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* Laboratory of Tumor Immunology,
Cancer Immunotherapy and Gene Therapy Program, DIBIT,
Unit of Thoracic Surgery,
Department of Oncology, Scientific Institute H. San Raffaele, Milan, Italy; and
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Consiglio Nazionale delle Ricerche-Istituto di Chimica del Riconoscimento Molecolare, Milan, Italy
| Abstract |
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- producing CD4+ T cells in two patients. Our data indicate that CD4+ immune responses against CEA develop in neoplastic patients, suggesting that tolerance toward CEA or cross-reactive CD66 homologous molecules might be either not absolute or be overcome in the neoplastic disease. | Introduction |
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It has been recently reported (4), however, that human medullary thymic epithelial cells express CEA. Moreover, CEA, or CD66e, belongs to the CD66 Ig supergene family that also comprises molecules (5), which in addition to epithelial cells, are expressed in normal cells of hemopoietic origin (i.e., neutrophils) and share with CEA regions of high homology (5). These considerations raise concerns both on the possible existence of central or peripheral tolerance interfering with the in vivo development of anti-CEA immunity and the induction of autoimmunity in therapeutic settings.
Evidences exist that CEA is immunogenic: 1) anti-CEA Abs were found in the sera of colon and breast cancer patients (6, 7), 2) cancer vaccines expressing CEA have induced T cell responses in vaccinated patients (8, 9, 10, 11, 12), and 3) CEA epitopes recognized by CD8+ (13, 14, 15, 16, 17) and CD4+ (18, 19, 20, 21) T cells have been identified after in vitro priming with repeated peptide stimulation.
Little is known so far, however, about spontaneous anti-CEA T cell immunity in neoplastic patients. Naturally elicited anti-CEA CD8+ T cell responses have been shown in colon cancer, but not in breast cancer patients (22), while evidence of CD4+ T cell immunity against CEA is still lacking.
Among CEA-expressing tumors, lung cancer is the leading cancer killer in both men and women. Therefore, we decided to address the existence of spontaneous anti-CEA CD4+ T cell responses in the blood of lung cancer patients. To this aim, we first identified CEA sequences forming naturally processed epitopes, and then used the identified epitopes to test their recognition by CD4+ T cells from the patients. Collectively, our data demonstrate that CEA induces in vivo spontaneous CD4+ T cell immunity.
| Materials and Methods |
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PBMC were obtained from seven healthy subjects and eight lung cancer patients. The Institutional Ethics Committee had approved the study protocol and informed consent was obtained from all donors before blood sampling. Lung adenocarcinoma Calu-1 (DR*07, DR*14) and colon carcinoma Lovo (DR*13) cell lines were purchased from the American Type Culture Collection (ATCC). HLA-DR homozygous LCL used were: Com (DR*03), established in our laboratory; TEM (DR*14), provided by K. Fleischhauer (H. San Raffaele, Milan, Italy); and Pitout (DR*07), purchased from the European Collection of Cell Culture (Salisbury, U.K.).
Selection and synthesis of CEA peptides
Selection of CEA sequences, based on the TEPITOPE algorithm (23), has been previously described (19). The CEA sequences used here are reported in Table I. Sequences corresponding to analogs on homologous proteins CD66a, b, c, and d were also synthesized: CD66a/c99111 (ETIYPNASLLIQN), CD66b99111 (ETIYPNASLLMRN), CD66d99111 (ETIYTNASLLIQN), CD66a247259 (TYYRPGANLSLSC), CD66b247259 (TYYHAGVNLNLSC), and CD66c247259 (ANYRPGENLNLSC). CEA and analog sequences were synthesized by the stepwise solid-phase method as previously described (24), and synthetic peptides were purified by semipreparative reverse-phase HPLC. The purity of the peptides was confirmed by analytical reverse-phase HPLC, and the mass was determined by MALDI-TOF analysis with a Voyager-RP Biospectrometry Workstation (PE Biosystem). Observed experimental values were in agreement with the theoretical calculated ones. The peptides were lyophilized, reconstituted in DMSO at 10 mg/ml, and diluted in RPMI 1640 (Invitrogen Life Technologies) as needed.
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Synthetic peptides were pooled (CEA subdominant pool) and used to stimulate the PBMC from the donors as described previously (19). Briefly, 20 x 106 PBMC were cultured for 7 days in RPMI 1640 (Invitrogen Life Technologies) supplemented with heat-inactivated human AB serum (10%; BioWhittaker), L-glutamine (2 mM), penicillin (100 U/ml), and streptomycin (50 mg/ml; BioWhittaker) (tissue culture medium) in the presence of the CEA subdominant pool (1 µg/ml of each peptide). The reactive lymphoblasts were isolated on a Percoll gradient (25), expanded in IL-2 (10 U/ml) containing medium (TCGF, Lymphocult; Biotest Diagnostic), and restimulated at weekly intervals with the same amount of peptides plus irradiated (4000 rad) autologous PBMC as APC. CD4+ T cell clones were obtained by limiting dilution from polyclonal lines as described elsewhere (26).
Flow cytometry
Cytofluorimetric analyses were performed on a FACStarPlus (BD Biosciences). We used the following mAbs: anti-CD4-PE and anti-CD8-FITC (BD Biosciences), anti-DR (D1.12 hybridoma; ATCC), and anti-HLA class I (W6/32 hybridoma; ATCC). FITC-conjugated rabbit anti-mouse Ig Ab (DakoCytomation) was used as second step reagent in indirect immunofluorescence stainings.
CD4+ T cell proliferation and stimulation assays
CD4+ T cells (1 x 104) were seeded in 96-well plates in the presence of CEA-expressing tumors (3 x 104), or irradiated autologous PBMC (1 x 105), or autologous or homozygous HLA-DR-matched LCL (0,5 x 105) as APC plus each single peptide forming the pool (10 µg/ml), or the purified CEA protein (520 µg/ml; BiosPacific) or normal human Ig (20 µg/ml, (Venimmun N; Aventis Behring), or the heat-inactivated cathepsin L protein (5 µg/ml; Calbiochem). In peptide titration experiments, the following concentrations of peptides were added: 105-10.50.10.05 and 0.001 µg/ml. Triplicate wells with CD4+ T cells alone and tumor cells or APC alone were used as controls. Three wells with CD4+ T cells plus APC did not receive any stimulus to determine the basal growth rate. In inhibition experiments, mAb D1.12 or an isotype-matched irrelevant mAb (W6/32; ATCC) was added at 2550 µg/ml. After 48 h, one-half of the medium was removed for cytokine secretion assays, and the cultures were pulsed for 16 h with [3H]TdR (1 µCi/well, 6.7 Ci/mol; Amersham). The cells were collected with a FilterMate Universal Harvester (Packard Instrument) in specific plates (Unifilter GF/C; Packard Instrument), and the thymidine incorporated was measured in a liquid scintillation counter (TopCount NXT; Packard Instrument). GM-CSF and IFN-
secretion was measured using standard ELISAs (BioSource Europe) according to the manufacturers instructions. In competition assays, increasing amounts of competitor peptides (1, 5, 10, and 50 µg/ml) were preincubated with the APC for 2 h and then CD4+ T cells were added in the presence of a suboptimal concentration (5 µg/ml) of the stimulating peptides.
Cytotoxicity assay
CD4+ T cells were tested for specific lytic activity in a standard 4-h 51Cr release assay as described previously (27). The following targets were used: Calu-1 cells, unpulsed and peptide-pulsed LCL. To allow the expression of MHC class II molecules, tumor cells were cultured for 48 h in the presence of IFN-
(1000 U/ml; R&D Systems).
Western blot analysis
Two million cells from tumor cell lines were washed twice with TBS and lysed directly in the culture flask by adding 1 ml of TRIzol reagent (Invitrogen Life Technologies), and 50100 mg of fresh lung tumor tissue were homogenized in 1 ml of TRIzol using a power homogenizer (PBI International). Proteins from the lysates were obtained after DNA precipitation in 95% ethanol. Samples were electrophoresed in 7% polyacrylamide gel and then transferred to nitrocellulose paper. Immunoblotting was performed as described by Towbin et al. (28). The blot was incubated with 5% nonfat dry milk in TBS buffer, then with 1/1000 dilution of anti-CEA IgG Ab conjugated to peroxidase (a generous gift from Dr. C. Rosa, Sorin, Saluggia, Italy) for 1 h and processed for ECL according to the suppliers instructions.
In vitro restimulation assay
CD4+ T cells were purified from total PBMC by positive magnetic selection (Miltenyi Biotec) and cultured in tissue culture medium with irradiated (4000 rad) CD4+-depleted PBMC as APC at a 1:3 ratio in 96-well plates in six replicates for each condition as described elsewhere (29). Stimuli were PHA (1 µg/ml), as a positive control, CD4+ T cells in the presence of the APC only, as baseline, and each single peptide (10 µg/ml). At day 7, IL-2 (25 U/ml) was added without further Ag stimulation. At day 14, 150 µl of supernatant was removed from each well for cytokines detection as described above. In the case of patient (Pt) 15, we repeated the experiment at 6 mo after surgery. Moreover, to verify whether peptide-specific CD4+ T cells recognize the native CEA protein, at day 14 CD4+ T cells stimulated with peptide CEA99111 were collected, washed, and rechallenged with the CEA protein or normal human IgG in the presence of autologous irradiated CD4+-depleted PBMC as APC. After 2 days of culture, GM-CSF release in the supernatant was detected, as described above.
| Results |
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We previously showed that the CEA sequence repeated at position 177186 and 355367 is predominantly recognized by CD4+ T cells from healthy donors and colon cancer patients, revealing a dominance over the other 10 selected peptides we used for in vitro priming (19). To identify subdominant CEA sequences able to form MHC class II epitopes, PBMC from two of the responsive healthy donors (donors 2 and 3 of Ref.19) were stimulated with a pool of CEA peptides (CEA subdominant pool) (Table I), in which the immunodominant sequence was not included to prevent the dominant expansion of CEA177186/355367-specific CD4+ T cells. After 7 days, the activated cells were expanded in the presence of IL-2-containing medium and propagated by weekly restimulation with irradiated peptide-pulsed autologous PBMC as APC. After two round of peptide stimulation, T cells were 98% CD4+ (data not shown). We determined the repertoire of peptides recognized by CD4+ T cells by testing their proliferation to each single peptide forming the CEA subdominant pool (Table I). CD4+ T cells from donor 2 significantly recognized CEA99111, CEA425437, and CEA568582, while CD4+ T cells from donor 3 significantly recognized CEA99111 and CEA666678. Several clones, specific for each peptide recognized, were then obtained by limiting dilution from polyclonal CD4+ T cell lines from both donors. CEA99111 and CEA425437 raised the largest number of clones. We demonstrated that peptide recognition by the clones was HLA-DR restricted by inhibition of CD4+ T cell proliferation to the peptides in the presence of an anti-HLA-DR mAb (Fig. 1A). To identify the HLA-DR-restricting alleles, peptide-specific CD4+ T cell clones were challenged with LCL, expressing each of the two HLA-DR
1 alleles of the donor (donor 2, *0301, *0701; donor 3, *0701, *1401), pulsed with the peptides, and 3H incorporation was tested. CEA99111 was recognized in association with DR*07 by donor 2 (clone 7) and DR*14 by donor 3 (clone 27); CEA425437 with DR*07 (clone 16) and CEA568582 with DR*03 (clone 33) by donor 2; CEA666678 with DR*14 by donor 3 (clone 1) (Fig. 1B). Peptide titration curves for all of the representative clones are also shown in Fig. 1C. The concentration of peptide requested to reach the half maximal stimulation for the several clones was comprised in a range concentration as follows: 0.673.3 µM (clone 47), 0.0670.33 µM (clone 27), 0.0670.33 µM (clone 16), 0.0630.31 µM (clone 33), and 0.00370.074 µM (clone 1).
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To verify whether the recognized CEA sequence contains naturally processed epitope(s), we tested the recognition by peptide-specific CD4+ T cell clones of the native CEA protein after processing and presentation by autologous APC (Fig. 2). The results of representative clones are reported. CD4+ T cell clones were challenged with the CEA protein or normal human IgG, as a negative control, and assayed for GM-CSF and/or IFN-
release. We chose as control protein normal human IgG both because of structural similarity with CEA and its proven immunogenicity (30). All clones, although to a different extent, significantly produced proinflammatory cytokines in the presence of the CEA protein but not of the normal human IgG, thus demonstrating that CEA99111, CEA425437, CEA568582, and CEA666678 contain naturally processed epitopes. In addition, to exclude that CEA protein recognition by peptide-specific CD4+ T cells was attributable to a contaminant Ag purified from the same tissue, clone 27 was also challenged with the cathepsin L protein purified from human liver, and no specific cytokine release was detected (data not shown).
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-producing DR*14-restricted CEA99111-specific clone 11 from donor 3 exerted specific killing activity against CEA99111-pulsed DR14-LCL and, most importantly, against the Calu-1 cells (Fig. 3D). The levels of expression of CEA as well as of surface MHC class II molecules, after 48 h of culture in the presence of IFN-
, by all tumor cells were verified by Western blotting and flow cytometry, respectively (data not shown).
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Since CEA, or CD66e, belongs to a family of highly homologous proteins that are expressed at high levels in normal neutrophils, we verified the sequence similarity of the CEA subdominant sequences among the different CD66 molecules. We found CEA99111 analogs on the CD66a, b, c, and d molecules (Fig. 4C) and CEA425437 analogs on the CD66a, b, and c molecules (Fig. 4F). We then tested the cross-reactivity of CEA99111- and CEA425437-specific CD4+ T cells for the analog peptides (Fig. 4).
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Concerning cross-reactivity of the DR*07-restricted clone 16 for CEA425437 analogs, we found no proliferation of the clone in the presence of the analogs, demonstrating that in this case the recognition of CEA425437 is CEA specific (Fig. 4D). In competition experiments, the response of clone 16 to CEA425437 was not affected in the presence of any of the analog peptides, which also appear to be poor binders (Fig. 4E).
Recognition of CEA epitopes by CD4+ T cells from lung cancer patients
PBMC from eight recently diagnosed lung cancer patients, whose characteristics are described in Table II, were obtained before surgery and in the case of Pt 15 also at the 6-mo follow-up. All patients tumors expressed CEA, as verified by Western blotting (data not shown), while none had soluble CEA above the normal range. CD4+ T cells were purified and cultured in six replicates in 96-well plates in the presence of irradiated autologous CD4+-depleted PBMC alone (APC), as baseline, or PHA, as positive control, or the peptides corresponding to the CEA sequences identified. At day 7 of culture, IL-2 was added without further Ag-specific stimulation, and at day 14 the supernatant was removed for the cytokine release assay. We previously reported (29) that this assay allows detection of in vivo-primed CD4+ T cells even when they are present in the blood at low frequency. As shown in Fig. 5, CD4+ T cells from Pt 4 (Fig. 5A) and 15 (Fig. 5B) secreted significant amounts of cytokines in the presence of CEA99111, and CD4+ T cells from Pt 4 also in the presence of the CEA177189/355367. In the same experimental conditions, CD4+ T cells from healthy donors 2 and 3, as well as from five additional normal subjects, did not produce cytokines in the presence of any CEA peptides (data not shown). IFN-
and GM-CSF secretion in the supernatant of PHA-stimulated CD4+ T cells was >2000 pg in all donors. In the case of Pt 15, we repeated the experiment at the 6-mo follow-up (Fig. 5C). Recognition of CEA99111 was confirmed; moreover, specific cytokine release became evident also in the presence of CEA177189/355367 (Fig. 5C, left panel). To verify whether recognition of peptide CEA99111 was CEA specific, at day 14 after supernatant removal, CD4+ T cells stimulated with the peptide CEA99111 were collected, washed, and rechallenged with the CEA protein or normal IgG and tested for cytokine release. As shown in Fig. 5C (right panel), CEA99111-specific CD4+ T cells secreted significant amounts of GM-CSF in the presence of the CEA protein, but not of normal IgG, thus demonstrating that indeed Pt 15 did contain CEA-specific CD4+ T cells in the blood.
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| Discussion |
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These results are the first demonstration of the potential for CD4+ T cells to recognize the CEA in vivo and suggest that tolerance toward CEA or cross-reactive CD66 homologous molecules might be either not absolute or be overcome in the neoplastic disease. Indeed, at difference with lung cancer patients, CD4+ T cells from the healthy donors did not recognize the CEA peptides in the in vitro restimulation assays, suggesting the existence of a repertoire in their blood of anti-CEA naive CD4+ T cells, which need to be primed in vitro. Recently, it has been reported (4) that human medullary thymic epithelial cells express CEA, suggesting that thymocytes expressing CEA-specific TCR would be subjected to central tolerance. Our results are not in contrast with these findings: although high-affinity CEA-specific CD4+ T cells may have been deleted, CD4+ T cells with intermediate to low-affinity TCR may have escaped deletion. Indeed, although we could not directly investigate this feature of the patients anti-CEA CD4+ T cells, the dose-response curves of the CD4+ T cell clones from the healthy donors (Fig. 1C) have shown for their TCR an intermediate affinity for the MHC class II-peptide complexes (mostly with EC50 in the range of 107 M). It should also be stressed that the level of soluble CEA in the patients was in the normal range (Table II), therefore reducing the possibility of peripheral tolerance induction. The patients tested suffered from early stages of neoplastic disease; therefore, it will be interesting to evaluate the anti-CEA CD4+ T cell response in a cohort of metastatic patients whose level of circulating CEA is increased above normal.
Another important issue raised by our results is the cross-reactivity for the analogs on the CD66 homologous molecules. We previously demonstrated (19) that recognition by CD4+ T cells of CEA177186/355367 is CEA specific. The same applies for recognition of CEA425437 in the present study (Fig. 4D). On the contrary, CEA99111-specific CD4+ T cells showed cross-reactivity with the analogs (Fig. 4A), suggesting that these potentially autoreactive CD4+ T cells could be responsible for autoimmune phenomena against the hemopoietic self.
The demonstration of the spontaneous CD4+ T cell response against this epitope in the blood of lung cancer patients has two important implications: first, that the potential tolerance induced by the homologous molecules expressed on hemopoietic cells seems not to affect the repertoire of CEA-specific CD4+ T cells and, second, that CEA99111-specific CD4+ T cells should not recognize naturally processed epitopes on the homologous CD66 molecules. Indeed, the two responding patients did not have alterations in the white blood cell count and formula. An anti-CEA response potent enough to induce antitumor therapy in the absence of autoimmunity was demonstrated in CEA-transgenic mice vaccinated with recombinant vaccinia virus-expressing CEA (31). Nonetheless, our data recommend that the possible induction of autoimmunity needs to be carefully and specifically addressed in therapeutic settings.
The strategy we used for in vitro priming with pools of peptides with different binding affinities to the MHC class II molecules should favor the expansion of CD4+ T cells specific for peptides with higher affinity. By this approach, we previously (19) identified an immunodominant CEA sequence recognized by normal donors and colon cancer patients in association with seven HLA-DR alleles. By stimulation of CD4+ T cells, in the absence of the immunodominant peptide, in this study, we identified four new epitopes; three of them (CEA425437, CEA568582, and CEA666678) are recognized by a single donor, while CEA99111 still represents a promiscuous epitope recognized in association with three to four alleles (DR*07 and DR*14 by the normal donors, and either DR*03, or DR*13, and either DR*07 or DR*11 by the two patients, respectively). From the algorithm data, the other subdominant CEA epitopes also were predicted as promiscuous MHC class II binders; therefore, their possible association with other DR alleles is worthwhile to be investigated.
CEA99111 was recognized by both patients; it will be interesting to increase the number of patients tested to evaluate whether subdominant vs immunodominant epitopes are more frequently recognized. Indeed, the priming conditions in vivo may differ from the in vitro, resulting in the stimulation of a larger repertoire of CEA-specific CD4+ T cells where immunization may develop at different times with the possible occurrence of epitope spreading (32).
We show that the newly identified CEA sequences contain naturally processed epitopes. This is proved by the specific production of proinflammatory cytokines by peptide-specific CD4+ T cells in the presence of APC after processing and presentation of purified CEA and of CEA-expressing tumor cells: CEA99111-specific CD4+ T cells also exerted killing activity. Definitive demonstration that this epitope is formed in vivo is its recognition by CD4+ T cells from the patients.
In conclusion, we have identified four new CEA subdominant sequences, one of which is recognized in association with several HLA-DR alleles, and found spontaneous anti-CEA CD4+ T cell responses in lung cancer patients. The identification of these new sequences will be highly instrumental for future studies covering a larger cohort of patients at different stages of neoplastic disease, addressing the relationship between the presence and quality of CEA-specific CD4+ T cell responses and disease progression in cancer patients.
| Acknowledgments |
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| Disclosures |
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| Footnotes |
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1 This work was supported by: the Cancer Research Institute (clinical investigation grant), the Italian Association for Cancer Research, the European Community (Dendritic Cells for Novel Immunotherapies, Contract LSHB-CT-2004-512074), the Compagnia di San Paolo, the Fondazione Berlucchi, and the Italian Ministry of Health. ![]()
2 Address correspondence and reprint requests to Dr. Maria Pia Protti, Cancer Immunotherapy and Gene Therapy Program, DIBIT, Scientific Institute H. San Raffaele, Via Olgettina 58, 20132 Milan, Italy. E-mail address: m.protti{at}hsr.it ![]()
3 Abbreviations used in this paper: CEA, carcinoembryonic Ag; LCL, lymphoblastoid cell line; Pt, patient. ![]()
Received for publication November 2, 2005. Accepted for publication February 2, 2006.
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with
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