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Center for Immunology, University of Texas Southwestern Medical Center, Dallas, TX 75390
| Abstract |
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| Introduction |
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B6.Sle1 mice develop hypergammaglobulinemia, splenomegaly, and expanded populations of activated CD4 T cells and B cells in their spleens, leading to a progressive loss in immune tolerance and the production of high-titered IgG antinuclear Abs beginning at
4 mo of age (5). Our ongoing genetic analyses of this interval indicate that a cluster of four loci, denoted Sle1a through Sle1d, mediate these Sle1 phenotypes (6). Detailed analyses of truncated congenic intervals containing the individual genes in the Sle1 cluster have identified Sle1a and Sle1b as the most potent loci, each capable of mediating fatal lupus when combined with additional autoimmune genes, such as lpr or yaa. These studies have demonstrated that Sle1ab is expressed in a cell intrinsic fashion in lymphocytes and that they cause progressive functional changes in both T and B lymphocytes, leading to chronic immune activation and autoantibody production.
Phenotypic analyses have indicated that B lymphocytes are strongly dysregulated by Sle1ab (6, 7). Although previous analyses have identified a variety of cell surface phenotypic changes, little is currently known about transcriptional changes in B lymphocytes from B6.Sle1ab. In this study, we describe a global gene expression analysis of B lymphocytes from B6.Sle1ab mice as they transition to an ANA-positive phenotype. Our results implicate IL-6 as a key early cytokine in disease development and identify several molecular pathways as candidates for therapeutic intervention.
| Materials and Methods |
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C57BL/6 (B6) mice were obtained from The Jackson Laboratory and subsequently bred in the University of Texas Southwestern Medical Center specific pathogen-free animal colony. B6.Sle1ab mice are B6 mice congenic for a 3-cM interval of NZM2410 origin on chromosome 1, with termini at D1Mit400 and D1Mit206 (6). The derivation of B6-congenic mice bearing NZM2410-lupus susceptibility intervals has been detailed previously (3, 6). The immunological phenotypes of this strain have been reported previously (3, 5, 6). All experiments were conducted with the approval of the Institutional Animal Care and Use Committee of the University of Texas Southwestern Medical Center.
Cell isolation and RNA extraction
B lymphocytes were isolated from mouse spleens by using DynaBeads coated with anti-B220 mAb according to the manufacturers instruction (Dynal). Briefly, splenocytes were depleted of RBC by incubation with ACK lysing buffer (containing 0.15 M NH4Cl, 10 mM KHCO3, and 0.1 mM EDTA, pH 7.4) for 5 min. After three washes at 4°C, the cells were incubated at 4°C for 20 min with Dynabeads Mouse pan B (B220) at a target:bead ratio of 1:4 in PBS containing 1% FCS. The rosetted cells were then washed three times. The purity of the isolated B lymphocytes was >97%. Total cellular RNA was prepared using an Atlas Total RNA Isolation kit (BD Clontech) per the manufacturers instruction.
cDNA microarray hybridization and analysis
For Atlas Arrays, the complex [
-32P]dATP-labeled first-strand cDNA probes were synthesized and purified according to the protocol provided in the Atlas Mouse 1.2 Array Users Manual (BD Clontech). Ten micrograms of total RNA was used as template in a 10-µl reverse transcription reaction. A gene-specific primer mixture (BD Clontech) was used to prime the reverse transcription. The Atlas Mouse 1.2 cDNA array membranes were prehybridized in ExpressHyb (BD Clontech) containing 100 mg/5 ml of sheared salmon testes DNA at 71°C for 30 min. Then these membranes were hybridized with 32P-labeled first-strand cDNA probes (10 x 106 cpm) overnight at 71°C. After washing, the arrays were exposed to a phosphorimaging screen for 24 h at room temperature. The screen was scanned on a PhosphorImager (Molecular Dynamics) and the images were analyzed by using AtlasImage software (BD Clontech). The scatter plots were generated using GeneSpring Software (Silicon Genetics). Mouse 12k glass arrays containing 12,000 cDNAs were constructed in the University of Texas Southwestern Medical Center Microarray Core Facility (see http://microarraycore.swmed.edu for gene list). Each array contains
5,600 sequence-verified cDNA clones from Research Genetics, Inc., and
6,200 IMAGE Consortium mouse cDNA clones (1,536 clones from B cell line, 1,920 clones from T cell line, 768 clones from thymus, 768 clones from macrophage cell line, and 1152 clones from spleen) from Incyte Genomics. Generation of cDNA probes and array hybridization were performed with a Submicro Expression kit (Genisphere) (8) according to the manufacturers protocol. Briefly, 1 µg of total RNA was reverse-transcribed using reverse transcription primers tagged with either Cy3- or Cy5-specific 3DNA capture sequence. The synthesized tagged cDNAs were then labeled by Cy33DNA or Cy53DNA based on the complementary of capture sequence with 3DNA capture reagents. The hybridizations were performed at 50°C, with three subsequent washes of the slides in 2x SSC, 0.2% SDS, 2x SSC, and 0.2x SSC buffers. The arrays were scanned using the GenePix 4000A scanner (Axon Instruments). The results were analyzed using GenePix 4.0 (Axon Instruments) and GeneSpring (Silicon Genetics).
Relative quantitative RT-PCR
Relative quantitative RT-PCR was performed using reverse transcription and coamplification of 18S ribosomal RNA as internal control following the protocol provided with a QuantumRNA 18S internal standard kit (Ambion) according to the manufacturers instructions. Briefly, 0.5 µg of RNA was mixed with 2 µl of random primers (50 µM; Ambion) and RNase-free water up to 10 µl of volume, denatured at 80°C for 10 min, and rapidly cooled on ice for 5 min. Then 1 µl of dNTP mix (10 mM), 0.5 µl of RNasin RNase inhibitor (Roche Applied Science), 1 µl of 0.1 M DTT, 4 µl of 5x first-strand buffer (Invitrogen Life Technologies), and 1 µl of Moloney murine leukemia virus-reverse transcriptase (Invitrogen Life Technologies) were added to each sample. The mixtures were incubated for 1 h at 42°C. PCR was performed using 1 µl of the reverse transcription product in a 50-µl reaction mixture containing 5 µl of 10x PCR buffer (Roche Applied Science), 1 µl of dNTPs (10 mM), 2 µl of gene-specific primer pair (10 µM each), 4 µl of 18 S Classic Primer and Competimer pair (Ambion), and 2.5 U of TaqDNA polymerase (Roche Applied Science). After incubation at 94°C for 5 min, the PCR was performed for 29 cycles followed by a 5-min extension at 72°C. Each cycle consisted of 94°C for 30 s, 60°C for 30 s, and 72°C for 45 s. Both suppressor of cytokine signaling (SOCS) 3 mRNA and 18S rRNA coamplified within a linear range. Because of the low abundance of IL-6 mRNA in spleen, RT-PCR of IL-6 mRNA was performed on equal amounts of RNA without using 18S RNA internal control. The PCR cycle number for IL-6 is 35. Amplified PCR products were visualized by ethidium bromide staining and relatively quantified by EagleEye software (Stratagene). The nucleotide sequences of the primers for SOCS3 are 5'-GGA GAC TCC TGA GTT AAC ACT GGG-3' (sense) and 5'-GAC CAG TTC CAG GTA ATT GCA TGG C-3' (antisense). The nucleotide sequences of the primers for IL-6 are 5'-ATA GTC AAT TCC AGA AAC CGC TAT GAA G-3' (sense) and 5'-GAT TAT ATC CAG TTT GGT AGC ATC CAT C-3' (antisense).
SDS-PAGE and immunoblotting
Isolated B lymphocytes were lysed in a buffer containing 300 mM NaCl, 50 mM Tris-Cl (pH 7.6), 0.5% Triton X-100, 10 µg/ml leupeptin, 10 µg/ml aprotinin, 1 mM PMSF, 1 mM sodium orthovanadate, 1 mM sodium molybdate, and 1 mM NaF. Cellular extracts were incubated on ice for 30 min and then centrifuged at 12,000 x g for 20 min. The supernatants were collected, and the protein concentration was determined using a Bio-Rad protein assay kit. Equivalent amounts of total cellular protein extract (4 µg) were fractionated on 10% SDS-PAGE and electrotransferred to a polyvinylidene difluoride membrane using a Bio-Rad transblot apparatus. The membrane was blocked overnight with TBST buffer (10 mM Tris-Cl (pH 8.0), 0.9% NaCl, and 0.1% Tween 20) plus 4% BSA (for phosphorylated proteins) or 5% nonfat dry milk and incubated for 1 h with primary mAb in TBST buffer plus 4% BSA (for phosphorylated proteins) or 5% nonfat dry milk. Following three washes in TBST, the membranes were incubated with a secondary Ab for 1 h. The blots were again washed three times in TBST and then developed using an ECL Plus kit (Amersham) according to the manufacturers instructions. Protein bands were quantified by densitometric analysis using a computerized densitometer (Molecular Dynamics) and ImageQuant software (Molecular Dynamics). Rabbit polyclonal Abs specific for P44/42 MAP kinase, STAT3, or phospho-STAT3 were purchased from Cell Signaling. Rabbit anti-phospho-ERK1/2 MAP kinase polyclonal Abs were purchased from Promega. Rabbit anti-SOCS3 polyclonal Abs and the secondary Abs (goat anti-rabbit IgG) were purchased from Santa Cruz Biotechnology.
ELISA
Sera collected from the mice studied were assayed for the presence of anti-histone-DNA Abs by ELISA as previously described (4, 5, 9). Comparisons of Ab levels between different strains and genders in sera were conducted by testing simultaneously all of the samples from different mice on the same ELISA plate. Briefly, Immulon II plates (Dynatech Laboratories), precoated with methylated BSA, were coated overnight with 50 µg/ml dsDNA (Sigma-Aldrich) and 10 µg/ml total histones (Roche Applied Science) at 4°C. The concentrations of Ags used in these ELISAs have been shown to saturate all available binding sites (4, 9). After blocking with PBS/3% BSA/0.1% gelatin/3 mM EDTA, 1/100 dilutions of the test sera were incubated in duplicate for 2 h at room temperature. Bound IgG was detected with alkaline phosphatase-conjugated anti-mouse IgG (Jackson ImmunoResearch Laboratories) using pNPP as a substrate. Raw OD was converted to units per milliliter using a positive control serum from an NZM2410 mouse. The reactivity of a 1/100 dilution of this serum was arbitrarily set to 100 U/ml. For quantitation of serum IL-6, a Quantikine M IL-6 kit (R&D Systems) was used according to the manufacturers instruction.
In vitro culture of splenic mononuclear cells
Splenic mononuclear cells were isolated using Histopaque-1083 (Sigma-Aldrich) and cultured in RPMI 1640 containing 10% FCS for 2 days with or without drugs. Supernatant was collected and the levels of anti-histone/dsDNA Abs were determined using ELISA at 1/2 dilutions. The levels of total IgG were determined using ELISA at 1/5 dilutions. The drugs used were AG490 (Alexis Biochemicals), manumycin A (Sigma-Aldrich), and perillyl alcohol (POH) (Sigma-Aldrich). Monoclonal anti-IL-6 Ab and the isotype control were purchased from BD Pharmingen.
Flow cytometry and intracellular staining
Intracellular IL-6 staining was conducted using a Cytofix/Cytoperm Plus kit (BD Pharmingen) according to the manufacturers instruction. Briefly, freshly isolated splenic mononuclear cells were stained with FITC conjugate of anti-B220, anti-CD4, or anti-CD11b (BD Pharmingen) at 4°C for 20 min after incubation with Fc Block (BD Pharmingen) for 15 min. After washing, the cells were permeabilized with Cytofix/Cytoperm, washed twice with Perm/Wash buffer, and stained with PE conjugate of anti-IL-6 mAb or isotype control (BD Pharmingen) for 30 min at 4°C. The cells were washed twice with Perm/Wash buffer and resuspended in PBS containing 1% FCS and 0.1% sodium azide before acquisition of the data on a FACScan (BD Biosciences) with CellQuest software (BD Biosciences). The data were analyzed with FlowJo software (Tree Star).
Treatment of mice with POH
B6.Sle1ab mice were treated with i.p. administration of 75 mg of POH/kg of body weight or vehicle control daily for 14 days. The vehicle for POH was Tricaprylin (Sigma-Aldrich). Sera were collected before and after treatment. Levels of anti-histone-DNA Abs in the sera were measured by ELISA as described above.
Statistics
Results were expressed as the mean ± SE and compared using unpaired Students t test. Differences were considered significant at p < 0.05.
| Results |
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Variations in global gene expression were sought by comparing B220+ splenic B lymphocytes isolated from age- and gender-matched B6 and B6.Sle1ab mice early in the initiation of autoimmunity to nuclear Ags (3- to 4-mo-old female mice recently converted to ANA). Our initial analyses used Clontechs Atlas Mouse 1.2 Array, which detects 1,176 genes with a variety of roles in biological processes such as oncogenesis, cell signaling, cell cycle, and apoptosis. Subsequently, we expanded the analysis by the addition of custom-fabricated cDNA slide arrays containing 12,000 genes (see http://microarraycore.swmed.edu/website for gene list). Representative results of some of these microarray analyses are presented in Fig. 1. As expected, B lymphocytes from separate B6 mice express these genes at similar levels (Fig. 1A). In contrast, comparisons of B lymphocytes of age- and gender-matched B6 and B6.Sle1ab revealed a distinct subset of genes with changes in gene expression.
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SOCS3 expression is consistently up-regulated >3-fold in comparisons of age- and gender-matched B6 and B6.Sle1ab splenic B lymphocytes (Fig. 1, B and C), while SOCS1 expression is unchanged. This up-regulation was confirmed by quantitative RT-PCR of splenic B cell mRNAs isolated from cohorts of both B6.Sle1 and B6.Sle1ab mice (Fig. 1D). The SOCS gene family encodes proteins that are induced in cells responding to stimulation by cytokines (10). Since SOCS family transcription has been shown to be up-regulated in response to STAT phosphorylation (11, 12), we compared the levels of phosphorylated STATs in B lymphocytes freshly isolated from B6 and B6.Sle1ab mice. As shown in Fig. 2, phosphorylated STAT3 is clearly increased in Sle1ab B lymphocytes (Fig. 2A), although no difference was observed in the levels of phosphorylated STAT1, STAT5, or STAT6 (data not shown). These results are consistent with previous reports indicating that SOCS3 is induced in response to STAT3 phosphorylation (13, 14, 15, 16).
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STAT3 phosphorylation is induced by IL-6 and potentially several other cytokines (17, 18, 19, 20). Consequently, we assayed serum levels of IL-2, IL-4, IL-5, IL-6, IL-10, TNF-
, and IFN-
levels in B6 and B6.Sle1ab mice at 4 mo of age. As shown in Fig. 3A, this analysis revealed statistically significant increases in the IL-6 levels in the serum of B6.Sle1ab mice. Levels of TNF-
and IL-5 were only slightly elevated in some B6.Sle1ab mice, whereas no change in the level of IL-2, IL-4, IFN-
, or IL-10 was detected (data not shown).
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Although these analyses of ex vivo splenic B cells from B6.Sle1ab mice establish that variations in STAT3 activation and IL-6 are correlated with ANA production, they do not establish that B cells producing ANA are dependent upon these phenotypes. To address this issue, we assessed the effect of inhibiting these functions on the production of ANA by short-term cultures of splenocytes isolated from ANA+ B6.Sle1ab mice. As shown in Fig. 4A, neutralizing anti-IL-6 Ab significantly inhibited ANA production in 48-h in vitro cultures of B6.Sle1ab splenocytes. These results establish that IL-6 plays a key role in driving the production of ANA by autoimmune B lymphocytes in B6.Sle1ab mice. Similarly, the STAT3 inhibitor AG490 greatly suppressed ANA production in a similar experimental system (Fig. 4B). These results indicate that STAT3 activation via IL-6 stimulation is key in the generation of ANA by splenic B cells of B6.Sle1ab mice.
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As shown in Fig. 5A, gene expression profiling of B6.Sle1ab splenic B cells revealed a significant up-regulation in the expression of the gene encoding the
-chain of farnesyltransferase. Since farnesyltransferase catalyzes the posttranslational farnesylation of ras (21, 22, 23), a key step in the activation of the ras pathway, this result suggests that the ras signaling pathway in B lymphocytes of B6.Sle1ab mice is activated. As shown in Fig. 5B, immunoblot analysis of ERK1/ERK2 indicated that the ERK2 pathway is more active in B6.Sle1 B lymphocytes, consistent with increased Ras-mediated signaling in bulk splenic B lymphocytes of B6.Sle1ab mice. However, no significant difference in JNK and P38 MAP kinase pathways was detected (data not shown).
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The impact of farnesyltransferase inhibitors manumycin A and POH on ANA production by short-term cultures of B6.Sle1ab splenocytes was assessed to determine whether the detected Ras-ERK activation was directly involved with ANA production by splenic B cells. Both of these compounds inhibit ras signaling via inhibition of ras protein farnesylation (24, 25, 26). Splenocytes from ANA-positive B6.Sle1ab mice were cultured with different concentrations of manumycin A or POH for 2 days, and the levels of anti-histone/dsDNA Abs in the supernatants were determined. As shown in Fig. 6, A and B, both agents inhibit ANA production and total IgG production in these short-term cultures. These results establish that the ras pathway plays a key role in ANA production in B6.Sle1ab mice.
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| Discussion |
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9 mo of age, at which time ANA penetrance is
90% in females. Since the anti-chromatin Abs produced by B6.Sle1ab mice are not pathogenic and do not preferentially utilize the same VH genes as pathogenic autoantibodies that are produced in polycongenic strains such as B6.Sle1Sle3 (9), these results suggest that the crucial role that Sle1ab plays in the initiation of severe autoimmunity is to potentiate the development of a chronic activation phenotype in lymphocytic lineages, rather than the specific production of anti-chromatin Abs. Although the majority of the genes that are differentially expressed in B6.Sle1ab B lymphocytes are predictable molecular players in immune activation, our analysis identified an aberrant activation in three interrelated molecular pathways with relevance to lupus susceptibility: IL-6 secretion, SOCS3/STAT3 activation, and ras/MAPK activation. The importance of each of these pathways in the production of autoantibodies by B lymphocytes was validated via analysis of protein expression and/or phosphorylation status in freshly isolated ex vivo B lymphocytes. In addition, inhibitors of the pathways could be shown to suppress ANA production by B lymphocytes in short-term culture and in vivo administration of farnesyltransferase inhibitors significantly decreased ANA production in B6.Sle1ab mice. Taken together, these results validate this approach for the identification of dysregulated molecular pathways in autoimmunity and identify three strong candidate pathways for therapeutic intervention in autoantibody production.
Previous studies have implicated IL-6 as a key cytokine in systemic lupus erythematosus pathogenesis in humans as well as lupus-prone murine models (26, 27, 28, 29). Our results indicate that this pathway is an important early element in the production of autoantibodies by B6.Sle1ab mice. Based on the patterns of activation detected in our analysis, increased proportions of monocytes and B lymphocytes secreting IL-6 are detectable early in the development of ANA production. It is reasonable to predict that increased levels of IL-6 drive the activation of the STAT3 and SOCS3 pathways as well as ras activation and ERK/MAPK phosphorylation. However, since Ras-ERK activation is downstream of many signaling pathways, it is also possible that the aberrant activation of the Ras-ERK pathway is independent of the IL-6 signaling pathway. As aforementioned, we did see the increase of ERK2 phosphorylation preceding the increase of STAT3 phosphorylation when ANA was still negative. It has been documented that B cell activation can lead to the production of IL-6 (30, 31). Therefore, one possible mechanism for increased IL-6 production in B6.Sle1ab mice is that intrinsic B cell signaling defects involving aberrant activation of ERK2 lead to the dysregulated B cell activation, which in turn results in the elevated production of IL-6. IL-6 can then act on B cells to enhance the activation (through STAT3 as well as Ras-ERK pathways) and Ab production. In this case, altered CD4+ T cell activation and an increase in the size of CD11b+ mononuclear cell population may only be the downstream effects of B cell activation.
It is interesting to note that we detected activation of SOCS3 and STAT3 simultaneously in ex vivo B lymphocytes of B6.Sle1ab mice. Since SOCS3 is a suppressor of IL-6 signaling, its elevated expression under normal circumstances would be predicted to down-regulate IL-6 signaling in B lymphocytes and subsequently extinguish STAT3 activation (11, 16, 19, 32, 33). Thus, there are at least three possible explanations for the coexistence of elevated levels of activated STAT3 and up-regulated expression of SOCS3 in B6.Sle1ab. First, chronic elevation of IL-6 levels may mediate activation in some subsets of B lymphocytes so strongly that an elevated expression of SOCS3 is insufficient to suppress the activated STAT3 signaling. Alternatively, STAT3 activation may be mediated by an IL-6-independent pathway in Sle1ab B lymphocytes which cannot be extinguished by SOCS3. Finally, elevated SOCS3 and active STAT3 may be expressed in distinct subsets of splenic B lymphocytes in B6.Sle1ab mice. In this scenario, B lymphocytes that actively produce ANA have silenced SOCS3 and are being driven by the activated IL-6/STAT3 pathway, whereas B lymphocytes that are not responding have suppressed STAT3-mediated activation by up-regulating SOCS3. This possibility is consistent with the potent effect of inhibitors of both IL-6 and STAT3 on ex vivo secretion of ANAs by B lymphocytes from B6.Sle1ab mice. We are in the process of developing an in vivo system to assess the potential impact of modulating IL-6 secretion and SOCS3 expression by B lymphocytes to evaluate in more detail the role of this pathway in the activation of B lymphocytes in B6.Sle1ab mice.
Finally, our in vivo analysis of inhibition of farnesyltransferase with POH validates the potential efficacy of inhibiting this pathway as a therapeutic intervention in lupus. Farnesyltransferase has been identified as a target for cancer therapy and pharmaceutical companies are currently testing specific inhibitors in human trials. Our results indicate that these inhibitors may also be of value in the treatment of systemic autoimmunity. We are in the process of assessing the efficacy of farnesyltransferase inhibitors in the treatment of other murine models of systemic autoimmunity, to assess the importance of the ras pathway in murine models with more severe pathology.
| Acknowledgments |
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| Footnotes |
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1 This work was supported by grants from the National Institutes of Health (PO1 AI 39824 to E.K.W.) and Alliance for Lupus Research (to E.K.W.). K.L. is a recipient of National Institutes of Health National Research Service Award (5 F32 AR48058). ![]()
2 Address correspondence and reprint requests to Drs. Kui Liu and Edward Wakeland, Center for Immunology, University of Texas Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-9093. E-mail addresses, respectively: kui.liu{at}utsouthwestern.edu and edward.wakeland{at}utsouthwestern.edu ![]()
3 Abbreviations used in this paper: ANA, antinuclear antibody; POH, perillyl alcohol; SOCS, suppressor of cytokine signaling; EST, expressed sequence tag. ![]()
Received for publication August 25, 2004. Accepted for publication November 2, 2004.
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