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* Department of Cancer Immunology and AIDS, Dana-Farber Cancer Institute and
Department of Medicine, Harvard Medical School, Boston, MA 02115
| Abstract |
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| Introduction |
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Cell surface CXCR4 reacts multifunctionally to SDF-1 exposure and promotes a variety of proliferative, differentiative, survival, morphological, chemotactic, and adhesive cell responses (1). This raises questions of whether CXCR4 is expressed as functionally different isoforms between cell types or even on the surface of individual cells and how CXCR4-SDF-1 interactions might be mediated or controlled. These questions are particularly pertinent considering CXCR4s constitutive expression by most body tissues and the keen interest in investigating CXCR4 as a therapeutic target (1, 17). Indeed, numerous posttranslational modifications of CXCR4 have been reported including N-glycosylation (18, 19, 20), disulfide formation (21), tyrosine sulfation (22, 23), serine chondroitin sulfation (22), oligomerization (24, 25), and proteolysis (26, 27, 28). Several studies have documented structural and functional heterogeneity in CXCR4 as well (19, 22).
Antigenically distinct conformations of CXCR4 have been previously reported (29, 30). The murine mAbs used in these studies mainly mapped to extracellular loop (ECL) 2. Although both studies showed that different antigenic isoforms of CXCR4 were expressed on different cells, they differed in their findings with regard to the number of antigenic isoforms and their distribution among different immune cells. The findings nevertheless raise the possibility that identifying a particular CXCR4 antigenic signature of a cell may provide important information regarding CXCR4 structure and functional responses to SDF-1 and HIV-1.
The purpose of this study was to isolate human anti-CXCR4 Abs for studies of receptor antigenic heterogeneity and function. A panel of human Abs was identified from a large, nonimmune human Ab phage library. Ab-binding studies provided strong evidence of CXCR4 antigenic heterogeneity on the cell lines that were examined. In addition, the Abs exhibited unique structural and biochemical features. The genetic studies revealed evidence of VH replacement in the formation of the rearranged VH genes and the protein studies showed sulfation of tyrosine residues within V regions that have not been previously described (31, 32). Importantly, for several Abs, the V-region tyrosine sulfation was functional and contributed bidirectionally to CXCR4-binding affinity depending on the individual Ab. These studies demonstrate for the first time that tyrosine sulfation contributes to the activity of self-reactive Abs and suggest possible involvement of tyrosine-sulfated Abs in the pathogenesis of autoimmune disease (33). Furthermore, because these Abs recognize different CXCR4 isoforms, they should prove valuable for studies that examine modulation of the CXCR4-SDF-1 axis in health and disease and may be useful for diagnostic and/or therapeutic applications.
| Materials and Methods |
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The canine thymus-derived cell line Cf2Th and human embryonic kidney cell line 293T were grown in DMEM (Invitrogen Life Technologies) supplemented with 10% (v/v) heat-inactivated FCS, 100 IU/ml penicillin, and 100 µg/ml streptomycin (total DMEM) at 37°C with 5% CO2. Stably transfected cell line Cf2ThCXCR4C9 (Cf2X4C9), which expresses codon-optimized CXCR4 (synCXCR4) containing a C9 tag (TETSQVAPA) at its C terminus (34), was grown in the total DMEM containing 500 µg/ml G418. Cf2ThCD4CXCR4 (X4T4) cells were grown in total DMEM plus 500 µg/ml G418 and 200 µg/ml hygromycin B. Human T lymphocytic leukemia cell line Jurkat was grown in RPMI 1640 containing 10% (v/v) heat-inactivated FCS.
Abs and reagents
The sources for Abs and reagents are: both purified and PE-conjugated anti-CCR5 (2D7) and -CXCR4 (12G5) mouse mAbs and IgG2a isotype control (BD Pharmingen); the 1D4 mAb reacting with a C9 peptide (University of British Columbia, Vancouver, Canada); FITC-goat anti-human IgG and FITC-goat anti-mouse IgG (Sigma-Aldrich); and purified and HRP-labeled mouse IgG against M13 (Amersham Biosciences). Other reagents included Escherichia coli TG1 and helper phage VCS M13 (Stratagene), G418 (Gellgro), and tetramethylbenzidine substrate and stop solution (KPL).
Preparation and characterization of CXCR4-containing paramagnetic proteoliposomes (CXCR4-PMPLs)
The method used to prepare CXCR4-PMPLs was described previously (34, 35). In brief, 1 x 108 Cf2X4C9 cells were lysed with 1% CHAPSO and then incubated with 0.5 x 109 M-280 Dynal beads (Dynal Biotech) coated with 1D4 mAb. The protein-bound beads were washed six times and resuspended in buffer containing 100 mM (NH4)2SO4, 20 mM Tris (pH 7.5), and 1 mg/ml lipid mixture consisted of POPC/POPE/DOPA (Avanti Polar Lipids) and then dialyzed to remove detergent and allow the formation of proteoliposomes.
To evaluate the CXCR4-PMPL protein content, Cf2X4C9 cells were radiolabeled with [35S]methionine/cysteine (PerkinElmer Life Sciences) and used for formation of CXCR4-PMPLs. A total of 3 x 107 proteoliposomes were treated with 2x SDS sample buffer and the eluted sample was separated by SDS-PAGE followed by autoradiography analysis (KODAK BioMax Film and Fisher Biotech autoradiography cassette).
The native conformation of CXCR4 captured on PMPLs was detected by staining with the CXCR4-specific conformation-dependent mAb 12G5 and the exclusive ligand of CXCR4 (SDF-1
). A total of 1 x 106 CXCR4-PMPLs were incubated with 20 µl of PE-coupled 12G5 mAb for 45 min at 4°C. The isotype-matched control Ab and CCR5-specific mAb 2D7 were used as negative controls. PMPLs were washed in PBS/0.5% BSA/0.02% NaN3 and analyzed by flow cytometric analysis on a BD Biosciences FACScan apparatus with CellQuest software.
Selection of anti-CXCR4 single-chain Abs from nonimmune human scFv phage display library with PMPL panning
The Ab selection procedure including CXCR4-PMPL panning, cell-based ELISA screening, and confirmation by flow cytometric analysis as well as DNA sequencing were essentially following the procedure describe previously (35, 36). Cf2Th cells, CCR5-PMPLs, and CXCR4 PMPLs were preblocked in blocking buffer (2% BSA/2% nonfat milk/PBS) at 4°C for 30 min. A total of 5 x 1012 PFU phage library was incubated with 2 x 107 Cf2Th cell and 2 x 107 CCR5 PMPLs for three separate times to absorb the nonspecific clones. The 15 and 12 billion member human scFv-phage display (Mehta I/II) libraries (S. Mehta and W. A. Marasco, unpublished data), respectively, were pooled and then incubated with 5 x 107 CXCR4 PMPLs preblocked in 3 ml of 4% BSA/4% nonfat milk/PBS for 2 h at 4°C with gentle shaking. Unbound phages were removed by washing with 3 ml of PBS containing 0.1% Tween 20. Phage bound to CXCR4-PMPLs was eluted by addition of 1 ml of 100 mM triethylamine and incubation for 20 min at room temperature. The mixture was neutralized with an equal volume of 1 M Tris-HCl (pH 6.8). The PMPLs were pelleted and half of the supernatant was used for phage titration and infection of an exponentially growing culture of E. coli TG1 for next round of panning. Three rounds of PMPL-based panning were performed.
Cell-based ELISA with phage scFv Abs
Single colonies from the second and third rounds of panning were picked randomly and phage were rescued. Cell-based ELISA screening for individual phage scFv Ab clone was performed as follows: 2 x 105 X4T4 cells or Cf2Th cells were incubated with 70 µl of phage supernatant for 1 h at 4°C. The unbound phage Abs were removed by washing cells three times with washing buffer (4% FBS/PBS). One hundred microliters of HRP-conjugated mouse anti-M13 mAb solution (1/4000 diluted in blocking buffer) was added, followed by incubation at 4°C for 45 min to detect cell surface-bound phage. Absorbance at 450 nm (A450) was recorded in an ELISA reader. Clones were scored positive by ELISA if the OD450 for X4T4 cells was >5-fold over parental Cf2Th cells.
Subcloning, expression, and purification of soluble anti-CXCR4 scFvFc Abs
For scFvFc expression in mammalian cells, scFv-coding DNA fragments from the pFarber phagemid were excised by SfiI/NotI digestion and subcloned into an eukaryotic expression vector (pcDNA3.1-hinge-stuffer), where the anti-CXCR4 scFv is fused in frame with the human IgG1 hinge-CH2-CH3 domains to form scFvFc fusions. 293FT cells were transfected with anti-CXCR4 scFvFc expression plasmids by the CaPO4 method and allowed to express in 293 SFM II serum-free medium (Invitrogen Life Technologies) containing 4 mM L-glutamine and 4 mM sodium butyrate. The cell culture supernatant containing scFvFc proteins was collected twice every 48 h and the Fc-containing Abs were purified by protein A affinity chromatography.
Flow cytometric characterization of the anti-CXCR4 Ab-binding activity
The binding of anti-CXCR4 Abs was examined by an indirect immunofluorescence assay. A total of 5 x 105 Jurkat or stable X4T4 cells were incubated with each serially diluted scFvFc Ab for 45 min at 4°C followed by staining with FITC-goat anti-human IgG. Anti-CXCR4 mouse mAb 12G5 treatment followed by FITC-goat anti-mouse IgG staining was used as a positive control. Cells were washed in PBS containing 0.5% BSA and analyzed on FACScan apparatus. The EC50 (concentration of Ab that reaches half-maximal for percent cell binding and geometric mean fluorescence intensity (GMFI), respectively) were used as a measure of the relative binding affinity of each scFvFc to CXCR4-positive cells.
Inhibition of Jurkat cell chemotaxis induced by SDF-1
A total of 2 x 105 Jurkat cells were incubated with 100 µl of chemotaxis buffer (0.1% BSA/RPMI 1640 medium) with or without indicated amounts of anti-CXCR4 scFvFc at 37°C for 30 min. Human CCR5-specific A8 scFvFc (S. Wei, C. Xu, J. Sui, Q. Zhu, and W. A. Marasco, unpublished data) and 12G5 mouse IgG were used as negative or positive control, respectively. Cell suspension was transferred to the upper well of a Corning Costar Transwell (6.5 mm diameter, 5.0 µm pore size) where the lower chamber contained 50 ng/ml human SDF-1
(concentration chosen after a complete dose-response curve was established for SDF-1
-induced chemotaxis of Jurkat cells) in 600 µl of chemotaxis buffer. After incubation for 4 h at 37°C in a 5% CO2 incubator, cells migrated into lower wells (in duplicates) were collected and cell number was counted with Flow-Check Fluorosperes (BD Biotechnology) as markers on FACScan. Percentage of inhibition was calculated with the following formula: percent of inhibition = 100 x (1 – average cell number under treatment of Abs/average cell number without treatment).
Epitope mapping anti-CXCR4 scFvFc Abs
CXCR4/CXCR2 chimera and N11Q CXCR4 mutant studies. Chimeric receptors composed of human CXCR4 and CXCR2 were provided by Dr. R. W. Doms (Department of Pathology and Laboratory Medicine, Department of Medicine, University of Pennsylvania, Philadelphia, PA) (37). 293T cells were transiently transfected with each chimeric CXCR4/CXCR2 receptor plasmid as well as synCXCR4 or CXCR2 plasmids. Upon 48 h of posttransfection, cells were harvested with 5 mM EDTA/PBS and the binding of each anti-CXCR4 scFvFc Abs was examined by an indirect immunofluorescence assay through FACScan. The binding activity was calculated with the following formula: percent = 100 x (GMFI of CXCR4 variants – GMFI of 293T cells)/(GMFI of wild-type CXCR4 – GMFI of 293T cells). In the studies comparing the scFvFc binding to stable Cf2 cells expressing CXCR4 wild type and N11Q mutant, the activity was normalized to 12G5 binding.
AMD3100 inhibition and 12G5 competition studies. (1) A total of 5 x 105 X4T4 cells were treated in PBS with or without 250 ng of AMD3100 (5 µg/ml x 50 µl) at 4°C for 30 min followed by addition of anti-CXCR4 scFvFcs or 12G5 mAb. After 45 min, unbound Abs were removed and FITC-labeled goat anti-human-IgG or FITC-labeled goat anti-mouse-IgG was used to detect the Abs bound to the cell surface through flow cytometric analysis. The binding intensity was calculated as the following formula: percentage = 100 x GMFI of cells treated with AMD3100/GMFI of cells without treatment. (2) A total of 2.5 µg of anti-CXCR4 scFvFc or unlabeled mAb 12G5 were incubated with 5 x 105 X4T4 cells at 4°C for 30 min before the addition of PE-conjugated 12G5. After another 45-min incubation at 4°C, cells were washed and flow cytometric analysis was performed to detect the PE-12G5 binding intensity on cell surface. The percentage of inhibition on 12G5 binding was calculated as: percent of inhibition = 100 x (1 – GMFI of sample preincubated with anti-CXCR4 scFvFc/GMFI of 12G5 samples without treatment).
Sulfation studies
The metabolic radioisotope labeling method to detect sulfated protein was essentially used as described before (23). For sulfation inhibition studies, 100 mM sodium chlorate was added to 293 SFM II medium 18 h after transfection. After another 48 h, the secreted Abs were purified from culture supernatant with protein A-Sepharose beads. Specific tyrosine mutations were introduced into scFvFc expression constructs with the QuickChange Multi Site-Directed Mutagenesis kit (Stratagene) according to manufacturers instructions and final mutant constructs were confirmed by DNA sequence analysis. The primers used for site-directed tyrosine mutagenesis are: X20-DD-VHCDR2, 5'-GCAAGATGGAAGTGAGAAAGACGATGTGGACTCTGTGAAGGG-3'; X20-D-VL framework domain (FW) 3, 5'-AGGCTGAAGATGAGGCTGACGATTTCTGTAATTCCCGGAG-3'; X33-DD-VHCDR2: 5'-ACATGATGGAACTAAGAAAGATGACGCAGACTCCGTGAAGGG-3'; X33-DD-VLFW3: 5'-GGCTGAGGAT GAGGCTGATGATGACTGCCTGTCCTTTGACAG-3'.
| Results |
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Cell lysates from [35S]cysteine/[35S]methionine metabolically labeled Cf2X4C9 cells were used to form CXCR4-PMPLs. CXCR4-PMPLs were pelleted, treated with reducing buffer, and the supernatant was subjected to SDS-PAGE analysis. As shown in Fig. 1A, while no band detected from PMPLs formed with parental Cf2Th cell lysates (lane 2), only one predominant band was observed by autoradiography with the expected molecular mass of mature CXCR4 (46 kDa) in PMPLs formed with Cf2X4C9 cell lysates (lane 1). As shown in Fig. 1B, in addition to CXCR4, two other protein bands were detected by silver staining which correspond to the 1D4 mAb H chain (50 kDa) and L chain (25 kDa). Other cellular proteins were present at only trace levels. The integrity of CXCR4 secondary structure in the PMPLs was also evaluated by binding of the conformationally sensitive anti-CXCR4 mAb 12G5 through flow cytometric analysis. As shown in Fig. 1C, PE-labeled 12G5 mAb bound to CXCR4-PMPLs efficiently whereas isotype-matched control IgG2a mAb did not bind as expected. The specificity of this binding was further demonstrated by failure of mAb 12G5 binding to control CCR5-containing PMPLs whereas mouse anti-CCR5 mAb 2D7, a conformation-dependent Ab against coreceptor CCR5, bound to CCR5-PMPLs but not to CXCR4-PMPLs. In addition to 12G5, the CXCR4 ligand SDF-1
also bound specifically to CXCR4-PMPLs. These results demonstrate that CXCR4 is selectively incorporated in its native state in highly enriched form into the PMPLs.
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Twenty-three of 768 (2.99%) clones from the second round and 1 of 96 (1.04%) clones from third round of CXCR4-PMPL panning specifically bound to CXCR4-positive cells as detected by cell-based ELISA and confirmed by flow cytometric analysis with phage Abs (data not shown). DNA sequence analysis revealed six unique scFv clones (2N, X18, X19, X20, X33, and X48) from the second round of wild-type CXCR4-PMPLs panning and one clone (6R) from second round of N-terminal deleted (
N 2–25)-CXCR4-PMPL panning. Fig. 2 shows the complete V-region amino acid sequences of these clones. As can be seen, all clones show extensive diversity in the CDR regions. Three H chain families (VH1, VH3, and VH6) are represented (Table I). VH1–18 and VH6–1 germline genes were each represented once; two VH3 germline genes (VH3–7 and VH3–30) were used once (X20) and four times (2N, X19, X33, and X48), respectively. The H chain V-region genes can be roughly divided into two groups based on the length of CDR3 (Fig. 2). One group composed of three H chains (X18, X20, and X33) have longer CDR3 of 17–18 aa as compared with the average length of human CDR3s (13.1 aa). These same VH chains also have a high content (3, 4) of charged amino acids. The second group contains four H chains with shorter CDR3s (6R, 2N, X19, and X48) ranging from 8 to 13 aa with two to three charged residues. Two of the VH genes (X18 and X20) with longer CDR3s contain a high content of hydrophobic (5 or 6) amino acids, while one VH gene (X48) with a shorter CDR3 also contains 5 hydrophobic amino acids. X48 and X18 contained clusters of three and four tyrosines, respectively. Three L chain families (V
1, V
2, and V
3) including five germline genes (V1-3, V1-20, V1-16, V2-13, and A27) are represented (Table I). Interestingly, VL CDR3 of two clones, 6R and X18, contained a high content of charged amino acids (3 and 5) (Fig. 2), respectively.
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VH replacement, the secondary rearrangement of an upstream VH to a preformed VHDHJH gene, has recently been shown to contribute to normal VH repertoire development (38, 39, 40, 41). Importantly, the residual 3' "footprint" sequences of replaced VH genes have been shown to contribute charged amino acids in CDR3 (41). In addition, the frequency of charged amino acids within the V-D junction of VH replacement products have been found at a higher frequency than those in the V-D junction of non-VH replacement products or in the D-J junctions of normal Ig sequences (41). Table II shows the results of a VH gene replacement analysis of the seven anti-CXCR4 Ab genes isolated. Two of the seven VH regions (6R and X19) contain pentameric sequences corresponding to the 3' end of known VH genes. In the case of 6R, the analysis suggests that this V-D junction was formed by two sequential VH replacement events, the first of which resulted in the placement of histidine in the CDR3. For X19, a single VH replacement event appears to have occurred but it did not result in the gain of charged amino acids. This analysis did not provide evidence of VH replacement for two other VH CDR3s (2N and X33) that also had positive charges in the V-D junction sequences or for X18 and X20 where aspartic acid was encoded by "P" nucleotide additions.
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The anti-CXCR4 scFvFcs were constructed, expressed, and purified. The binding activities of the bivalent proteins were further examined by flow cytometric analysis. The results demonstrated that all anti-CXCR4 scFvFcs could recognize CXCR4-positive cells, but not parental Cf2Th cells. In addition, there was no cross-reaction against several other seven-transmembrane domain receptors including CCR1, CCR2, CCR5, CCR8, CXCR1, GPR1, GPR15, STRL33, or APJ (data not shown). The relative affinity of each anti-CXCR4 scFvFc protein was analyzed by staining of the CD4+CXCR4+ Jurkat cells and stable X4T4 cells using serial dilutions of each Ab in saturation-binding studies. A commercial anti-CXCR4 mAb 12G5 was used as a positive control. The results were analyzed for both percentage of cells with positive staining and EC50 values (concentration of Ab which gave half-maximal GMFI). As shown in Fig. 3, A and B, for both cell types, all of the scFvFcs reached 100% positive binding at a relatively lower concentration comparing to that needed to obtain GMFI saturation (Fig. 3, C and D), respectively. The only exception was 6R scFvFc, which did not reach saturation on Jurkat cells or X4T4 cells, suggesting that 6R may not possess a high enough binding affinity to reach saturation. The concentration of Ab to reach half-maximal GMFI on Jurkat cells ranged 150-fold from 0.10 ± 0.01 µg/ml for X48 to 15.2 ± 1.40 µg/ml for X19 (Fig. 3E). Similarly, the EC50 for GMFIMAX to X4T4 cells varied over a 46-fold range from 0.48 ± 0.01 µg/ml for X18 to 22.0 ± 5.8 µg/ml for 6R. Importantly, the rank order of scFvFc binding was essentially identical for both of these cell lines. 12G5 mAb reached half-maximal binding at 0.91 ± 0.19 µg/ml for Jurkat cells which is mid-range compared with two previous reports, 1.9 ± 0.5 µg/ml (29) and 0.19 ± 0.05 µg/ml (30), respectively. Fig. 3E shows that the maximal GMFIMAX binding to Jurkat cells could be divided into three groups: X18 and X20 show the highest GMFIMAX while 2N, X19, X48, and 12G5 show intermediate binding, and X33 and 6R bind poorly to Jurkat cell. A similar result was seen for X4T4 cells. Interestingly, for neither of the cell lines did we observe a direct correlation between maximal binding (potency) and EC50 (efficacy). For example, X48 and 12G5 are two clones with the high relative affinities but only intermediate maximal binding on both cell lines (compare A and B to C and D). On the basis of the differences in maximal binding of the eight Abs to these two cell lines, the results support the existence of relatively fixed subpopulations of CXCR4 molecules on the cell surface that can be recognized by different Abs but the relative contributions of conformation and structure to antigenic heterogeneity of CXCR4 remains to be determined.
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The ability of anti-CXCR4 scFvFc to inhibit SDF-1
-induced chemotaxis of Jurkat cells was next investigated to determine whether CXCR4 antigenic heterogeneity, as evidenced by Ab recognition of different subpopulations of CXCR4 molecules, could differentially effect this receptor signaling. As shown in Fig. 4, X18 and X20 exhibited the most potent inhibition of SDF-1
chemotaxis where cell migration was reduced by
60%, similar to mAb 12G5. In the presence of 10 µg of Abs, X48, the next strongest binding Ab, inhibited chemotaxis by
40%, X33 by 30%, and 6R/X19 by
20% while 2N did not inhibit chemotaxis at all.
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CXCR4/CXCR2 chimera and CXCR4 N11Q mutant studies.
To identify the Ab-recognition domains on CXCR4, the binding activity of each isolated scFvFc Ab to a panel of CXCR4/CXCR2 chimeric receptors (29) transiently expressed on 293T cells was examined by flow cytometric analysis. Comparable surface expression for each CXCR4/CXCR2 chimeric receptor was demonstrated by flow cytometry analysis using CXCR4-specific mAb 12G5 staining as a control which primarily recognizes an epitope located in ECL2 of human CXCR4 (29, 42, 43). As shown in Table III, none of the scFvFcs recognized wild-type CXCR2. Substitution of either the first 27 aa (2444) or replacement of the whole 38-aa N terminus (2444b) of CXCR4 by CXCR2 reduced staining intensity of most of the mAbs by >80%, with the only exception of X18 (34.5 and 32.2%, respectively). Five Abs, 2N, 6R, X20, X33, and X48, demonstrated strong binding to CXCR4-N-terminal (Nt) as evidenced by poor binding to all three chimeras (2444, 2444b, 2442) that lacked the CXCR4-Nt domain. When the ECL3 loop of CXCR4 was replaced by CXCR2 (4442), only 7.5 and 18.2% binding activity was seen for 6R and X19, respectively, indicating that 6R and X19 are multidomain (MD) Abs and recognize both the Nt and ECL3 domains. In addition, because 6R was isolated by panning against the
N2–25-CXCR4 deletion mutant, its Nt epitope must be contained within the membrane proximal region of E26 to K38. The fact that X18 recognized the 2442 chimeras indicates that X18 is another MD Ab whose epitope contains ECL1 and/or ECL2 as well as Nt and ECL3.
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50% for X48 and 22
30% for the other four clones, suggesting an important, although less critical, role for glycosylation at N11 in these Abs epitope recognition.
AMD3100 inhibition and 12G5 competition studies.
The interaction between the anti-CXCR4 scFvFcs and CXCR4 was further characterized in a binding competition assay with the small-molecule CXCR4 receptor antagonist AMD3100 through indirect immunofluorescence assay after preincubation of X4T4 or Jurkat cells with or without drug. As shown in Fig. 5A, treatment with AMD3100 had little to no effect on the binding activities of the Nt-directed Abs 2N, X20, X33, and X48 to X4T4 and Jurkat cells. For Abs that map to Nt/ECL3, inhibition of X19 binding to both cell lines was moderate (
60%) as was 6R binding to Jurkat cells (56%) while >80% inhibition of 6R binding to X4T4 cells was observed. Interestingly, AMD3100 markedly inhibited binding of the MD Ab X18 to X4T4 (81%) and Jurkat cells (89%). In addition, AMD3100 also inhibited mAb12G5 binding to X4T4 and Jurkat cells by 64 and 84%, respectively. These results are in agreement with data previously published by Carnec et al. (30) where a similar inhibition of MD mAb binding (anti-ECL2) but not anti-Nt mAb binding by AMD3100 was also observed.
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88%. Posttranslational tyrosine sulfation of a subset of anti-CXCR4 Abs and its effect on target Ag binding
Previous studies have demonstrated that sulfation of tyrosine residues in the VH CDR3 occurs in a high percentage of human anti-HIV-1 gp120 CD4i mAbs which are directed against epitopes that overlap the CCR5 coreceptor binding sites. In about half the cases, tyrosine sulfation was functional and contributed to HIV-1 envelope recognition (31, 32). To date, such posttranslational modifications have not been reported in Abs that are directed to the chemokine coreceptors or to cellular proteins in general and therefore we sought to experimentally determine whether tyrosine sulfation of the anti-CXCR4 Abs could occur and whether such modification affects the Abs binding affinity for CXCR4.
The sequence motif that specifies sulfation is only partially defined, with a dominant characteristic being three or four acidic residues within five residues of sulfotyrosine (32, 44). Instead of the known VH CDR3 region, computational analysis using "Sulfinator" prediction software (32, 44, 45) identified residues at the VL FW3-CDR3 boundary as potential sites for tyrosine sulfation (see Fig. 2, blue underline) for four of seven Abs (6R, X18, X33, and X48) (32, 44, 45). To determine whether posttranslational sulfation indeed occurred, 293T cells were transfected with Ab expression plasmids and were metabolically radiolabeled with either [35S]cysteine/[35S]methionine or [35S]sulfate. The secreted Ab proteins in the culture supernatant were precipitated by protein A-Sepharose beads and analyzed by SDS-PAGE. As shown in Fig. 6A, all seven anti-CXCR4 scFvFc proteins were expressed and secreted into the culture supernatant albeit at different levels. Importantly, four of seven clones, 6R, X20, 2N, and X33, showed strong sulfation. It should be noted that only sulfation of 6R and X33 were originally predicted by the software. Human IgG1 Fc fragment fused with the wild-type N terminus of CCR5 and an N-terminal CCR5 mutant in which the four tyrosine residues were replaced by aspartic acid (DDDD) were used as sulfation positive and negative controls, respectively (23) (Q. Zhu, unpublished data).
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D mutagenesis in VH-CDR2 and VL-FW3. As shown in Fig. 6B, although two of the mutations resulted in decreased total Ab expression (X20-D59D60 VH-CDR2 and X33-D86D87 VL-FW3), importantly, the Y59Y60
D59D60 double mutation in VH-CDR2 lead to undetectable sulfation in both Abs whereas only Y86
D86 mutation in X20 VL-FW3, but not Y86Y87
D86D87 double mutation in X33 VL FW3, had a small effect on sulfation. Due to the lower expression of the X20-D59D60 VH-CDR2 mutant it is possible that sulfation at Y86Y87 of X20 VL-FW3 was below detection limits. Thus, the results indicate that tyrosine sulfation occurred within VH CDR2 for X20 and X33 scFvFc, and was also possible in VL-FW3 for X20. To further assess the functional role of tyrosine sulfation on the binding activity of anti-CXCR4 scFvFc Abs, 293T cells were transiently transfected with plasmids encoding the four sulfated and one nonsulfated X48 scFvFc. At 18 h posttransfection, the cells were washed and incubated in medium without or with 100 mM sodium chlorate, a relatively nontoxic inhibitor of sulfation (23, 46), for an additional 48 h. The culture supernatants containing secreted Ab were then collected, precipitated, and analyzed by SDS-PAGE. All of the scFvFcs were expressed, albeit at a lower level, in medium containing sodium chlorate (Fig. 6D) and sulfation was inhibited as determined by 35S-sulfate labeling (Fig. 6C). Importantly, when their binding activities were examined on X4T4 cells, two of the four sulfated Abs (6R and X20) had markedly decreased binding activity while one Ab 2N showed an increase in its binding activity. No effect on binding was observed for the sulfated X33 or the control nonsulfated X48 Ab (Fig. 6E). Thus, tyrosine sulfation was functional in three of the four anti-CXCR4 Abs. The effects of tyrosine sulfation on binding activity were bidirectional and dependent on the individual Ab.
| Discussion |
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3%), a structurally and biochemically diverse panel of seven anti-CXCR4 Abs was isolated early in the selection process, from the second round of panning. This finding confirms and extends our previous report on the use of PMPLs to isolate human anti-CCR5 Abs (35). Thus, PMPLs containing purified seven transmembrane chemokine receptors provide a useful platform for the isolation of these human self-reactive Abs and appears to have clear advantages over other methods that rely on natural ligands or preexisting Abs (47, 48, 49) or use isolated fragments of the receptor in the Ab discovery process (50).
VH replacement has recently been shown to contribute to the primary B cell repertoire in humans (41, 51). In addition to extending the length of the CDR3 region, VH replacement footprints have been shown to preferentially contribute charged amino acids. In immature B cells, VH replacement may also contribute to the generation of Abs reactive to self Ags (39, 52, 53). Moreover, the higher frequency of VH replacement products has been reported in different autoimmune diseases and in the H chain of IgG genes encoding autoantibodies,
21–30% (54), comparing with a
5% VH replacement frequency in normal IgGs, respectively. In the present study, genetic analysis provided evidence that VH replacement has contributed to VH CDR3 diversity for two of the seven CXCR4 Abs (29%). However, neither of these Abs had long VH CDR3 regions and only one charged amino acid (His) was introduced into Ab 6R through VH replacement. Nevertheless, these observations provide additional evidence that VH replacement does contribute to the repertoire of VH genes with specific binding activity for CXCR4 and support the hypothesis that VH gene replacement contributes to autoantibody formation and plays a potential role in autoimmunity.
It has been proposed that the tyrosine sulfation of VH CDR3 residues represents a unique property of anti-HIV-1 gp120 CD4i Abs that evolved to enhance viral Ag recognition by molecular mimicry of the coreceptor which also contains sulfated tyrosines in its N-terminal domain (31, 32). In this report, biochemical analysis demonstrated that sulfation occurred in four of the seven anti-CXCR4 Abs examined. Importantly, sulfation contributed to the function of three of these Abs with bidirectional effects of increase or decrease in binding affinity for CXCR4. Mutagenesis studies further demonstrated that tyrosine sulfation occurred in VH CDR2 and possibly VL-FW3, areas where tyrosine sulfation had not been previously described (31, 32). These results demonstrate that tyrosine sulfation can directly contribute to the binding activity of Abs that recognize self-Ags. The possible role that tyrosine-sulfated proteins may play in the pathogenesis of autoimmune disease has recently been reviewed (33) and should now be extended, based on this report, to include tyrosine-sulfated autoreactive Abs. The results also suggest that tyrosine sulfation may contribute in a much greater way than previously recognized to the binding activity of Abs that are expressed in mammalian cells and may, in part, be responsible for the often seen increase in binding affinity which has been attributed to the effect of bivalency on Ab avidity when converting monovalent scFvs expressed by phage display into whole human IgGs. Furthermore, because the predictive software for tyrosine sulfation performed poorly in our studies, it is likely that the involvement of tyrosine sulfation on Ab binding will need to be determined on a case-by-case basis until a better understanding of tyrosine sulfation of Ab V regions is obtained and sufficient data is collected.
Two previous studies that examined 12G5 and a panel of seven murine anti-CXCR4 mAbs provided the initial evidence of antigenically distinct conformations of CXCR4. Most of these Abs were mapped to ECL2 and their binding affinities varied within a 2.5-fold range (29, 30). Baribaud et al. (29) demonstrated that CXCR4 is expressed in at least two different conformations on the cell surface that was variable among the different primary cells and cell lines tested. Carnec et al. (30) reported the existence of multiple CXCR4 subpopulations that did not vary in a cell-specific manner. Both groups proposed that the mAbs with highest maximal binding could recognize the widest range of CXCR4 conformations. In the present studies, the panel of anti-CXCR4 scFvFcs demonstrated different binding affinities and levels of maximal binding that were not cell type specific. Indeed, the rank order of maximal scFvFc binding was essentially identical for Jurkat and X4T4 cells. These results suggest that each of these cell lines not only displayed antigenic heterogeneity but also a fixed mixture of different antigenic conformers of CXCR4 (Fig. 3). For example, 12G5, a commonly used conformation-dependent mAb, can only bind to a subpopulation of CXCR4 molecules on the cell surface. The maximal binding of X18 and X20 is much higher than those of X48 and 12G5 suggesting that these Abs recognize more widely expressed or accessible epitopes. The molecular basis of this antigenic heterogeneity is unknown but may involve variability in posttranslational modifications of CXCR4 including N-glycosylation (18, 19, 20), tyrosine (22, 23) and serine chondroitin sulfation (22), and N-terminal processing (26, 27, 28). CXCR4 structure may also vary as a result of conformational fluctuations, receptor oligomerization, neighbor protein associations, and G-protein coupling (30, 55). The relationship between conformational heterogeneity of CXCR4 and certain disease states requires further exploration.
Epitope mapping studies of the Abs using CXCR2/CXCR4 chimeras, binding to N11Q CXCR4 mutant receptor proteins, AMD3100 inhibition and 12G5 competition, demonstrated the complex nature of the epitopes exposed on the surface of this seven transmembrane spanning receptor. Table IV summarizes these findings. The fact that all seven Abs recognized the Nt domain to a variable extent may be related to the enhanced exposure of this region in the CXCR4-PMPLs. Complete loss of 2N and X33 binding to the CXCR4 N11Q glycosylation site mutant demonstrated the critical role of this region in epitope recognition. It should be noted that several Abs exhibited properties of multidomain Abs and each had a unique profile. It was observed that the Abs most dependent on the Nt domain for binding were the least inhibitable by AMD3100, which is in agreement with previous reports that the binding sites for this small molecular bicyclam CXCR4 antagonist are negatively charged aspartates located at amino acid 171 (transmembrane domain (TM) 4), 262 (TM6) as well as 182 (ECL2) and 193 (ECL2) of CXCR4 (56, 57). The moderate inhibition of 6R and X19 binding is likely due to the recognition by both Abs and AMD3100 of Asp262 at the TM6/ECL3 boundary. In addition, it has been suggested that an alteration in conformation of CXCR4 occurs following AMD3100 binding. Because AMD3100 also reacts with two aspartic acid residues in ECL2 and X18 maps to this region, the strong AMD3100 inhibition of X18 binding may be secondary to an overlap between the X18 epitope with the binding site of AMD3100 or the antagonist-induced changes in the structure of CXCR4 that effects the X18 overlap.
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binding while residues in the ECL2 are important for signaling (37, 58, 59). To investigate this relationship in more depth, Ab-mediated inhibition of SDF-1
chemotaxis was examined to identify important structure-function relationships between the epitope recognized and signaling inhibited by the different Abs. Several important observations were made. First, although six of seven Abs inhibited SDF-1
chemotaxis, the inhibition was not uniform. The Abs X18, X20, as well as X48, showed superior inhibition of chemotaxis and there was a strong correlation between inhibition and the amount of Ab that bound to Jurkat cells. Another commonality is that these Abs also recognize an epitope that overlaps with 12G5. Interestingly, 12G5 was a potent chemotaxis inhibitor despite a lower GMFIMAX binding, suggesting that its epitope overlaps with a site critical for SDF-1
signaling presumably located in the ECL2 domain. The Abs that bound to Nt alone (X33) or to Nt and ECL3 (6R, X19) were the weakest inhibitors of chemotaxis and also have the lowest levels of saturable binding. Ab 2N, which is purely Nt binding (Table III), showed no inhibition of chemotaxis. These results confirm previous reports that while Nt is important in SDF-1
binding, there is greater dependence of the extracellular domains of CXCR4, in particular ECL2, in SDF-1
signaling. In summary, CXCR4 exists in multiple antigenic states on the cell surface and a panel of human Abs has been identified to further probe CXCR4 expression and function. All of the Abs recognize the Nt to variable extents and several Abs bind to multiple domains. Thus, these Abs provide important new tools to examine the biology of CXCR4 in greater detail such as the extent to which posttranslational modifications and Nt-proteolytic cleavage of CXCR4 affect antigenic structure (26, 27) as well as the biological activity of the CXCR4-SDF-1 axis in health and disease. In addition, the Abs can be useful in several areas of investigation in which a central involvement of the CXCR4/SDF-1 axis has been established such as in the bone marrow niche for the homing and egress of adult stem cells (60). The expression of CXCR4 isoforms by different cancer cells and cancer stem cells and their importance for cancer cell survival and metastases can now be explored (14, 61) as can the differential expression and effects of these CXCR4 isoforms in neoangiogenesis (62, 63). Although selective modulation of this axis in vivo has tremendous therapeutic potential, the diverse involvement of CXCR4 in so many biological processes will challenge this potential because some level of steady-state homeostasis of CXCR4/SDF-1 is needed for response to physiologic stress or damage as part of the normal host defense and repair mechanism (64). The antigenic complexity of the known intracellular stores of CXCR4 (65) will also need to be considered as will the involvement of CXCR4-expressing cellular microparticles (66, 67) because their mobilization and transfer to the cell surface, respectively, can also lead to new and variable SDF-1 biological responses. Although the challenges of modulating this axis in vivo are formidable, the translational potential is even more compelling. Human mAb immunotherapy may be one way to approach this problem because it has the advantage of targeting defined CXCR4 antigenic structures that can provide some degree of selectivity in vivo.
| Acknowledgments |
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| Disclosures |
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| Footnotes |
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1 This work was supported by National Institutes of Health Grants AI060456 and AI52829 (to W.A.M.), AI58804 (to Q.Z.), as well as a Susan Komen Postdoctoral Fellowship PDF0202044 (to J.S.) from the Susan Komen Breast Cancer Foundation. ![]()
2 Address correspondence and reprint requests to Dr. Wayne A. Marasco, Department of Cancer Immunology and AIDS, Dana-Farber Cancer Institute, Harvard Medical School, 44 Binney Street, Boston, MA 02115. E-mail address: wayne_marasco{at}dfci.harvard.edu ![]()
3 Abbreviations used in this paper: SDF, stromal-derived factor; ECL, extracellular loop; PMPL, paramagnetic proteoliposome; GMFI, geometric mean fluorescence intensity; FW, framework domain; TM, transmembrane domain; MD, multidomain; Nt, N-terminal; VH/VL, variable region of Ig H chain or L chain. ![]()
Received for publication February 13, 2007. Accepted for publication June 11, 2007.
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neutralizing CCR5 antibodies from a phage display human antibody library. Nat. Biotechnol. 16: 778-781. [Medline]This article has been cited by other articles:
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N. S. Longo, G. J. Grundy, J. Lee, M. Gellert, and P. E. Lipsky An Activation-Induced Cytidine Deaminase-Independent Mechanism of Secondary VH Gene Rearrangement in Preimmune Human B Cells J. Immunol., December 1, 2008; 181(11): 7825 - 7834. [Abstract] [Full Text] [PDF] |
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