCR around 4 wk of age. bKlf4–/– and bKlf4+/+ littermate mice were used in the experiments at 8–16 wk of age. Maintenance and experiments of mice were in accordance with the National Institutes of Health policies for animal care and use.
Isolation and stimulation of B cells
Pro- and pre-B cells were isolated from bone marrow by cell sorting (MoFlo) based on the expressions of CD43+/CD24–/B220+ for pro-B cells and CD43–/CD24+/B220+ for pre-B cells. Spleen B cells were isolated by a negative depletion method using a B cell isolation kit (Miltenyi Biotec) according to the manufacturers instruction. The purity of these isolated cells was >95%. Freshly isolated splenic B cells were resuspended in RPMI 1640 medium containing 10% FBS, 2 mM L-glutamine, 50 µM 2-ME, and 10 U/ml penicillin/10 µg/ml streptomycin (Invitrogen Life Technologies), and 24 µg/ml AffiniPure goat anti-mouse IgM µ-chain specific (Jackson ImmunoResearch Laboratories) alone or in combination with 5 µg/ml anti-mouse CD40 (clone 1C10; eBioscience) or with LPS (10 µg/ml; Sigma-Aldrich) were added. Stimulated B cells were harvested at specified time for mRNA, protein, and other analyses.
Flow cytometry analysis
Single-cell suspensions of bone marrow cells and splenocytes were incubated with different combinations of the following Abs against: CD4-FITC, CD8-PE, CD19-TC, CD24-FITC, CD43-PE, B220-Tri-color, IgM-PE (Invitrogen Life Technologies). Data were collected on the FACSCalibur and analyzed using CellQuest Pro software (BD Biosciences).
Cell cycle analysis
Cell cycle analysis was conducted using the propidium iodide staining kit (BD Biosciences) according to the manufacturers instruction. The data were collected using a FACSCalibur and analyzed using MultiCycle software (Phoenix Flow Systems).
[3H]Thymidine incorporation assays
Freshly isolated B cells were plated in triplicate at 2 x 105 cells/well in 96-well plates and stimulated with 24 µg/ml goat anti-mouse IgM, µ-chain specific (Jackson ImmunoResearch Laboratories) alone or in combination with 5 µg/ml anti-mouse CD40 or LPS for 48 h and then 1 µCi of [3H]thymidine was added to each well. Cells were harvested 20 h later and [3H]thymidine incorporation was measured.
CFSE assay
Freshly isolated B cells were labeled with 2.5 µM CFSE (Invitrogen Life Technologies) at 37°C for 10 min and washed twice with RPMI 1640 containing 10% FCS. After stimulation for 2 and 3 days, the CFSE profiles were evaluated by flow cytometry and the proliferation index (PI) was calculated using MODFIT software (Verity Software House).
Quantitative RT-PCR
The procedure of quantitative RT-PCR was previously described (14). Primers were designed using PRISM Primer Express 2.0 (Applied Biosystems) and made by Integrated DNA Technologies. Primers sequences are Klf4: 5'-GGTGCAGCTTGCAGCAGTAA-3' and 5'-AAAGTCTAGGTCCAGGAGGTCGTT-3'; CcnD2: 5'-GCGTGCAGAAGGACATCCA-3' and 5'-CCTCACAGACCTCTAGCATCCA-3'; CcnD3: 5'-ACGAC TTCCTGGCCTTGATTC-3' and 5'-CAAAGCCTGCCGGTCACT-3'; CdknA1 (p21): 5'-GGTGGGCCCGGAACAT-3' and 5'-GCGCTTGGAGTGATAGAAATCTG-3'; c-Myc: 5'-GGGCCAGCCCTGAGCCCCTAGTG-3' and 5'-ATGGAGATGAGCCCGACTCCGACC-3'; L32: 5'-ACCAGTCAGACCGATATGTGAAAA-3' and 5'-CGCACCCTGTTGTCAATGC-3';
-actin: 5'-AGGTCATCACTATTGGCAACGA-3' and 5'-AGGATTCCATACCCAAGAAGGAA-3'. The real-time PCR was conducted in 96-well plates in a 25 µl total volume using SYBR green PCR mix kit (Bio-Rad) under the manufacturers condition. The specificity of the PCR product was confirmed by gel (2% agarose) electrophoresis. Each RT-PCR was repeated twice and the mean was used in the figures. The threshold cycle values obtained from each reaction were normalized to the average of ribosomal protein L32 and
-actin at each correlating time point.
Western blot
Standard Western blots were performed using the following Abs: cyclin D2 (1:200; Abcam), cyclin D3 (1:2,000; Cell Signaling Technology), p21 (1:500; BD Biosciences), and
-actin (1:10,000; Sigma-Aldrich) as a loading control, followed by HRP-linked anti-mouse IgG (1:5,000; GE Healthcare). Signals were detected using the ECL detection system (GE Healthcare) according to the manufacturers instructions. Five different samples were analyzed for each Ab. The quantitation was conducted by collecting images (FluorChem; Alpha Innotech) and calculated using UN-SCAN-IT software (Silk Scientific). The intensity values were normalized to
-actin and the mean intensity values were presented.
Chromatin immunoprecipitation (ChIP) assay
The procedure of the ChIP assay was previously described (14). In brief, 2 million freshly isolated spleen B cells from C57BL/6 mice were incubated with 1% formaldehyde at 37°C for 10 min and washing twice with cold PBS containing protease inhibitors (Complete; Roche). The cells were lysed with lysis buffer, and the chromosomal DNA was then sheared with sonication (Sonic Dismembrator Model 100; Fisher Scientific). To eliminate nonspecific binding, Dynabeads protein G was first incubated with cell lysate and washed, then cell lysates were separated into three parts: 1) input, 2) immunoprecipitate with 2 µg of monoclonal anti-Klf4 (ABNOVA), and 3) immunoprecipitate with an isotype-matched control IgG. DNA from these three fractions were isolated and used for real-time PCR. Three pairs of primers were used: CcnD2_p2 (–233 to –372 bp): 5'-AAGCCTCCGAAGTTAGAGAGCAC-3' and 5'-CTCCCCATCCAGCCCCGC-3'; CcnD2_p3 (–501 to –638 bp): 5'-AAGCACCCCTTTCTCCAACATC-3' and 5'-GCAACCTCGCCAAACCAGG-3'; and CcnD2_p4 (–766 to –922 bp): 5'-AGCCAAACCTAAACCCTCCCTCTC-3' and 5'-ACGCAGGAAAAACCCGCTTC-3'. The data were derived from two independent experiments and presented as the percentage of input value.
Statistical analysis
The Student t test was used to analyze the statistical differences between bklf4+/+ and bklf4–/– mice, and p values <0.05 were considered significant.
| Results |
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To examine the expression of Klf4 in B cells, we isolated pro-B cells to pre-B cells from bone marrow and mature B cells from spleen and measured levels of Klf4 mRNA by real-time quantitative RT-PCR. We found that levels of Klf4 expression were low in pro-B cells, increased in pre-B cells, and reached highest in mature B cells (Fig. 1A). Compared with pro-B cells, mature B cells expressed at least seven times more Klf4. To further examine Klf4 expression after activation, we stimulated mature B cells from spleen with anti-IgM (anti-µ-specific Ab) in vitro. We found that Klf4 levels rapidly down-regulate after 2 h of stimulation and reached the lowest level after 48 h stimulation (Fig. 1B). These findings suggest that expression of Klf4 increases with B cell maturation and decreases after activation.
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To further evaluate the function of Klf4, we generated mice that deleted the Klf4 gene specifically in B cells by crossing Klf4-loxP mice (12) with CD19-Cre transgenic mice (13) B cells isolated from the bKlf4–/– mice deleted the Klf4 gene only in B cells, but not in other cells as confirmed by Southern blot and PCR (Fig. 2, A and B). In addition, we demonstrated the loss of Klf4 at the mRNA level in B cells from bKlf4–/– mice by real-time RT-PCR (Fig. 2C). The bKlf4–/– mice were fertile and had no apparent abnormalities. Analysis of B cells in bone marrow from bKlf4–/– mice showed a modest increase of pro-B cells but it did not reach statistical significance (Fig. 3A, Table I). In contrast, a modest and statistical significant decrease of the percentage of pre-B cells (11% reduction, p = 0.001) was observed in bKlf4–/– mice (Fig. 3A, Table I). In spleen, a similar modest and statistical significant decrease in percentage (9% reduction, p < 0.05) and in numbers (25% reduction, p < 0.05) of mature B cells was observed (Fig. 3, B and C, Table I). The percentage of B1 B cells in the peritoneal cavity was not changed between bKlf4–/– mice and their controls (Table I). Together, these findings suggest that Klf4 may participate in the regulation of B cell development and homeostasis.
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To determine whether Klf4 regulates B cell proliferation, we compared DNA synthesis and cell division of B cells between bKlf4–/– and bKlf4+/+ mice in response to anti-IgM alone, or anti-IgM plus anti-CD40, or LPS stimulation in vitro. [3H]Thymidine incorporation was used for evaluating DNA synthesis; B cells from bKlf4–/– mice showed significantly reduced [3H]thymidine uptake compared with B cells from bKlf4+/+ mice under stimulation conditions (p < 0.05 for both anti-IgM alone, n = 10 and for anti-IgM/anti-CD40, n = 5) but not under LPS stimulation (p = 0.11, n = 3) (Fig. 4A). CFSE-tracking dye was used to examine activation-induced cell division by comparing PI. PI is defined by the total number of cells after culture divided by the computed number of original parent cells, and was significantly lower in B cells from bKlf4–/– than from bKlf4+/+ mice (p < 0.05 for anti-IgM alone, n = 9 and p < 0.01 for anti-IgM/anti-CD40, n = 14) (Fig. 4B). Together, these findings suggest that Klf4 is involved in BCR-mediated, activation-induced B cell proliferation.
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To further investigate the precise defects in activation-induced proliferation in bKlf4–/– B cells, the cell cycle status of B cells after activation was compared between bKlf4–/– and bKlf4+/+ mice. More B cells remained in G1 phase and fewer B cells in S phase from bKlf4–/– mice than from bKlf4+/+ mice after 48 h of anti-IgM (Fig. 5) and after anti-IgM/anti-CD40 stimulations (data not shown). This finding suggests that Klf4 regulates cell cycle progression from G1 to S phase in B cells and the absence of Klf4 results in partial blockade of B cell progression from G1 to S phase.
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To understand the mechanisms underlying the defects of G1 to S phase progression, we examined the expression levels of four cell cycle and proliferation-related genes (p21WAF1/Cip1, cyclin D2, cyclin D3, and c-Myc). At the mRNA level, p21WAF1/Cip1 and cyclin D2 were expressed lower in freshly isolated and stimulated B cells from bKlf4–/– mice than from the control mice but cyclin D3 and c-Myc were expressed at similar levels (Fig. 6A). At the protein level, cyclin D2 was lower in B cells at resting and after 24-h stimulation from bKlf4–/– mice than from control mice but was similar after 48-h stimulation between bKlf4–/– and the control mice (Fig. 6B). The protein levels of cyclin D3 and p21 were similar in resting and activated B cells from bKlf4+/+ and bKlf4–/– mice (Fig. 6B). The low expression of cyclin D2 at resting B cells and the slow up-regulation in 24-h stimulated B cells from bKlf4–/– mice may explain the declined proliferation due to the defects of G1- to S-phase transition.
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To determine whether Klf4 directly regulates cyclin D2 expression, we applied ChIP with a mAb against Klf4. Based on the consensus Klf4-binding sequence (CACCC) (15), there were three potential sites located at the two regions (–336 to –340 bp and –622 to –626/–631 to –635 bp) (16) (Fig. 7A). Three pairs of primers were designed to cover these two putative-binding sites and one no-binding site as a control. We found that Klf4-binding sites had higher levels of binding (PCR region –233 to –372 bp and –501 to –638 bp) compared with anti-Klf4 Ab and a control Ab. There was no difference in the region containing no Klf4-binding site (region –776 to –922 bp) between anti-Klf4 Ab and control (Fig. 7B). These findings demonstrate that Klf4 directly binds to the promoter of cyclin D2 and regulated its expression.
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| Discussion |
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Although the mechanism is not completely understood, the number of B cells in mice is tightly maintained (17). We found a significant reduction of pre-B cells in bone marrow and mature B cells in spleen in the absence of Klf4 but there was no decrease of pro-B cells in bone marrow. As the CD19-cre-mediated deletion occurs during pro-B cell to pre-B cell stages and Klf4 was expressed in relatively low levels in pro-B cells, it remains to be determined whether Klf4 plays any significant role in the pro-B cells. It is interesting to note that cyclin D2 has a role in regulation of B cell numbers (18, 19). In cyclin D2-deficient mice, there was a reduction of B-1 B cells and B cell progenitors but no obvious change in the number of spleen B cells. In this study, we show a decrease of pre-B cells and mature B cells, but not pro-B cells nor B-1 B cells, in bKlf4–/– mice. Although a reduced expression of cyclin D2 was found in resting and 24-h stimulated B cells of bKlf4–/– mice, the decrease of different types of B cells between bKlf4–/– mice and cyclin D2-deficient mice suggests that Klf4 may regulate a broad range of genes including cyclin D2 that may be involved in control of B cell numbers. Interestingly, we did not find a compensatory increase of cyclin D3 in B cells from bKlf4–/– mice or a decrease in proliferation in response to LPS. Together, these findings suggest that Klf4 regulates cyclin D2 but not cyclin D3 through a BCR-mediated activation pathway. Thus, it is necessary to identify additional Klf4 target genes that are involved in regulation of B cell number.
Activation-induced cell proliferation is a multiple-step process that contains many checkpoints. In the absence of Klf4, we found reduced DNA synthesis measured by [3H]thymidine uptake along with an increase in G1-phase cells and a reduction in the number of cells that underwent cell divisions after in vitro stimulation. Together, these findings suggest that Klf4 acts as a positive regulator in BCR-mediated B cell proliferation. Furthermore, the levels of cyclin D2, but not p21, were decreased in the absence of Klf4. Inability of up-regulation of cyclin D2 provides a partial explanation for the reduced cell proliferation in B cells that lack Klf4. Interestingly, overexpression of Klf4 in transformed pro-/pre-B cell lines causes cell cycle arrest of these transformed pro-/pre-B cell lines (11). This suggests that the consequence of Klf4 and its target gene expressions is dependent on the physiological makeup of the cells. As demonstrated in tumor cells, Klf4 can be either a tumor suppressor or an oncogene depending on the cellular conditions or "context" (20). Thus, understanding the availability and function of Klf4 target genes in B cells will help to elucidate the role of Klf4 in regulation of cell cycle and growth of B cells.
| Acknowledgments |
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| Disclosures |
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| Footnotes |
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1 This work was supported by the Intramural Research Program of the National Institute on Aging, National Institutes of Health. ![]()
2 Address correspondence and reprint requests to Dr. Nan-ping Weng, National Institute on Aging, National Institutes of Health, 5600 Nathan Shock Drive, Box 21, Baltimore, MD 21224. E-mail address: wengn{at}mail.nih.gov ![]()
3 Abbreviations used in this paper: Klf4, Krüppel-like factor 4; PI, proliferation index; ChIP, chromatin immunoprecipitation. ![]()
Received for publication May 9, 2007. Accepted for publication July 30, 2007.
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