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Emory Vaccine Center and Department of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA 30322
| Abstract |
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high) was delayed. The remaining MBD2/ memory cells were not fully protective during rechallenge, and memory cell characteristics were altered with regard to surface markers (IL-7R
, KLRG-1, CD27, and others) and cytokine production. The defect was CD8 T cell intrinsic, because memory cell development was also delayed when MBD2/ CD8 T cells were adoptively transferred into SCID mice. These data demonstrate that MBD2 is a previously unrecognized intracellular factor required for the efficient generation of protective memory CD8 T cells. | Introduction |
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chain, preferentially survive the effector immune response, and further differentiate into memory cells with characteristic cell surface markers, homeostatic renewal, increased survival ability, and ability to protect from reinfection (5, 6, 7, 8, 9, 10, 11, 12, 13). Programming or maintenance of functional memory CD8 T cells can depend on CD4 T cell help (14, 15, 16, 17, 18, 19). It is currently unclear what signals dictate the induction of memory CD8 T cells, and what intracellular factors mediate further differentiation of precursor memory cells. In this study, the role of epigenetic gene methylation during both the induction of precursor memory CD8 T cells and their development into memory cells is addressed. The biological consequences of epigenetic gene methylation are mediated by a group of methyl-CpG-binding domain (MBD)3 -containing proteins (20, 21). MBD proteins act as transcriptional repressors and promote the gene-silencing effect of DNA methylation. They recruit multiprotein repressor complexes containing histone deacetylases and nucleosome-remodeling activities into inhibitory chromatin structures. MBD2 is one of five known MBD-containing proteins (22, 23, 24). It is expressed in a subset of tissues, including T cells (23, 25). The closely related MBD3 with 70% identity at the amino acid level is more ubiquitously expressed. MBD2/ mice are viable, fertile, and have lymphocyte populations, while MBD3 deficiency results in embryonic lethality (23, 25). Cell fate decisions of Th lineages are altered in MBD2/ mice, resulting in profound changes in the susceptibility and resistance to parasitic infections (25, 26). Thus, Th cell differentiation is dependent on appropriate gene methylation, as has also been documented by experiments using an inhibitor of methylation (27), and through genetic abrogation of the maintenance methyltransferase Dnmt1 (28, 29).
In the present study, MBD2/ mice were now used to evaluate the role of gene methylation in memory CD8 T cell differentiation after acute viral infection with lymphocytic choriomeningitis virus (LCMV). Results demonstrate notably reduced precursor and memory CD8 T cell induction, as well as a failure to fully protect from reinfection and to acquire several parameters of the memory phenotype. These observations indicate that epigenetic DNA methylation is a critical event in the induction and differentiation of memory CD8 T cells, and that MBD2 is an intracellular regulator of the differentiation. Identifying and understanding signals controlling the generation of memory CD8 T cells could result in new strategies for enhanced memory cell induction in novel vaccination approaches.
| Materials and Methods |
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MBD2/ mice were received from the University of Edinburgh and bred at Emory University. BALB/c, SCID BALB/c, and C57BL/6 mice were from The Jackson Laboratory. Both male and female mice were used for experiments in age- and sex-matched groups. All primary infections were administered i.p. with 2 x 105 PFU of LCMV-Armstrong, while secondary infections were given i.v. with 2 x 106 PFU of LCMV-clone 13 (30). All animal procedures were approved by the Emory University Animal Care and Use Committee.
Flow cytometry and Abs
MHC class I tetramers LdNp118, Dbgp33, DbNp396, and Dbgp276 were used as described (30). Annexin V and all Abs were from BD Pharmingen, except for anti-granzyme B (Caltag Laboratories) and anti-IL-7R
(eBioscience). CD4 T cells were transiently depleted by multiple i.p. injections of 0.5 mg of purified anti-CD4 mAb GK1.5. Intracellular IFN-
and TNF-
production after in vitro stimulation with 1 µM peptides Np118 or gp283 for 5 h was assessed by flow cytometry as previously described (30).
SCID reconstitution
CD8 T cells were purified or depleted from spleen tissue with anti-CD8 magnetic beads (Miltenyi Biotec); the resulting purity was 9598%. A total of 107 CD8+ and/or 7 x 107 other spleen cells (CD8) was mixed and injected i.v. into SCID mice; mice were infected the following day with LCMV-Armstrong.
Virus titers
Virus titers were determined by plaque assay from freeze-thawed homogenized spleen tissue using Vero cell monolayers, essentially as described (31). In brief, three 10-fold serial dilutions of weighed tissue preparations were added to adherent Vero cells, overlaid with medium 199 and agarose, and incubated at 37°C for 4 days. Cells were overlaid with Neutral Red in agarose for 12 h, and plaques were counted.
| Results |
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The consequences of MBD2 abrogation for the differentiation of mature CD8 T cells into effector and memory cells were determined in MBD2/ BALB/c mice following acute infection with LCMV strain Armstrong. In both wild-type and MBD2/ mice, Ag-specific CD8 T cells expanded efficiently in the spleen (Fig. 1, A and B), as determined with tetramer LdNp118 specific for the dominant epitope Np118126 (30, 32). CD8 T cell expansion was also observed in the blood, kidney, liver, and bone marrow (data not shown). The expansion initially proceeded faster in MBD2/ than in wild-type mice, as significantly more Ag-specific CD8+ spleen cells were observed in MBD2/ animals on day 6, but not on day 8, postinfection (p.i.). The virus was cleared rapidly from the spleen in both mouse groups (Fig. 1C), and was also rapidly cleared from kidney and serum (data not shown). There was no evidence of viral persistence past day 8 of infection in either group, and virus did not reappear in any of the tissues at later time points (data not shown). Thus, MBD2/ effector CD8 T cells developed with sufficient ability to clear the LCMV infection.
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The expression of IL-7R
on effector CD8 T cells predicts the further differentiation into memory cells (1, 3, 4). MBD2/ mice displayed a striking reduction in IL-7R
high Ag-specific CD8+ cells at all time points p.i. compared with wild-type mice (Fig. 1, D and E). Reduced IL-7R expression was not due to the inability to express IL-7R
in MBD2/ mice in general, as IL-7R
was expressed on naive CD8 T cells before infection (Fig. 1D). On days 68 p.i., the small fraction of IL-7R
high precursor memory cells seen in wild-type mice was almost absent in MBD mice. The reduction was most evident during the contraction phase on day 14 p.i., when the percentage of precursor memory cells within the Ag-specific cell population was reduced 4-fold in MBD2/ mice compared with wild type (Fig. 1, D and E). Starting on day 14 p.i., IL-7R
high MBD2/ CD8 T cells appeared at low frequency, indicating delayed memory precursor cell induction. The reduction in the percentage of IL-7R
high memory CD8 T cells remained at all later time points (Fig. 1, D and E) and was even observed 220 days p.i. (data not shown), although the differences were no longer statistically significant.
Delayed memory precursor CD8 T cell induction was also observed in MBD2/ mice on the C57BL/6 background. CD8 T cells specific for LCMV epitopes gp33, Np396, and gp276 (30, 33) all expressed less IL-7R
during the T cell contraction phase (Fig. 2) and at later time points (data not shown), indicating that impaired memory cell induction was not limited to the BALB/c background nor to Np118-specific T cells.
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A subset of other activation markers was also expressed differentially in effector MBD2/ and wild-type cells on day 8 p.i. (Fig. 3A), but not in naive cells (data not shown). In addition to IL-7R
, expression of CD44, CD27, and KLRG-1 also differed in MBD2/ and wild-type cells, indicating that multiple molecular alterations took place in effector cells. In contrast, granzyme B, CD43, CD62L, and bcl-2 were similarly expressed. Similar granzyme B expression suggested similar cytotoxic ability in the two mouse strains, which was confirmed in cytotoxicity assays (data not shown). Because the contraction phase seemed more severe in mutant mice, the extent of apoptosis was also analyzed using the early apoptosis marker annexin V (34). MBD2/ cells reacted more efficiently with annexin V compared with wild-type cells during the effector T cell response (Fig. 3A), indicating an elevated level of apoptosis or earlier onset of the contraction phase. All Ag-specific effector MBD2/ CD8 T cells produced the antiviral cytokines IFN-
and TNF-
(Fig. 3B). However, MBD2/ cells selectively produced less IFN-
, but not TNF-
compared with wild-type cells during in vitro stimulation. A reduction in the extent of IFN-
, but not TNF-
production was also observed after stimulation with the subdominant Ld/LCMV epitope gp283 (data not shown). Thus, MBD2/ effector CD8 T cells harbored selective alterations in characteristic effector functions and surface markers, but overall were still able to control LCMV infection.
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Several characteristic markers were differently expressed in long-term memory MBD2/ and wild-type CD8+ spleen cells 60 days p.i. (Fig. 4A). Expression of IL-7R
, CD44, CD27, CD62L, Ly-6C, and antiapoptotic bcl-2 was lower, whereas KLRG-1, CD43, and granzyme B expression was higher in MBD2/ compared with wild-type memory CD8 T cells. This marker profile was consistent with a slower acquisition of memory phenotype and longer retention of effector-like properties in MBD2/ mice. When only the IL-7R
high wild-type and MBD2/ CD8 T cells were compared, differences in CD44, KLRG-1, CD27, bcl-2, and granzyme B expression remained (data not shown), indicating that the changes were not simply a consequence of lower IL-7R
expression. Cytokine receptors CD122 (IL-2R
and IL-15R
), CD25 (IL-2R
), and IL-15R
were similarly expressed in MBD2/ and wild-type memory CD8 T cells (Fig. 4A), indicating that the characteristic up-regulation of these molecules in memory CD8 T cells was not affected.
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was also observed in memory MBD2/ compared with wild-type CD8 T cells. The mean fluorescence intensity of IFN-
+ cells was reduced in MBD2-deficient memory cells compared with wild-type cells when the intracellular IFN-
content was determined by flow cytometry (Fig. 4B), but all of the mutant Ag-specific memory cells produced some IFN-
. In addition, MBD2/ memory cells specific for the subdominant Ld/LCMV epitope gp283 also produced less IFN-
compared with wild-type cells (Fig. 4B). Thus, although MBD2/ memory cells appeared more effector-like than normal memory cells with regard to characteristic markers, the production of the antiviral effector cytokine IFN-
was nevertheless suboptimal in MBD2/ memory cells. Impaired MBD2/ CD8 T cell response after secondary infection
The ultimate purpose of memory lymphocytes is to persist and provide protection from reinfection. MBD2/ and control mice were challenged 90 days after primary LCMV-Armstrong exposure with a second infection using the more virulent LCMV strain clone 13, which also harbors the Np118 epitope. MBD2/ memory cells did not eliminate the secondary infection as efficiently as wild-type cells in these conditions (Fig. 4C). In wild-type animals, secondary LCMV infection is rapidly cleared, and is hardly detectable 2 days after reinfection. In striking contrast, in MBD2/ mice, LCMV levels in the spleen were 1000-fold higher than in wild-type mice 2 days after reinfection. Virus levels remained robust in mutant mice until day 5 p.i., while they were no longer detectable in wild-type animals 3 days p.i. The delay in viral clearance and the increased viral burden after reinfection indicate that MBD2 is required for the effective induction of protective immunity.
MBD2/ and wild-type LdNp118-specific memory CD8 T cells both mounted a sizeable proliferative response to secondary challenge (Fig. 4C, left panel). Four days after reinfection, the percentage of LCMV-specific CD8 T cells in the blood was not statistically different in MBD2/ and wild-type mice. However, despite the brief expansion of MBD2/ CD8 T cells, the contraction of the secondary CD8 T cell response was more severe in MBD2/ than in wild-type mice. Starting on day 8 after second infection, the percentage of LCMV-specific CD8 T lymphocytes in the blood was significantly lower in MBD2/ than in wild-type mice, ultimately resulting in a 5- to 6-fold reduction in secondary memory MBD2/ CD8 T cells compared with wild-type cells. The faster decline of the expanded secondary effector MBD2/ cells between days 4 and 8 after second infection happened despite the increase in viral Ag in MBD2/ mice during this time frame. Thus, the secondary MBD2/ effector cells were less able to control the infection compared with wild-type cells, and this might be due to their altered differentiation status, as evidenced by the marker profile before reinfection, due to the reduced ability to produce the antiviral cytokine IFN-
or due to an increased susceptibility to cell death. In MBD2/ mice, re-expression of IL-7R
was again delayed and remained severely reduced compared with wild-type mice (Fig. 4C, right panel). Thus, the alterations in surface markers in MBD2/ memory T cells were not corrected by repeated Ag exposure. In summary, second infection with cognate pathogen did not boost the long-lasting memory CD8 T cell population in MBD2-deficient as significantly as in wild-type mice, and did not result in the typical lasting increase in the frequency of memory CD8 T cells.
Impaired memory CD8 T cell induction is a CD8-intrinsic defect
Impaired memory CD8 T cell induction could be explained by CD8 T cell-intrinsic defects such as alterations in gene-silencing events. However, it is also possible that other MBD2-deficient cell types provide altered signals to CD8 T cells, such as inadequate help by MBD2/ CD4 T cells. Precursor memory CD8 T cell induction was studied after depletion of CD4+ cells with Abs during LCMV infection (Fig. 5A). Removing Th cells had no effect on the impaired induction of precursor memory CD8 T cells in MBD2/ mice, indicating that signals from helper cells were not the cause of impaired memory CD8 T cell induction.
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expression was examined on Ag-specific cells. When donor CD8 T cells were MBD2 deficient, only 4.66.5% of the cells became IL-7R
high on day 8 p.i., compared with 9.811.7% from wild-type donors (Fig. 5B). Thus, memory precursor induction was only reduced when donor CD8 T cells were of MBD2/ genotype and transfer of CD8 cells from either wild-type or MBD2/ donors did not significantly determine IL-7R
expression on CD8+ cells. The reduction in IL-7R
high memory cells was also seen in the spleen at later time points, including during the memory phase (Fig. 5B, lower panel). Therefore, impaired precursor and memory cell induction in MBD2/ mice is due to a CD8 T cell-intrinsic defect, and MBD2 is an intracellular regulator of CD8 T cell differentiation events. | Discussion |
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The cells that will become memory CD8 T cells can first be identified during the effector immune response by high expression of IL-7R
(1, 2, 3, 4). It is currently not known how and when cells are selected for this precursor memory cell fate. Precursor fate induction could be due to unknown signals that lead to high IL-7R
expression in a subset of cells, or due to survival of cells with stochastically highest IL-7R
expression. MBD2 deficiency resulted in a significant reduction and delay in precursor memory cell appearance, indicating that MBD2 plays a role in the normal induction of these cells. The data therefore support a model in which precursor memory cell induction is the result of intracellular signals mediated by MBD2, rather than the result of survival of cells with stochastically highest IL-7R
expression. Because MBD2 is a molecular mediator of DNA methylation, the results also demonstrate that epigenetic gene-silencing signals are involved in memory CD8 T cell differentiation. Importantly, such gene-silencing events might already take place during the induction of precursor memory cells, and not only during subsequent further differentiation of effector cells into memory cells.
Specific target genes of MBD2 in CD8 T cells have not been identified and are under current investigation. It is likely that MBD2 silences the expression of effector-type genes, as such genes can undergo methylation during memory cell differentiation (36). Hence, MBD2-deficient memory cells retain many effector-like properties. Many factors were improperly expressed in MBD2/ mice, including overexpressed and underexpressed molecules (e.g., KLRG-1, CD43 or IL-7R
, CD44, respectively). Because MBD2 is a transcriptional repressor, only overexpression of targets is expected during MBD2 deficiency. IL-7R
is not a likely direct target gene, because its expression is lower rather than higher in MBD2/ CD8 T cells. The multiple changes in gene expression might be a consequence of defective programming of the memory cell fate, rather than due to direct, individual regulation of all of the genetic loci by MBD2.
The reduction in memory cells in MBD2/ mice was only significant at early memory time points (days 21 and 28 p.i.). At later time points, memory cell numbers recovered in MBD2/ mice, although they still did not provide adequate protection 90 days p.i. (Fig. 4C). Recovery might be due to efficient homeostatic proliferation and even expansion of the few initially induced MBD2/ memory cells. Memory CD8 T cell homeostatic proliferation is regulated by cytokine signaling through the IL-15R and the IL-7R (2, 37, 38, 39, 40, 41). In contrast to the IL-7R
chain, cytokine receptors CD122 (IL-2R
and IL-15R
) and IL-15R
were efficiently up-regulated in memory cells in MBD2/ mice (Fig. 4A), and this might allow for efficient homeostatic proliferation. Genetic abrogation of transcription factors T-bet and Eomesodermin alters the expression of CD122 and IL-15R
in memory CD8 T cells (42, 43, 44, 45). Abrogating MBD2 and T-bet/Eomesodermin expression therefore has different effects on the phenotype of memory CD8 T cells, and these transcription factors regulate the expression of different genes in memory CD8 T cells.
The delayed appearance of memory CD8 T cells might also be due to redundancy between MBD2 and MBD3. MBD3, the ubiquitously expressed relative of MBD2 with 70% homology, might be able to carry out part of MBD2s function with reduced efficiency. In addition, MBD2 acts as a corepressor within the abundant transcriptional repressor complex Mi-2/NuRD (23, 24). This multiprotein complex contains both cell type-specific and ubiquitous factors. Abrogating MBD2 alone might not fully reactivate gene expression of targets of Mi-2/NuRD, as the remaining complex might still carry out some biological functions inefficiently. Interestingly, in B cells, cell type-specific subunits of Mi-2/NuRD recruit the repressor to specific promoters, and this regulates plasma cell fate decision during B lymphocyte differentiation in germinal centers (46). It will be important to establish for CD8 T cells whether MBD2 is indeed a component of Mi-2/NuRD, and to identify other subunits, molecular targets, and signals that recruit Mi-2/NuRD to target promoters. This could help reveal novel molecular determinants of CD8 T cell differentiation, and might elucidate which cells become memory cells and how the cell fate decision is molecularly determined.
| Acknowledgments |
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| Disclosures |
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| Footnotes |
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1 This work was supported by National Institutes of Health primary caretaker technical assistance supplement to Grant 3 U19 AI057266-02S1. ![]()
2 Address correspondence and reprint requests to Dr. Ellen N. Kersh, Emory Vaccine Center, Rollins Research Building, Room G211, 1510 Clifton Road, Atlanta, GA 30322. E-mail address: ekersh{at}emory.edu ![]()
3 Abbreviations used in this paper: MBD, methyl-CpG-binding domain protein; ko, knockout; LCMV, lymphocytic choriomeningitis virus; p.i., postinfection; MFI, mean fluorescence intensity. ![]()
Received for publication March 28, 2006. Accepted for publication July 4, 2006.
| References |
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gene occurs in memory but not naive CD8 T cells. J. Immunol. 176: 4083-4093. This article has been cited by other articles:
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