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Departments of
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Molecular Immunology, and
Oncology and Molecular Medicine, and
Animal Research Facility, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Japan;
Department of Immunology, Tokai University School of Medicine, Isehara, Japan; and
¶ Center for Experimental Medicine, Institute of Medical Science, University of Tokyo, Tokyo, Japan
| Abstract |
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| Introduction |
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Recent advances in our understanding of gene regulation in thymocyte differentiation have involved the roles of the Runx family of transcription factors (6). Expression of Runx1 protein is detected in immature, CD48 double-negative (DN) and premature DP thymocytes, as well as in mature SP thymocytes (8, 9, 10, 11). As expected from this expression pattern, Runx1 appears to exert its function at each step of thymocyte differentiation. For example, both the transition of DN cells to the DP stage and the maturation of postselected SP cells are significantly perturbed if the endogenous Runx1 activity in thymus is reduced by artificially expressing a dominant interfering form of Runx1 (8, 11). Each of these steps is normally accompanied by a tremendous amount of cell proliferation, for which Runx1 function is necessary. Conditional targeting of Runx1 has also revealed that it has an indispensable role in the initial emergence of T-committed cells from stem cells (12).
In contrast to Runx1, the expression of Runx3 protein is detected mainly in the CD48+ subset of thymocytes and splenocytes (9, 10). In accordance with this protein expression profile, CD48+ thymocytes do not develop in the Runx3 (/) thymus (13, 14). Based on an analysis of CD4 gene regulation, Taniuchi et al. (13) proposed that Runx3 binds to the Runx elements in the CD4 silencer and represses CD4 expression. Use of a Morpholino antisense oligonucleotide in an in vitro thymocyte differentiation system also supported the requirement for Runx3 in the generation of CD48+ cells (10).
These studies clearly implicate Runx3 in the regulation of CD4 expression, but do not necessarily prove its role in the differentiation of CD48+ thymocytes per se. Loss-of-function experiments provide information about what Runx3 does but not about everything it can do. In the present study, we overexpressed a transgenic Runx3 specifically in the T lineage and analyzed the development of the transgenic thymocytes. Runx3 can actively drive thymocytes to the CD48+ lineage, which implies that it does more than simply silencing CD4 gene expression.
| Materials and Methods |
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The hemagglutinin (HA) tag that represents the epitope of flu virus HA was fused to the N terminus of the murine Runx3 coding region by the PCR method as follows. PCR was performed using a murine Runx3 cDNA (15) as a template. The sequences of the sense and antisense primers were 5'-GCC GGA TCC GAA TTC ACC ATG TAT CCA TAT GAT GTT CCA GAT TAT GCT ATG CGT ATT CCC GTA GAC CC-3' and 5'-GCC GGA TCC GAA TTC TTA GTA GGG CCG CCA CAC-3', respectively. The PCR product was digested with BamHI and subcloned into the BamHI site of pLck (p1017), which harbors the proximal promoter region of the murine Lck gene and a poly(A) addition sequence derived from the human growth hormone gene (16). The resulting plasmid was designated pLck-HA/Runx3. The accuracy of the modified sequences in the plasmid was confirmed by sequencing. Immunohistochemical staining of cDNA-transfected HeLa cells confirmed the nuclear localization of HA-tagged Runx3 protein (data not shown).
Mice
To generate transgenic mouse lines expressing Runx3, the DNA of pLck-HA/Runx3 was digested with SpeI, and the purified fragment containing the Runx3 expression unit was microinjected into fertilized eggs of C57BL/6 mice. Transgenic founders were identified and crossed to C57BL/6 mice. The presence or absence of the transgene was examined by PCR using genomic DNA as a template. The sense and antisense primers were 5'-CGG GAA TTC ATG TAT CCA TAT GAT GTT CCA GAT TAT GCT ATG CGT ATT CCC GTA GAC CC-3' and 5'-CCG GAA TTC TTA GTA GGG CCG CCA CAC-3', respectively, and a 1275-bp fragment was amplified from the transgene. Establishment of the human CD4-transgenic mice will be described elsewhere (Y. Iwakura, manuscript in preparation). Briefly, fertilized eggs of C3H/HeN mice were microinjected by the human CD4 cDNA which harbors the murine CD4 enhancer/promoter and an SV40-derived poly(A) addition signal.
2-microglobulin (
2m)-deficient mice and CD4-deficient mice were purchased from The Jackson Laboratory. The I-Ad-restricted, OVA323339-specific TCR-transgenic mice have been previously reported (17).
Flow cytometrical analysis
Cells were liberated from the thymus and spleen and suspended in PBS containing 0.2% (w/v) BSA. The single-cell suspensions were incubated with appropriately diluted mAbs on ice for 3060 min. The following fluorescein-conjugated mAbs were used: CyChrom-CD4 (Rm4-5), FITC-CD4 (Rm4-5), PE-CD8a (53-6.7), RED613-CD8a (53-6.7; Invitrogen Life Technologies), PE-TCR
(H57-597), FITC-CD69 (H1.2F3), FITC-V
2 (B20.6), FITC-V
3 (KJ25), FITC-V
4 (KT4), FITC-V
5.1 and -5.2, FITC-V
6 (RR4-7), FITC-V
7 (TR310), FITC-V
8.1 and -8.2 (MR5-2), FITC-V
8.3 (1B3.3), FITC-V
9 (MR10-2), FITC-V
10b (B21.5), FITC-V
11 (RR3-15), FITC-V
12 (MR11-1), FITC-V
13 (MR12-3), FITC-V
14 (14-2), FITC-V
17a (KJ23), FITC-HSA (M1-69), and FITC-human CD4 (Leu3a). Except for RED613-CD8a, the mAbs were purchased from BD Pharmingen. The labeled cells were separated with an analytical flow cytometer (EPICS-XL), and the data were analyzed with EXPO32 software (Beckman Coulter).
Immunoblot analysis and EMSA
The CD48+HSAlow and CD4+8HSAlow fractions were purified from thymocytes or splenocytes, respectively, using autoMACS (Miltenyi Biotec). Its purity was judged to be >90% by flow cytometry. Protein was extracted from cells using a radioimmunoprecipitation assay solution (50 mM Tris-HCl (pH 7.4), 1% (v/v) Triton X-100, 0.5% (w/v) sodium deoxycholate, 0.1% (w/v) SDS, 150 mM NaCl, 1 µg/ml aprotinin, 1 mM NaVO4, and 1 mM NaF). The other procedures necessary for immunoblot analysis including the electrophoresis, transfer to the filter, and immunoreaction were performed as described previously (18). The raising and characterization of the anti-Runx peptide Ab was also described previously (19). The antiserum raised against the C terminus of murine Runx1 can recognize Runx1, Runx2, and Runx3, because they share the common VWRPY sequence at their extreme C-terminal ends. The anti-tubulin
Ab (Ab-1) was purchased from Oncogene. The procedures for preparing nuclear extracts and for the EMSA were described previously (20). The Runx binding sequence from the Polyomavirus enhancer was used as a probe to detect Runx DNA binding activity. The anti-HA mAb 3F10 used for the supershift assay was purchased from Roche Diagnostics.
RT-PCR
Total cytoplasmic RNA was isolated from cells using the ISOGEN reagent (Nippon Gene). cDNAs were synthesized from the RNAs by reverse transcription using Superscript II reverse transcriptase (Invitrogen Life Technologies). The cDNAs were PCR-amplified (25 cycles for each gene) with LA-Taq polymerase (Takara), using the following sense and antisense primers to detect transcripts: for CD4, 5'-CCT GCG AGA GTT CCC AGA AGA AGA TCA CAG-3' and 5'-TGA TAG CTC TGC TCT GAA AAC CCA GCA CTG-3'; for CD8
, 5'-GGT GAG TCG ATT ATC CTG GGG AGT GGA GAA-3' and 5'-ACA CAA TTT TCT CTG AAG GTC TGG GCT TGC-3'; for perforin1, 5'-CAA GCA GAA GCA CAA GTT CGT-3' and 5'-CGT GAT AAA GTG CGT GCC ATA-3'; for GATA3, 5'-AGG CAA GAT GAG AAA GAG TGC CTC-3' and 5'-CTC GAC TTA CAT CCG AAC CCG GTA-3'; and for G3PDH, 5'-ACC ACA GTC CAT GCC ATC AC-3' and 5'-TCC ACC ACC CTG TTG CTG TA-3'. The PCR products were run through agarose gels and visualized with ethidium bromide staining.
Chromatin immunoprecipitation assay
A chromatin fraction was prepared from thymocytes, fixed and immunoprecipitated by the anti-Runx or anti-HA Ab, respectively. The procedures were as recommended by the manufacturer of the assay kit (Upstate Cell Signaling Solutions). DNA was purified from the precipitate and processed as a template for PCR to amplify the CD4 silencer-specific sequence. The primers for PCR were 5'-TGT AGG CAC CCG AGG CAA AG-3' and 5'-GTT CCA GCA CAG GAG CCC CA-3'. The amplified product was run through agarose gels and transferred to nylon membranes. The membranes were hybridized with 32P-labeled, CD4 silencer-specific oligonucleotide, 5'-ATA CGA AGC TAG GCA ACA GA-3'.
| Results |
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Endogenous expression of Runx3 protein is detected mainly in the CD48+ subset of T lymphocytes (9, 10). To artificially overexpress Runx3 in the T cell lineage, we placed the Runx3 coding region under the control of the proximal Lck gene promoter. This promoter is known to be active in immature as well as mature T cells and in thymic as well as peripheral T cells (16). Transgenic mouse lines were established and the expression of Runx3 protein was examined by immunoblot analysis using an anti-Runx Ab (Fig. 1A). The 52-kDa Runx3 band was clearly detected in the extract of both CD4+8 and CD48+ fractions, which were prepared from transgenic thymi as well as spleens. The endogenous Runx3 was also detected in the wild-type, CD48+ thymocytes and splenocytes but to a much lesser degree compared with the transgenic cells. Thus, the magnitude of Runx3 overexpression in the transgenic vs wild-type cells was roughly 5-fold in the case of thymi and 3-fold in the case of spleens. A very faint band seen in the CD4+8 wild-type cells represents the nonspecific reaction of the Ab, because the band was not abolished by the preabsorption of the Ab with the Ag peptide. The endogenous Runx1 protein of 56 kDa was detected in all the fractions tested.
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The percentage of CD48+ cells increases and the percentage of CD4+8+ and CD4+8 cells simultaneously decreases in the Runx3-transgenic thymus
After confirming the protein expression of transgenic Runx3, we evaluated its effect on T cell differentiation. Flow cytometry was used to analyze CD4 and CD8 in thymocytes and splenocytes (Fig. 2). In the Runx3-transgenic thymi, the percentage of CD48+ cells increased to 80% of the total population, whereas the percentage of CD4+8+ cells decreased to only 9%; the percentage of CD4+8 cells also decreased substantially. The unusual profile of CD4 and CD8 expression in the transgenic thymocytes was reflected in the transgenic splenocytes as well. In the transgenic spleen, the percentage of CD48+ cells was higher than that of CD4+8 cells, whereas the opposite was true in the wild-type spleen.
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60% of that of wild-type thymocytes. As a result, the number of cells in the CD48+ fraction was higher, and the number in the CD4+8+ and CD4+8 fractions was lower, in the transgenic thymi compared with the wild-type thymi. The total number of splenocytes did not differ significantly between the two genotypes.
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The increase in the CD48+ fraction in the Runx3-transgenic thymus could be due either to an increase in CD8 expression or a decrease in CD4 expression. To distinguish these two possibilities, the CD8 and CD4 expression profiles were displayed for the wild-type and the Runx3-transgenic thymocytes (Fig. 3A). The relative ratios of CD8 and CD8+ cells were not different between the two genotypes. In contrast, the number of CD4 cells was greatly increased and the number of CD4+ cells was decreased in the transgenic thymus compared with the wild-type thymus.
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The CD4 silencer is proposed to be a main target by a Runx3 transcription factor (13, 14). We checked this by chromatin immunoprecipitation analysis (Fig. 3C). An increasing amount of chromatin fraction-derived DNA that was precipitated by the anti-Runx or anti-HA Ab was processed for PCR and hybridized by a CD4 silencer-specific oligonucleotide. Both Abs precipitated a significantly greater amount of CD4 silencer sequence from the Runx3-transgenic thymocytes compared with the wild-type cells. The results in Fig. 3 thus suggest that the phenotypic alteration seen in the transgenic thymocytes in Fig. 2 can be at least partly explained by the down-regulation of CD4 expression.
The increased CD48+ fraction of transgenic thymocytes includes immature, premature, and mature subpopulations
We next characterized in detail the CD48+ fraction of transgenic thymocytes. As described below, this fraction was found to contain three different subpopulations: immature, premature, and mature cells.
The first subpopulation in the CD48+ fraction was recognized as immature single-positive (ISP) cells, which can be easily seen by following the ontogeny of thymocyte development (Fig. 4A). In wild-type thymus, only CD48 cells were detected at embryonic day (E)15.5. CD48+ ISP cells transiently appeared at E16.5, CD4+8+ cells at E17.5, and CD4+8 cells at day 2 after birth. In the Runx3-transgenic thymus, immature CD48+ cells first appeared at E16.5 and remained as the main population until after birth. The persistence of ISP cells is probably due to the down-regulation of CD4 by Runx3. This CD4 repression appeared to be partial, because some CD4+8+ and CD4+8 cells emerged at day 2 after birth in transgenic mice.
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(hereafter TCR) and heat-stable Ag (HSA) were displayed for this fraction (Fig. 4B). The immature TCRlowHSAhigh fraction made up 27% of the wild-type and 57% of the transgenic CD48+ thymocytes. Therefore, overexpression of Runx3 increased the number of ISP cells. Another characteristic of the transgenic CD48+ fraction was the presence of an aberrant TCRmedHSAhigh subpopulation that was not as apparent in the wild-type fraction (33 vs 4%; Fig. 4B). The medium degree of TCR expression indicates that this second subpopulation should be categorized as representing the premature DP stage rather than the ISP stage. We further confirmed this point by staining the thymocytes with CD69, a marker of positive selection (Fig. 4C). In the case of wild-type cells, the TCRmedCD69+ cells exhibited a CD4+8+ phenotype, whereas the TCRhighCD69+ exhibited both the CD4+8 and CD48+ phenotypes. The TCRmedCD69+ population could also be detected in the transgenic thymus, but the apparent phenotype of this population was CD48+, not CD4+8+. The CD48+ fraction persisting in the developing transgenic thymus (Fig. 4A) may contain these TCRmed cells as well. Thus, the second subpopulation can be summarized as the premature, "CD4-repressed DP" cells.
The transgenic CD48+ fraction also contained a third subpopulation of mature, TCRhighHSAlow cells (see 10% in Fig. 4B). We next evaluated the effect of Runx3 overexpression on these mature CD48+ cells. To do so, we first obtained a TCR expression profile for the total thymocyte population (Fig. 5A). Both the wild-type and Runx3-transgenic thymi contained TCRlow, TCRmed, and TCRhigh subpopulations to a comparable degree. Because the TCRhigh subpopulation corresponds to mature cells, overexpression of Runx3 did not appear to arrest or block thymocyte differentiation. We gated the TCRhigh subpopulation and then displayed the CD4/8 profile (Fig. 5B). In the TCRhigh thymocytes from the wild-type, the percentage of CD48+ cells was one-third that of CD4+8 cells, whereas in the transgenic TCRhigh thymocytes, the percentage of CD48+ cells was three times that of CD4+8 cells. We also counted the cell numbers constituting each fraction and found that the absolute number of CD48+TCRhigh cells in the transgenic thymi was approximately twice that in the wild-type thymi.
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The mature CD48+ cells are released into periphery of Runx3-transgenic mice
Promotion of thymocyte differentiation toward the CD8 lineage by Runx3 was also reflected in the cell composition in the spleen (Fig. 6, A and B). Among the TCRhighHSAlow mature T cells, the ratio of CD48+ cells to CD4+8 cells was 0.5 in the spleens from the wild type, but was 1.4 in the transgenic splenocytes.
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regions by the TCRhighCD8+ splenocytes using flow cytometry (Fig. 6C). The pattern of the V
repertoire was essentially similar between the transgenic and wild-type cells. Therefore, in the Runx3-transgenic mice, apparently normal, multiclonal, mature CD8+ cells were generated in the thymus and released into periphery as in the wild-type mice. Overexpression of Runx3 can drive originally CD4-oriented thymocytes toward the CD8 lineage
The results shown in Figs. 5 and 6 indicate that the overexpressed Runx3 can drive thymocytes to select and mature along the CD8 lineage. We then examined whether this effect of Runx3 is dependent on the TCR signaling elicited from proper MHC interactions. The TCR transgene, which is restricted to MHC class II, was introduced into Runx3 transgenic mice (Fig. 7A). Thymi from TCR single-transgenic mice showed a skew of cell differentiation to the CD4 lineage (33% CD4+8 compared with 3.6% CD48+). In contrast, in the TCR and Runx3 double-transgenic thymi, the CD48+ cells constituted the major population (73%), just as in the case of Runx3-single-transgenic thymi. When only the mature cells were selected by gating the HSAlow fraction (and by gating the transgene-specific TCRhigh fraction as well (data not shown)), it was clear that the Runx3 transgene switched the differentiation of class II-restricted cells to the CD8 lineage.
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2m (/), class I-deficient thymus provides an environment unfavorable for the selection of CD48+ cells (Fig. 7B). In the TCRhigh fraction, 90% of wild-type thymocytes were CD4+8 cells. In contrast, the Runx3 transgene appeared to shift the differentiation of thymocytes toward the CD8 lineage even in the context of class I deficiency. Thus, overexpressed Runx3 can push a cell toward the CD8 lineage independently of the MHC-elicited TCR signaling. Overexpression of Runx3 can drive thymocytes toward the CD8 lineage irrespective of the CD4 signaling
In thymocyte differentiation, the TCR signaling exerts its effect in concert with the signaling elicited from either the CD4 or CD8 molecule. We examined the activity of overexpressed Runx3 on thymocyte differentiation under the condition of either excess or deficiency of CD4 signaling. First, the Runx3-transgene was introduced into human CD4-transgenic mice (Fig. 8A). As seen, the level of human CD4 expression was not so high and therefore might be limited to compensate the endogenous, murine CD4, which should be silenced by the overexpressed Runx3. Under this limitation, a majority of mature TCRhigh cells possessed a CD48+ phenotype in Runx3-transgenic thymi. Second, the Runx3-transgene was expressed in a CD4-deficient background (Fig. 8B). When a CD48+ fraction was displayed for its TCR expression, the mature TCRhigh cells corresponded to 27% of CD4-deficient and Runx3-transgenic thymocytes. In contrast, such mature cells occupied only 17% of simple CD4-deficient thymocytes. Collectively, neither an excess nor a lack of CD4 signaling appears to influence the extent of overproduction of mature CD48+ thymocytes, which is caused by the overexpressed Runx3. Thus, the activity of Runx3 to drive thymocytes toward the CD8 lineage is likely to be due to more than a simple silencing of CD4 gene expression.
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| Discussion |
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In the present study, we created Runx3-transgenic mice and found that the number of mature CD48+ thymocytes was increased. This result is opposite to that found in the Runx3 (/) thymus, in which the number of mature CD48+ cells is markedly decreased (13, 14). Therefore, the present gain-of-function analysis complements the previous loss-of-function analysis. However, a close inspection of our results reveals a new aspect of Runx3 function as described below and as summarized in Fig. 9.
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2m (/) mice. Taken together, Runx3 likely possesses the capacity not only to suppress CD4 gene expression but also to actively drive the thymocytes toward the CD8 lineage. In the wild-type thymus, the endogenous Runx3 is likely involved in the selection of and commitment to the CD8 lineage in concert with TCR signaling. A short and/or weak TCR signal is somehow transduced to Runx3, which in turn regulates the gene expression necessary for the CD8 lineage determination. CD4 silencing is one target of Runx3 (13) and maintenance of CD8 expression is probably a target as well. Another possibility is that Runx3 is involved in the survival and/or maturation of thymocytes after they have selected the CD8 lineage.
At the DN stage, the CD4 silencer is reported to be "ON." Transcription of the CD4 gene is initiated when the DN cells move to the DP stage, and the activity of the CD4 silencer is expected to be turned "OFF" during the transition from DN to DP (26). The mechanism of this "OFF" switch cannot be assessed by targeted deletions of Runx3 or CD4 silencer. In our Runx3-transgenic thymus, the percentage and number of CD4+8+ cells were remarkably reduced, and an aberrant population of "CD4-repressed DP" cells with a CD48+TCRmedHSAhigh phenotype emerged instead. It is likely that exogenous expression of the transgene-derived Runx3 protein maintained the CD4 silencer in the "ON" position, thereby giving rise to the "CD4-repressed DP" thymocytes from the immature CD48+TCRlow cells. However, these premature cells do acquire a CD48+ phenotype, probably due to the strong repression of CD4 expression.
We previously reported the phenotype of Runx1-transgenic mice in which the numbers of both immature ISP and mature CD8 SP cells were increased (9). Even taking into consideration the differences between the Runx3- and Runx1-transgenic thymocytes in terms of the promoters used and/or the magnitude of transduced protein expression, it is interesting to note that overexpression of Runx1 did not generate the "CD4-repressed DP" cells as Runx3 did. Furthermore, the endogenous Runx1 protein is easily detected in the DP cells of wild-type thymus (10, 11), and Runx1 and Runx3 do not associate with each other in a coimmunoprecipitation experiment (K. Kohu and M. Satake, unpublished data). These observations suggest both that Runx1 is not involved in the turning the CD4 silencer "OFF" at the DP stage and that the overexpressed Runx3 can reactivate the CD4 silencer at this DP stage. It must be noted, though, that the enforced expression of Runx1 in a fetal thymic organ culture could generate similar "CD4-repressed DP" cells (27). The mechanism by which the CD4 silencer is turned "OFF" at the DN-to-DP transition needs further investigation.
The Runx3-transgenic thymus clearly contained mature CD4+8 cells, and we confirmed that the transduced Runx3 was indeed expressed in these cells. Perhaps in thymocytes that are committed to the CD4+8 lineage, the chromatin structure at the CD4 silencer region may be in a "closed" state, denying Runx3 access to the site.
Several transcription factors have been reported to be involved in the lineage selection of CD4/8 thymocytes. GATA3 is a positive regulator that boosts thymocytes toward the CD4 lineage (28, 29, 30), whereas TOX (31, 32) and/or activated Notch1 (33) move thymocytes toward the CD8 lineage. These factors are thought to function in response to an adequate signal from TCR when expressed endogenously, but transgenic overexpression might reveal cell-autonomous aspects of their functions. Thus, the possible interplay between the TCR signal, TOX, and Runx3 in the CD8 lineage selection will be a fascinating subject to pursue.
| Disclosures |
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| Acknowledgments |
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| Footnotes |
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1 This work was supported in part by research grants from the Ministry of Education, Science, Sports, Culture and Technology, Japan. M.S. is a member in the 21st century Center of Education program, "Center for Innovative Therapeutic Development Towards the Conquest of Signal Transduction Diseases," which is headed by K. Sugamura at Tohoku University. ![]()
2 Address correspondence and reprint requests to Dr. Masanobu Satake, Department of Molecular Immunology, Institute of Development, Aging and Cancer, Tohoku University, 4-1 Seiryo-machi, Aoba-ku, Sendai 980-8575, Japan. E-mail address: satake{at}idac.tohoku.ac.jp ![]()
3 Abbreviations used in this paper: DP, double positive; SP, single positive; DN, double negative; HA, hemagglutinin;
2m,
2-microglobulin; ISP, immature single positive; E, embryonic day; HSA, heat-stable Ag. ![]()
Received for publication April 15, 2004. Accepted for publication November 12, 2004.
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