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* Department of Epidemiology and Parasitic Diseases, Faculty of Medicine, Pharmacy and Odonto-Stomatology, and
Service of Internal Medicine, National Hospital of Point "G", Bamako, Mali;
Laboratory of Parasitology-Mycology, Faculty of Medicine, Institut National de la Santé et de la Recherche Médicale, Unité 399, Marseille, France; and
Disease Prevention and Control Program, Department of International Health, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD 21205
| Abstract |
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| Introduction |
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In a previous report, we have studied the prevalence and intensities of infection by S. haematobium in two Dogon communities of Mali and show that high infections are clustered in certain families suggesting some hereditary components in the control of infection. In contrast, we have also shown that infection levels by S. mansoni in a Brazilian population are controlled by a major locus on chromosome 5q31-q33 (6, 7). This result was further confirmed by an independent study in Senegal (8). This genetic region contains several genes related to immune function including the Th2 cluster that contains IL4, IL5, and IL13 genes (9, 10, 11). We and others have shown that sterile immunity in human schistosomiasis is dependent on IgE levels and eosinophils (12, 13, 14, 15) and on the Th1/Th2 balance (16, 17). Altogether, these observations led us to test whether any allelic variants in the 5q31-q33 region would predispose to high S. haematobium infection and the IL4, IL5, and IL13 genes were excellent candidates. Our data confirm that polymorphisms in the IL13 gene promoter are associated with susceptibility to Schistosoma infection.
| Materials and Methods |
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This study was conducted in the populations of two Dogon villages (Boul and Ségué) in the district of Bankass, 200 km from Mopti in Mali. All study subjects were Dogon. Boul and Ségué were built up a hillside and at the top of the hill, respectively. The populations of these two villages are interrelated because marriages between subjects from the two villages are frequent. All health and educational equipments (a primary care unit and a primary school) are located in Ségué. A seasonal (June to January) river provides water for drinking, domestic use, and irrigation to both villages. The inhabitants of Ségué also have access to water from a deep well. Small dams have been built in the river to allow the cultivation of vegetables from October to June. Agriculture, gathering, and breeding are the main economical activities. The study was performed on all subjects older than 4 years (693 subjects in Ségué and 148 in Boul) except those (2%) who refused to participate or were traveling. All the subjects included in this study have signed a consent form.
Parasitological methods
S. haematobium infections were quantified by counting eggs in urine (18) and by measuring serum levels of circulating anodic Ag (CAA) 4 produced by the adult worms (19). Individual infection levels are the arithmetic mean egg counts on three to seven samples. To ensure quality control of the egg count, 10% of the filters were randomly selected and recounted by another microscopist. No S. mansoni eggs were encountered in feces samples taken on 2 different days from 200 young subjects.
Blood samples and DNA preparation
Five to 15 ml of blood were collected on sodium citrate and kept at 20°C until DNA was extracted using the standard salting-out method (20).
PCR conditions
PCR amplifications were conducted on a robocycler gradient 96 (Stratagene) in a 30-µl reaction containing 100 ng of DNA, 10 mM Tris-HCl, pH 9, 0.1% Triton X-100, 50 mM KCl, 0.2 mg/ml BSA, 1.5 mM MgCl2, 1 µM of each primer, 1 mM of dNTP and 1.5 U of Taq polymerase (Appligene). Following the initial denaturation step (94°C, 5 min), samples were subjected to 35 cycles of PCR consisting of 94°C for 1 min, annealing temperature for 45 s and 72°C for 45 s.
Single-stranded conformational polymorphism (SSCP) analysis
PCR products were analyzed by SSCP (21). A total of 20 µl of PCR product was mixed with 20 µl of 0.2N NaOH solution and denatured at 95°C for 5 min. Twenty microliters of loading buffer were added to the denatured products before electrophoresis on acrylamide gel in 1x Tris boric acid EDTA buffer at 7 mA (constant amperage) for 16 h at 4°C or room temperature. After which the gel was stained for 10 min in ethidium bromide solution (1 µg/ml). The analysis was performed at 4°C and at room temperature to increase the detection power of the analysis. The overlapping sets of primers, used in this analysis, are described in Table I.
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Purified PCR products were sequenced using ABI Prism BigDye Terminator cycle sequencing system (Applied Biosystems) on the ABI Prism 310 automatic sequencer. Sequencing reactions were performed on both strands.
Allelic typing
Five polymorphisms have been identified in this study. The IL4-590T/C polymorphism revealed by SSCP analysis as previously described. The IL13-1258A/G polymorphism destroys a BseRI restriction site. So, population typing was performed by restriction analysis of the corresponding PCR products as specified by the enzyme manufacturer (New England Biolabs).
The polymorphism IL13 arg130gln was previously described by Graves et al. (22). A 236-bp PCR fragment including the IL13 arg130gln polymorphism was generated with use of the primers 5'-GCAAATAATGAGCTTTCGAAGTTTCAGTGG-3' and 5'-CTTCCGTGAGGACTGAATGAGACGGTC-3'. The underlined bases were modified to create NlaIV restriction sites. The NlaIV restriction analysis of the PCR product obtained from subjects bearing the IL13 arg130glnA allele gives two bands (210 and 26 bp) on acrylamide gel whereas the same analysis performed on subjects bearing the IL13 arg130glnG allele gives three bands (178, 32, and 26 bp).
The IL5-202C/T, IL13-1055C/T, and IL13-591A/G polymorphisms were typed by primer extension reactions and denaturing high-performance liquid chromatography analysis of the products. Previous to the primer extension reaction, unincorporated primers and dNTPs were removed by treating 5 µl of each PCR with 0.5 U of shrimp alkaline phosphatase and 5 U of exonuclease I (both from Amersham). The reactions were incubated 20 min at 37°C, after which the enzymes were inactivated by incubation at 80°C for 15 min. Primer extension reactions were conducted in 20 µl containing 5060 ng of the template fragment (the purified PCR product), 1 µM of the appropriate dideoxy (dd) NTPs, 15 pmol primer, and 0.5 U of Thermo Sequenase (Amersham), in the buffer provided by the manufacturer. The reaction was performed in a thermal cycler with an initial denaturation step of 1 min at 96°C followed by 50 cycles of 96°C for 10 s, 43°C for 15 s, and 60°C for 1 min. At the end of thermal cycling, the reaction was heated to 96°C for 30 s and immediately placed on ice. Separation of the extended primers was then performed by denaturing high-performance liquid chromatography on a Wave HPLC instrument (Transgenomic). Fifteen microliters of the primer extension reaction were loaded on a SaraSep DNASep column (Transgenomic) at 70°C. Samples were eluted from the column using a linear acetonitrile gradient in a 0.1 M triethylamine acetate buffer (TEAA), pH 7, at a constant flow rate of 0.9 ml/min. The gradient was created by mixing eluents A (0.1 M TEAA) and B (25% acetonitrile in 0.1 M TEAA). The gradient was 1828% buffer B over 5 min for both single nucleotide polymorphisms (SNPs). Data were acquired using a UV detector at 260 nm. The extension primers were 5'-AGGGATTGTCAAAGTTCA-3' for IL13-591A/G, 5'-ATTAACCCAAAGATTCTT-3' for IL5-202C/T, and 5'-GGGTTTCTGGAGGACTTC-3' for IL13-1055C/T. The appropriate ddNTPs were ddCTP for IL13-1055C/T and IL13-591A/G whereas ddGTP was used for the IL5-202C/T.
Statistical analysis
Linkage disequilibrium analysis was performed on the Genepop web site (
http://wbiomed.curtin.edu.au/genepop/index.html
). Associations between individual polymorphisms and infection levels were sought by use of the Family-Based Association Test Package (FBAT; version 1.2) (23). As other family-based association tests, this method is not susceptible to bias due to population admixture and tests for excess transmission of a particular allele from parents to affected offspring. The phenotype under study (infection level) depends on several covariates; some of these covariates could be confounder for the effect of others and their effect on the phenotype must be tested simultaneously (multivariate analysis). The multivariate method used here is logistic regression that specifies a regression relationship between the probability of an individual to develop a high infection level and various covariates, as follows:
P(M+/X1,X2,... Xp) = [1 + exp{(
+ 
iXi)}]1, where P(M+/X1,X2,... Xp) is the probability of being affected knowing X1 to Xp covariates;
and
are constants and estimated in the analysis. The analysis tests whether
i is significantly different from zero. Note that exp{
i} is the odds ratio associated with the covariate Xi, which measures the strength of the association between
and the phenotype, taking into account (adjusted to) the other covariates. With the stepwise procedure one can select the covariates significantly (p < 0.05) associated with the risk of being affected. The statistical SPSS software (version 10.0) was used for this analysis. Statistical data presented in this manuscript were not corrected for multiple testing. However, if we are applying these corrections, the main association stays significant.
Nuclear extract preparation
Nuclear extracts were prepared from PHA-stimulated fresh human peripheral blood T cells as described previously for 2 days, washed under acid conditions and cultured in 10% RPMI 1640 for 1 day without PHA before stimulation (24). Then cells were either left unstimulated or stimulated with IL-4 (100 ng/ml) or stimulated with 10 ng/ml PMA + 1 µg/ml ionomycin (I) for 30 min. Cell pellets were resuspended in lysis buffer (50 mM KCl, 25 mM HEPES, pH 7.8, 0.5% Nonidet P-40, 1 mM PMSF, 10 µg/ml leupeptin, 20 µg/ml aprotinin, 100 mM DTT), and subsequently incubated on ice for 5 min. Nuclei were collected by centrifugation at 2000 rpm, the supernatant was harvested as the cytoplasmic protein fraction. Nuclei were washed in buffer A without Nonidet P-40 and harvested at 2000 rpm. Nuclear pellets were resuspended in extraction buffer (500 mM KCl, 25 mM HEPES, pH 7.8, 10% glycerol, 1 mM PMSF, 10 µg/ml leupeptin, 20 µg/ml aprotinin, 100 mM DTT), frozen in dry ice, thawed slowly on ice, and finally centrifuged at 14000 rpm for 10 min. The supernatant was harvested and nuclear proteins quantified with the bicinchoninic acid protein assay reagent (Pierce).
EMSA
Complementary single-stranded oligonucleotides were commercially synthesized to span
10 bp on either side of the variant nucleotide as follows: IL13-591, 5'-agacctggaa(a/g)tctgaacttt-3'.
Complementary strands were annealed by combining 2 µg of each oligonucleotide and 6 µl of 10x annealing buffer (500 mM Tris, 100 mM MgCl2 and 50 mM DTT) in a 60-µl reaction, placing them in a boiling water bath for 5 min, and allowing them to cool to room temperature. Then, 2 µl of the double-stranded oligonucleotide probes were labeled with [32P]dCTP. The DNA-protein binding reaction was conducted in a 20-µl reaction mixture consisting of 7 µg of nuclear protein extract from each cell condition, 1 µl of 1 mg of poly(dI-dC) (Sigma-Aldrich), 4 µl of 5x binding buffer (60 mM HEPES, 7.5 mM MgCl2, 300 mM KCl, 1 mM ethylenediamine-tetraacetic acid, 2.5 mM DTT, 50% glycerol, and [4-(2-aminoethyl)-benzenesulfonyl fluoride hydrochloride]) and 1.5 x 104 cpm of 32P-labeled oligonucleotide probe (25). The DNA-protein binding reaction was incubated at room temperature for 20 min, then loaded on a 6% non-denaturing polyacrylamide gel and run for 2 h at 140 V.
| Results |
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This study was conducted on subjects with high infection levels and their parents. Occasionally, the genotype of a missing parent was inferred from two siblings. Because infection intensities and prevalence were shown to be lower in Ségué than in Boul, the infection intensity (120 eggs/ml urine) defining the 10% most infected subjects in Ségué was used as general cut-off value in both villages to define the high infection subjects who were included in the analysis. Fig. 1 shows that this cut-off was met by 16.4% of Boul inhabitants. Fig. 1 also confirms that the highest infections were observed in Boul: 0.8% and 2.1% of inhabitants of Ségué and Boul, respectively, excreted >960 eggs. All subjects with infection levels >120 eggs/20 ml urine (three to six independent experiments) were included in the study if their parents had given blood. When there was more than one child excreting >120 eggs/20 ml in a nuclear family, the child with the highest infection was selected.
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The search for polymorphisms in the promoters of the IL4, IL5, and IL13 genes was performed on 989, 502, and 1876 bp for IL4, IL5, and IL13, respectively, because these regions contain transcriptional regulatory elements.
IL4 SNP analysis
Three sets of primers were used to detect polymorphisms within the IL4 gene. The second and third primer sets, that are overlapping, detected the same polymorphism (data not shown). PCR products from several subjects were sequenced in both directions (data not shown). Sequence alignments provided evidence that these two primer sets detected the IL4-590C/T polymorphism previously described (27). The first and fourth sets of primer did not detect additional mutation.
IL5 SNP analysis
No polymorphism has yet been reported in the IL5 gene. Two sets of primers were used to analyze the promoter (Fig. 2A). The second set of primers detected one mutation by SSCP analysis. The PCR products, obtained with this set of primers, revealed different patterns in subjects 1028 or 1029 suggesting the existence of one polymorphism (Fig. 2B). PCR products from these subjects were sequenced on both strands. Chromatograms and sequence alignments showed a G to A transition at position 202 from the transcription start (Figs. 2, C and D). Subject 1028 is heterozygous (G/A) whereas subject 1029 is homozygous (G/G) at this position.
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Eight sets of primer were necessary to study the IL13 promoter (Fig. 2A). PCR products, obtained with the third set of primers, from subject 945 showed different patterns compared with the patterns from subject 965 (Fig. 2E). The sequence of the PCR products showed an A to G transition at position 1258 from the transcription start (Fig. 2, F and G). This transition destroys a BseRI restriction site. The fourth set of primers also detected a polymorphism corresponding to the previously described IL13-1055 polymorphism (data not shown) that has also been referred to as IL13-1111. Finally, PCR products, obtained with the sixth primer set, from subjects 559 and 554, identified an A to G transition at the position 591 from the transcription start (Fig. 2, HJ) that creates a DrdI restriction site.
Distribution of the polymorphisms in the study population
To these five polymorphisms was added the polymorphism IL13 Arg130Gln which has been associated with increased serum IgE levels in three different populations with asthma (22). The frequencies of these various polymorphisms, in the parents, are shown in Table II. Statistical analysis showed that these polymorphisms were in Hardy-Weinberg equilibrium (
2 < 5.99).
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The family-based association test was used to analyze the transmission of alleles from the heterozygous parents to high infection children (23). The most frequent alleles, in the study sample, were IL4-590T, IL5-202C, IL13-1258A, IL13-1055C, IL13-591A, and IL13 Arg130Gln G. In an additive model, polymorphism IL13-1055C/T showed a trend for an association. Indeed, 29 children, born to heterozygous parents, had the IL13-1055C allele, as compared with the expected number (n = 23) based on the hypothesis of no association (Z = 1.94 and p = 0.05). For the polymorphism IL13-591A/G, 21 children had received the IL13-591A allele, which is significantly different from the number (n = 15.8) predicted based on the hypothesis of no association (Z = 2.44 and p = 0.01) (Table III). In a recessive model, for the polymorphism IL13-591A/G, 9 children, born to heterozygous parents, had the IL13-591A allele, which is different (Z = 2.94 and p = 0.003) from the expected number (n = 4.3) based on the hypothesis of no association (Table III). These results suggest that alleles IL13-1055C and IL13-591A are associated with an increased risk of infection.
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The results described above suggest that alleles IL13-1055C and IL13-591A are associated with an increased risk of infection. A significant linkage disequilibrium was found between these two polymorphisms (p < 105). To test this observation further, we genotyped the whole study population for the IL13-1055C/T and IL13-591A/G polymorphisms. We tested for an association between subject genotypes and infection levels by linear regression (stepwise procedure) including all variables that are known to affect infection by schistosomes in that population (age, gender, and village of origin). This analysis showed that age (p < 103), gender (p < 103), village (p < 103), and IL13-1055C/T genotype (p = 0.04) were all significantly associated with infection in the whole population (and IL13-591A/G was excluded). This result was more significant when the analysis was limited to the village where exposure and infection levels were the highest (Boul) (genotype, p = 0.002). IL13-1055C/C and IL13-1055C/T were associated with the highest infection levels, whereas IL13-1055T/T was associated with the lowest infection levels. This result is illustrated in Fig. 3 which shows the average egg excretion for the three genotypes in the whole study population.
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The effect of the IL13-1055 genotype could be due to an effect on egg excretion and/or on the schistosome larvae, the elimination of which is associated with strong IgE and eosinophil immune responses (12, 13, 14, 15). To determine which of these hypotheses is correct, we quantified circulating worm Ags (CAA), which are an indicator of worm load, in the blood of all villagers and looked for an association with the IL13-1055 genotypes. The IL13-1055T/T genotype was associated with lower CAA levels in blood than the other two genotypes (Fig. 4). To further test this result, we performed a multivariate analysis, including other variables known to affect CAA levels. In the whole population, using a linear regression analysis, we found a trend (p = 0.1) toward an association between IL13-1055 genotypes and CAA levels when taking into account age (p < 103) and the village of origin (p < 103) (the other variables were excluded). When the study was limited to Boul village, the significance of the association increased (p = 0.02). Thus, IL13-1055 genotypes are also associated with worm load, with IL13-1055T/T subjects having the lowest worm load. The fact that this association was weaker than that with eggs suggests that IL13 may be involved in protective immunity against both larvae and eggs.
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We examined whether IL13-591A/G SNP modified putative transcriptional regulatory motifs (
www.gene-regulation.com/pub/programs/alibaba2/index.html
). A sequence motif (tggagaacctggaaatctgaactttgacaa) incorporating the SNP at position 591 is predicted to bind the transcription factor Oct-1 (motif sequence: ATGCAAAT). The A to G transition identified at the position 591 from the transcriptional start site alters this predicted binding motif. It raises the possibility that this polymorphism results in differential DNA-protein interactions, resulting in altered regulation of IL-13 production. EMSA, using nuclear extracts from PHA-activated human peripheral T cells that were stimulated with IL-4 or PMA + ionomycin, was performed to determine whether DNA protein interactions were altered by the polymorphisms at either site. The IL13-591G allele formed only one DNA protein complex as the IL13-591G allele. The complex does not depend on the kind of stimulation applied (Fig. 5). Competition with cold probes or unspecific probe (SP-1: ggggaggcgtggcctgggcggactggggagtggcga) does not alter this complex formation. Under these stimulation conditions, however, no difference in DNA-protein interaction was observed. Thus, we have no evidence that the polymorphism IL13-591A/G may modify the transcription level of the IL13 gene.
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| Discussion |
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IL-13 could play a unique role in skin and lung immunity against schistosome. First, IL-13 is critical for the entry and survival of eosinophils in the skin and in the lungs, as shown in various pathological conditions (30, 31, 32, 33). IL-13 increases VCAM1 expression on endothelial cells (34), which enhances eosinophil adherence via
1 integrin. IL-13 also increases CD69 expression on eosinophils (35) and the production of GM-CSF by epithelial cells (36). Both of these actions increase eosinophil survival. Second, IL-13 may play a unique role in the induction of the Th2 response by the skin route (37). Indeed, IL-13, more than IL-4, has been shown to be required for the priming of a Th2 response by soluble persistent Ags in the skin. In addition to this skin priming effect, IL-13 exerts positive actions during the induction of Th2 responses (38, 39, 40, 41).
IL-13 may also play a role in egg destruction by eosinophils in the intestine and bladder. IL-13 was also shown to play an important role in mouse gut immunity to Nippostrongylus brasiliensis (42) by stimulating secretion of mucus by goblet cells and possibly by its effects on eosinophils. Hence, it appears that IL-13 plays a unique role in Th2-mediated immunity in skin and gut. Research on asthma has also indicated that IL-13 plays unique effects in Th2 immunity in the lungs (32, 33).
Urinary disease is caused by schistosome egg and worm Ags. Fibrosis of ureters is an important factor in hydronephrosis. Reducing the number of eggs should prevent fibrosis and disease. This, however, does not account for the effects of IL-13 on eosinophils, which contribute to inflammation and tissue damage, and hence to extracellular matrix protein deposition. Furthermore, IL-13 has strong profibrogenic effects as documented in S. mansoni-infected mice (43) in which IL-13 was shown to increase collagen deposition in the liver (44). Therefore, on the one hand, IL-13 may protect against infection and therefore reduce the risk of disease and, on the other hand, IL-13 may contribute to disease by increasing eosinophil infiltration and promoting fibrosis. However, we did not detect an association between kidney hydronephrosis or bladder wall thickening and IL13-1055C/T or IL13-591A/G (data not shown). The effects of IL-13 on anti-infection but not on anti-disease immunity are consistent with our previous finding that infection and hepatic fibrosis are subject to separate genetic control in humans with chronic S. mansoni infections. One major gene on chromosome 5q31-q33 controls infection (6, 7). Another major locus controls periportal fibrosis and maps close to IFNGR1 on 6q23 (45). Protection against infection is linked to a Th2 immune response, whereas protection against disease is increased by IFN-
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We conclude that protection against schistosomes is increased by the IL13-1055T/T genotype, which also aggravates asthma (46). Finally, we would like to advance the following hypothesis that will need confirmation. Helminth infections have long been suspected to have selected for alleles that predispose to asthma and atopy. It is unlikely that this selective effect is related to enhanced resistance to urinary tract disease because we did not find an association between urinary tract disease and either of the IL13-1055 alleles. However, eggs and the eosinophil-infiltrated egg granuloma cause considerable disease of the genital tract in young women: up to 75% of women living in areas in which S. haematobium is endemic suffer from lesions of the uterus, cervix, vagina, or vulva. Female genital schistosomiasis is associated with infertility (47), abortion, extrauterine pregnancy (48), and spread of the agents responsible for sexually transmitted diseases (49). Epithelial lesions, tumors, and ulcers are associated with the presence of S. haematobium eggs in the lower genital tract (50). These pathological disorders have significant effects on divorce: husbands of women with female genital schistosomiasis are more likely to have children with other women (51). These effects of S. haematobium eggs on female reproductive capacity may select for IL13 genotypes that reduce egg load in genital tissues but aggravate the risk of asthma (47, 48, 49, 50, 51).
| Disclosures |
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| Footnotes |
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1 This work received financial assistance from Institut National de la Santé et de la Recherche Médicale, the World Health Organization (ID096546), the European Economic Community (TS3 CT940296, IC18CT970212), the Scientific and Technical Cooperation with Developing Countries (IC18CT980373), the French Ministere de la Recherche et des Techniques (Programme de Recherche Fondamentale en Microbiologie, Maladies Infectieuses, et Parasitaires), the Conseil Général Provence Alpes Côte dAzur, and the Conseil Régional Provence Alpes Côte dAzur. ![]()
2 B.K. and C.C. contributed equally. ![]()
3 Address correspondence and reprint requests to Dr. Christophe Chevillard, Laboratory of Parasitology-Mycology, Faculty of Medicine, INSERM Unité 399, 27, Boulevard Jean Moulin, 13385 Marseille Cedex 5, France. E-mail address: christophe.chevillard{at}medecine.univ-mrs.fr ![]()
4 Abbreviations used in this paper: CAA, circulating anodic Ag; SSCP, single-stranded conformational polymorphism; TEAA, triethylamine acetate buffer; SNP, single nucleotide polymorphism; dd, dideoxy. ![]()
Received for publication October 13, 2004. Accepted for publication February 28, 2005.
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, and Stat6 are required for the expulsion of the gastrointestinal nematode parasite Nippostrongylus brasiliensis. Immunity 8: 255-264.[Medline]
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