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Is Essential to Maintain CIITA Gene Expression in B Cells1

* Department of Microbiology and Immunology, Indiana University School of Medicine and Walther Oncology Center, Indianapolis, IN 46202; and
Department of Chemistry, Inha University, Incheon, Korea
| Abstract |
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(PKC
). PKC
controls CIITA gene transcription mainly via modulating CREB recruitment to the CIITA promoter without affecting CIITA mRNA stability. Inhibition of PKC
by a pharmacological inhibitor or knocking down of endogenous PKC
expression by small interfering RNA reduced CREB binding to the CIITA promoter. The decrease of CIITA gene expression in the presence of the PKC
inhibitor was prevented by ectopically expressing a constitutively active form of CREB. In addition, histone acetylation of the CIITA promoter is regulated by PKC
since the PKC
inhibitor treatment or PKC
small interfering RNA resulted in decreased histone acetylation. Taken together, our study reveals that PKC
is an important signaling molecule necessary to maintain CIITA and MHC class II expression in B cells. | Introduction |
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in macrophages or other cell types (1, 2, 3, 4, 5). Studies have shown that protein kinase C (PKC)3 is involved in constitutive as well as inducible expression of MHC class II genes (6, 7, 8, 9). In B cells, activated HLA-DR expression by PMA is dependent on PKC (8). This activation is mediated by the proximal elements of the DR
promoter (8). IFN-
-inducible expression of the MHC class II gene is also regulated by PKC (9). Both constitutive and inducible expression of the MHC class II gene require CIITA (10, 11). CIITA is not a DNA-binding protein. Rather, CIITA acts as a scaffolding protein by interacting with itself and other transcription factors to activate the MHC class II promoter (12, 13, 14, 15, 16). Three different isoforms of CIITA have been identified, each transcribed from a separate, independently regulated promoter designated as pI, pIII, and pIV (17). In B cells, pIII is primarily used for the constitutive expression of CIITA. pI and pIV are responsible for CIITA transcription in monocytes/dendritic cells and cells that express CIITA upon IFN-
treatment, respectively (18).
A recent study reported that PKC
enhances the ability of IFN regulatory factor 1 to activate the IFN-
-inducible promoter of the CIITA gene, which is responsible for increased MHC class II expression (9). In contrast, PMA treatment of promyelocytic cells induces them to differentiate into macrophage-like cells and destabilizes CIITA mRNA, resulting in reduced MHC class II expression (19). Therefore, PKC seems to regulate CIITA expression in a cell-type specific manner. However, the underlying mechanisms by which PKC induces MHC class II expression in B cells are not understood.
PKC is a serine/threonine-specific protein kinase and is involved in a number of important biological events, such as cell cycle progression, apoptosis, differentiation, and immune responses (20, 21, 22, 23). At present, 11 different PKC isoforms have been identified and grouped into three subsets based on their ability to respond to Ca2+ and/or diacylglycerols (24, 25). Both the classical PKC isoforms,
,
I,
II, and
, and the novel PKC isoforms, including
,
,
, and
are activated by diacylglycerols or PMA. The classical PKC, but not the novel PKC, respond to a change of the intracellular calcium level. Unlike classical and novel PKC isoforms, atypical PKC isoforms, such as
and 
, do not respond to either Ca2+ or PMA.
B cells express several PKC isoforms that have different substrate specificities as well as unique functions (26, 27). In mature B cells, PKC
controls NF-
B activation and cell survival (23). PKC
-deficient mice show an alteration in the development of secondary lymphoid tissues due to the impairment of signaling through the BCR, which results in inhibition of cell proliferation and survival (28). PKC
is highly expressed in B cells and regulates B cell tolerance (26, 29). Recently, it has shown that PKC
activates CREB in B cells upon BCR ligation (30). CREB belongs to the CREB/activating transcription factor bZip family of transcription factors and binds to a cAMP-responsive element (CRE) as a homodimer or a heterodimer with either CREB/activating transcription factor or AP-1 transcription factors (31). CREB activates numerous genes including the MHC class II and the CIITA gene by directly binding to the promoters (32, 33). For the CIITA gene, several CREs have been identified in the proximal promoter and in the 5'-untranslated region of pIII (33). In addition, CREB binding to CRE on the CIITA promoter is necessary to activate CIITA gene expression (33).
In this study, we investigated the role of PKC
in the regulation of CIITA gene expression in B cells. Our data show that PKC
controls CIITA gene expression by modulating phosphorylation of CREB that affects CREB recruitment to the CIITA promoter. In addition, PKC
is necessary for maximum histone acetylation of the CIITA promoter. Together, these data support a critical role for PKC
in B cell CIITA gene expression.
| Materials and Methods |
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Raji, M12, and splenic B cells were maintained in RPMI 1640 medium supplemented with 10% FBS, 2 mM L-glutamine, and 100 U/ml penicillin/streptomycin. T2 and Priess, provided by Dr. J. Blum (Indiana University, Indianapolis, IN), were grown in IMDM with the same supplements. Mouse splenic B cells were prepared as described previously (34).
Reagents and Abs
PMA, Lactacystin, actinomycin D, Ro-31-8425, GO-6976, and Rottlerin were obtained from Calbiochem. MTT and chloroquine were purchased from Sigma-Aldrich. Human PKC
(sc-36253) and control small interfering (si) RNA (sc-37007) were purchased from Santa Cruz Biotechnology. Abs against
-actin and ubiquitin were obtained from Sigma-Aldrich and Santa Cruz Biotechnology, respectively. Anti-RFX5 and anti-phospho-CREB and anti-CREB were purchased from Rockland and Cell Signaling Technology, respectively. Anti-CIITA and anti-human MHC class II Ab were described elsewhere (34). Abs against CREB and acetylated histone H4, and CIITA (sc-13556X) for chromatin immunoprecipitation (ChIP) were purchased from Upstate Biotechnology and Santa Cruz Biotechnology, respectively.
MTT assay
Cell viability was determined using the colorimetric assay with MTT. The MTT assay measures cell survival based on mitochondrial conversion of MTT from a soluble tetrazolium salt into an insoluble colored formazan precipitate, which is dissolved in DMSO and quantitated by spectrophotometry. Cells (5 x 104) were seeded in 48-well plates in the presence of 5 µM Rottlerin or in an equal volume of DMSO for the indicated time. MTT (1 mg/ml final concentration) was added to the cells at the end of the experiments followed by incubation for 1 h at 37°C. DMSO was added to lyse the cells before measuring absorbance at 590 nm.
Transient transfection
Wild-type (WT) and a dominant negative (DN) mutant (K376R) of PKC
, MHC class II E
-driven promoter, were reported previously (35). The CIITA promoter-driven luciferase construct was obtained from Dr. J. P.-Y. Ting (University of North Carolina, Chapel Hill, NC) (39). The constitutively active (CA-CREB) and the repressive form of CREB (R-CREB) that were described previously (40, 41) were obtained from Dr. R. P. S. Kwok (University of Michigan, Ann Arbor, MI). Raji cells (5 x 106) were transfected with 15 µg of the reporter plasmid using electroporation. Twenty-four hours after transfection, cells were treated with Rottlerin or DMSO for 6 h. In some experiments, the reporter was cotransfected with WT, DN PKC
, CA-CREB, or R-CREB (15 µg) expression vector for 48 h. The total DNA amount was adjusted by adding empty vector DNA. PKC
or control siRNA along with the GFP expression vector was introduced using Nucleofection with the reagents and the protocol provided by the manufacturer (Amaxa). GFP-positive cells were sorted by flow cytometry. Cell lysates were prepared and used for luciferase assay as described previously(36), immunoblot, or ChIP assay. Luciferase activity in each group was normalized by protein concentration. The results were expressed as relative luciferase activity. All experiments were performed in duplicate and repeated several times with similar results.
Quantitative real-time RT-PCR (qRT-PCR) and RT-PCR
Total RNA was prepared using TRIzol (Invitrogen Life Technologies). cDNA preparation and qRT-PCR were performed as described elsewhere (42). Primers and concentrations used for qRT-PCR were: human CIITA sense (900 nM), 5'-CTGAAGGATGTGGAAGACCTGGGAAAGC-3'; antisense (900 nM), 5'-GTCCCCGATCTTGTTCTCACTC-3'; human actin sense (300 nM), 5'-CCTTCCTGGGCATGGACTCCT-3'; and human actin antisense (300 nM), 5'-GGAGCA-ATGAATCTTGATCTT-3'.
RT-PCR was performed as described previously (43). The primers for the mouse CIITA gene were: sense, 5'-CTCAGCCTTAGGAGGGACTTG-3'; and antisense, 5'-GACCTGGATCGTCTCGTGCAG-3'. Primers for mouse hypoxanthine phosphoribosyltransferase were: sense, 5'-AGCTGTGGACAAAGCCAACT-3'; and antisense, 5'-TTGGGCTCTCTCAGTTCCAC-3'.
Immunoblotting
Total cell lysates were used for Western blot analysis as previously described (34). To assess CIITA expression, 30 µg of proteins from cell lines or 100 µg of splenic B cell lysates was subjected to SDS-PAGE on 6% slab gels. The same membrane was used to detect CIITA followed by RFX5. To examine MHC class II or actin, 10% slab gels were used. Relative expression levels of each band were calculated using an optical unit obtained by a densitometric analysis (FluorChem 8900 Imaging System; Alpha Innotech). To detect the CREB signal, 15 or 40 µg of protein lysates was used for SDS-PAGE. Phosphorylation of CREB was detected with the anti-pCREB Ab. The same membrane was used to detect total CREB. PKC
protein level was assessed with 30-µg protein lysates. The amount of ubiquitin was determined with the Ab recognizing ubiquitin using 15 µg of protein lysates.
ChIP
ChIP assay was performed using the Upstate Biotechnology protocol (
http://www.upstate.com/misc/protocols.q.prot.e.chips/
). Approximately 1 x 107 cells were used for each chromatin preparation. The chromatin sample from cells cross-linked with formaldehyde and sonicated was precleared with salmon sperm DNA and protein A-Sepharose. Two percent of the sample was used for input. One-seventh of the samples (1.5 x 106 cells) was used for immunoprecipitation with the Ab recognizing CREB, acetylated histone H4, or CIITA. Immune complexes were collected with protein A-Sepharose beads and eluted. After reverse cross-linking and digestion of proteins with proteinase K, the DNA was purified by phenol/chloroform extraction. PCR was performed using primers designed to amplify the 184-bp fragments which contain CRE of the CIITA promoter pIII (33) or the 90-bp fragment which contains the WXY region of the DR
promoter (32).
| Results |
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down-regulates the level of CIITA protein
To investigate whether PKC has an effect on CIITA expression, we treated Raji cells with PMA to activate PKC. We observed that the CIITA protein level was enhanced by PMA treatment, while RFX5, another transcription factor for MHC class II, was not affected (Fig. 1A, first lane of each group). CIITA protein is often detected as a doublet due to phosphorylation (36, 37, 38) and PMA increased the expression of both species of CIITA protein. PMA is known to activate several PKC isoforms (24, 25); therefore, we next examined which PKC isoforms are responsible for the change in the CIITA protein level. We treated Raji cells with pharmacological PKC blockers with different specificities: Ro-31-8425 for PKC
,
,
and
; GO-6976 for PKC
and
; and Rottlerin for PKC
. As shown in Fig. 1A, Rottlerin, but not the other inhibitors, severely diminished the CIITA protein level, regardless of PMA treatment, indicating the involvement of PKC
. Despite a lower level of CIITA, the amount of MHC class II protein remained unchanged, possibly due to a longer half-life of MHC class II protein (Fig. 1A, third panel). RFX5 levels were comparable among all conditions (Fig. 1A, second panel).
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Next, we tested whether the reduction of CIITA protein levels by Rottlerin could be observed in other B cells. To address this, we examined two additional human B cell lines (T2 and Priess), a mouse B cell line (M12), and splenic B220+ B cells. All B cells responded similarly to Rottlerin by showing decreased CIITA protein in the presence of Rottlerin (Fig. 1, E and F). Taken together, the data suggest that PKC
seems to be important for CIITA protein expression in B cells.
Decreased CIITA protein by the PKC
inhibitor was not due to enhanced protein degradation
It is reported that the half-life of CIITA protein is
30 min and that CIITA is degraded by the proteosome-mediated pathway (44). Therefore, it is possible that the effects of PMA and Rottlerin that we have observed might have been due to an alteration in the stability of CIITA protein. To test this, we compared the level of CIITA protein in Raji cells that were cultured with or without the proteosome inhibitor lactacystin for 30 min before a 6-h culture in the presence or absence of Rottlerin. As shown in Fig. 2A, CIITA protein levels were comparable among cells treated in the described conditions. Lactacystin treatment resulted in an accumulation of ubiquitinated proteins, indicating that lactacystin prevented the degradation of ubiquitinated proteins by proteosomes (Fig. 2A, bottom panel). Neither MG132 nor ALLN, other proteosome inhibitors, prevented the effects of PKC
inhibition (data not shown). We next tested a lysosome inhibitor, chloroquine, because lysosomes are also involved in protein degradation (45). Similar to proteosome inhibitor-treated cells, chloroquine did not prevent the reduction of CIITA protein by Rottlerin (Fig. 2B). Therefore, the reduced CIITA protein level resulting from treatment with Rottlerin is unlikely due to enhanced degradation of CIITA protein.
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inhibitor down-regulates the CIITA mRNA level
We next investigated whether the reduction of CIITA protein by Rottlerin results from decreased CIITA mRNA. RNA was prepared from Raji cells that were treated with the PKC inhibitors described above and analyzed by qRT-PCR. The amount of CIITA but not MHC class II mRNA was significantly reduced in Raji cells treated with Rottlerin but not with the other PKC inhibitors (Fig. 3, AC). Consistent with the protein data, other B cells, including splenic B cells, showed a significant decrease in CIITA mRNA levels upon Rottlerin treatment (Fig. 3, D and E). Thus, the changes in CIITA mRNA following Rottlerin treatment corresponded to the protein level, suggesting that PKC
regulates CIITA expression at the mRNA level.
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regulates CIITA promoter activityThe decrease in CIITA mRNA could be due to a change in mRNA stability or promoter activity. To distinguish these possibilities, we first compared CIITA mRNA stability by measuring the half-life of CIITA mRNA. Raji cells were pretreated with Rottlerin or DMSO for 1 h and then actinomycin D was added to stop new RNA synthesis. Total RNA was prepared and the amount of CIITA mRNA was measured using qRT-PCR. As shown in Fig. 4A, we did not observe a significant difference in CIITA mRNA stability in the presence or absence of Rottlerin.
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To further confirm whether the Rottlerin effect was mediated by PKC
, we cotransfected the expression vector encoding WT or a DN PKC
mutant along with the luciferase reporters. Consistent with the effect of Rottlerin, cells cotransfected with DN but not WT PKC
showed a decrease in both CIITA and MHC class II promoter-driven luciferase activity (Fig. 4, D and E). Together, the data suggest that PKC
regulates CIITA gene expression, which in turn controls the MHC class II gene in B cells.
Regulation of CIITA expression by PKC
is mediated by CREB
CREB binds to the CIITA promoter and is necessary for CIITA gene expression (33). In addition, a recent study demonstrated that PKC
phosphorylates CREB (30). Therefore, we wondered whether the PKC
effect on CIITA gene expression is mediated via CREB phosphorylation. To examine this possibility, we first assessed the phosphorylation status of CREB. Phosphorylated CREB (pCREB) was present in Raji cells but the level was decreased by Rottlerin treatment either with or without PMA (Fig. 5A). Therefore, CREB is constitutively phosphorylated in B cells and phosphorylation is regulated by PKC
signaling. Since pCREB is known to bind DNA and activates transcription, we tested whether CREB recruitment to the CIITA promoter is altered in the presence of Rottlerin using a ChIP assay. As we expected, CREB bound to the CIITA promoter constitutively and its binding was attenuated in the presence of Rottlerin (Fig. 5B). CREB also binds the histone acetyltransferase (HAT) CREB binding protein (CBP), resulting in enhanced histone acetylation (40). Therefore, we compared the amount of histone acetylation of the CIITA promoter. Consistent with the data showing CREB binding on the CIITA promoter, histone acetylation was greatly diminished in cells treated with Rottlerin (Fig. 5B, middle panel).
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appears to regulate CIITA gene expression by modulating CREB phosphorylation and influencing CREB binding to the CIITA promoter.
Reduction of endogenous PKC
protein down-regulates CIITA
So far, we have shown that CIITA gene expression is regulated by PKC signaling by treating cells with a pharmacological inhibitor or expressing a dominant mutant form of PKC
. To test whether the reduction of endogenous PKC
would result in a negative effect on CIITA expression, we used a knock-down approach using siRNA. Raji cells were transfected with control or PKC
siRNA along with an expression vector encoding GFP. GFP-positive cells were then sorted to enrich siRNA-transfected cells and cell lysates were prepared to compare CIITA expression. As expected, PKC
siRNA-, not control siRNA-, transfected cells showed a significant decrease in the PKC
level (Fig. 6A). Treatment with PKC
siRNA not only decreased CIITA protein levels, but also MHC class II expression, which differs from results using Rottlerin. Again, there was no difference in the levels of RFX5 between control and siRNA-transfected cells (Fig. 6A). When we assessed CREB recruitment and histone acetylation of the CIITA promoter, both were diminished in PKC
siRNA-transfected cells (Fig. 6B). As a consequence, CIITA binding to the MHC class II promoter was also reduced (Fig. 6C). Therefore, PKC
plays an important role in maintaining CIITA gene expression and consequently regulating MHC class II gene expression in B cells.
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| Discussion |
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. PKC
regulates CIITA gene expression through modulating CREB recruitment to the CIITA promoter. In addition, histone acetylation of the CIITA promoter is regulated by PKC
. The basal activity of PKC
seems to be important for CIITA gene expression, since the CIITA protein level was decreased in PKC
siRNA-transfected cells, in the absence of an external stimulus. Consistent with this observation, pCREB in B cells appears to be sufficient to maintain CIITA gene expression. Moreover, constitutive phosphorylation of CREB and CREB binding to the CIITA promoter is at least partly PKC
dependent as demonstrated by reduced pCREB levels and promoter occupancy following Rottlerin treatment.
CREB also binds to the X2 box of the MHC class II promoter and activates transcription (32). PKC is known to up-regulate MHC class II expression (8) and, therefore, the positive effect of PKC on MHC class II gene expression may be mediated by direct activation of the MHC class II promoter by CREB, through the regulation of CIITA gene expression, or by both. However, we did not observe a difference in MHC class II protein or mRNA in cells treated with Rottlerin for 6 h. This is most likely due to longer half-lives of MHC class II mRNA and protein compared with those of CIITA. Consistent with this notion, cells expressing less endogenous PKC
24 h following PKC
siRNA transfection expressed a low amount of MHC class II protein. We also showed that the RFX5 level was not changed in the presence of the PKC
inhibitor or PKC
siRNA-transfected cells. Therefore, CIITA is susceptible to inhibition of PKC
signaling which results in down-regulation of MHC class II expression.
We also observed diminished histone acetylation on the CIITA promoter in the presence of the PKC
inhibitor as well as in cells transfected with PKC
siRNA. Histone acetylation is mediated by a family of histone acetyltransferases (HAT) and therefore modulating the enzymatic activity of HAT would affect gene expression. There are at least two possible explanations for the reduced histone acetylation at the CIITA promoter. First, PKC
can promote HAT activity directly. However, a study reported that PKC
inhibits intrinsic HAT activity of p300 in HeLa cells (46). This report contradicts our finding that the inhibition of PKC
decreases histone acetylation of the CIITA promoter. Although we cannot rule out that PKC
modulates other HAT members, the decrease in histone acetylation of the CIITA promoter may not be a direct consequence of the PKC
effect on HAT. Alternatively and more likely, the recruitment of CREB-interacting HAT such as CBP to the CIITA promoter could be diminished if less CREB is available on the promoter. CREB is phosphorylated by PKA as well as PKC and pCREB binds to the target promoter activating transcription (47, 48). It remains to be determined whether PKC
-mediated phosphorylation of CREB is necessary for CREB to interact with CBP and to maintain CIITA gene expression in B cells.
We showed that PKC
inhibition did not alter CIITA mRNA stability in Raji B cells. However, it has been shown that PMA reduces CIITA mRNA levels in myelomonocytic cells due to decreased mRNA stability (19), suggesting that the effect of the PKC on CIITA expression is cell type specific. This is not surprising since CIITA expression is cell-type dependent, and each cell type might operate through a distinct mechanism to regulate MHC class II expression (17). Moreover, the CIITA locus has three promoters and each promoter is transcribed in a cell-type dependent manner (19). The regulatory elements of each promoter are different and thus their response to PKC would be distinct as well. In this regard, PKC
is reported to regulate the IFN-
-inducible promoter of the CIITA gene in macrophage cell lines (9), though we observed no significant difference in CIITA expression by a PKC
inhibitor in B cells (Figs. 1A and 3A). Because a CREB binding site is not found within the proximal region of the IFN-
-inducible promoter of the CIITA gene (18), it is likely that PKC
and PKC
utilize different promoter elements to regulate CIITA gene transcription. Indeed, PKC
-mediated regulation of CIITA expression depends on IFN regulatory factor 1 (9), while, as we demonstrated in this study, PKC
modulates CREB.
Mice deficient in PKC
show a normal development of lymphocytes but enlarged spleens and lymph nodes (29). This is attributed to a higher B cell proliferation rate in PKC
/ compared with the control mice, suggesting that PKC
is involved in negative regulation of B cell proliferation (49). PKC
/ mice also exhibit autoreactive anti-DNA and anti-nuclear Abs in the serum (29). Therefore, PKC
may be essential for inducing tolerance of B cell-mediated immune responses. However, it was not reported whether MHC class II expression is altered in PKC
/ B cells. If there is no difference in MHC class II expression in PKC
/ B cells, it could be due to the functional redundancy among PKC isoforms with respect to MHC class II gene expression. Further investigation is warranted to delineate signaling pathways responsible for maintaining or inducing CIITA gene expression, which ultimately controls the Ag presentation function of B cells.
| Acknowledgments |
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| Disclosures |
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| Footnotes |
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1 This work was partly supported by National Institutes of Health Grant AI53556 (to C.-H.C.) and the Indiana Genomics Initiative (INGEN) of Indiana University. INGEN is supported in part by a Lily Endowment. ![]()
2 Address correspondence and reprint requests to Dr. Cheong-Hee Chang, Department of Microbiology and Immunology, Walther Oncology Center, R2-302, 950 West Walnut Street, Indiana University School of Medicine, Indianapolis, IN 46202-5188. E-mail address: chechang{at}iupui.edu ![]()
3 Abbreviations used in this paper: PKC, protein kinase C; qRT-PCR, quantitative real-time RT-PCR; HAT, histone acetyltransferase; WT, wild type; DN, dominant negative; CA-CREB, constitutively active CREB; R-CREB, repressive form of CREB; CRE, cAMP-responsive element; si, small interfering; ChIP, chromatin immunoprecipitation; pCREB, phosphorylated CREB; CBP, CREB binding protein. ![]()
Received for publication December 30, 2005. Accepted for publication April 25, 2006.
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