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Department of Immunology, Cleveland Clinic Foundation, Cleveland, OH 44195
| Abstract |
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| Introduction |
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The regulation of cytokine and chemokine genes that determines the magnitude and duration of inflammatory response is highly evolved and appears to operate at virtually every stage of gene expression including transcription, cytoplasmic mRNA decay, and translation (7, 8, 9, 10, 11, 12). Although the molecular basis for inducible transcription of inflammatory cytokine genes is understood in some detail, knowledge of mechanisms mediating posttranscriptional control is only now emerging (7, 8, 9, 10, 11, 12). mRNA metabolism, including both decay and translation, is known to involve adenosine and uridine (AU)-rich nucleotide sequence elements (AREs) in the 3' untranslated region (UTR) of select mRNAs that confer instability (9, 10, 13). More recently, the ability of extracellular stimuli to modulate the rate of decay as well as translation of ARE-containing mRNAs has been clearly demonstrated though these responses remain poorly understood in mechanistic terms (14, 15, 16, 17). The impact of such posttranscriptional regulation is well exemplified by the behavior of TNF-
mRNA; mice expressing a form of TNF-
mRNA in which the ARE has been deleted exhibit a lethal, postnatal systemic inflammatory syndrome and a similar phenotype is obtained in mice deficient for the tristetraprolin gene that recognizes this regulatory sequence (12, 18, 19).
Both LPS and IL-1 have been reported to promote stabilization of ARE-containing mRNAs (14, 17, 20). These agents act through TIR family receptors (IL-1R1 and TLR4), and the signaling pathways involved have been the subject of intense recent interest (3, 5, 21). IL-1R and TLR4 are both able to stimulate proinflammatory gene expression via a process that depends upon the adaptor protein MyD88 either alone (for IL-1R) or in combination with a second adaptor, MyD88 adaptor-like (Mal) protein, and this combination has been termed the "MyD88-dependent" pathway (22, 23). Both TLR4 and TLR3 can also induce a subset of events through a "MyD88-independent" pathway that involves activation of IFN regulatory factor 3 and ultimately expression of type I IFN (24, 25, 26). This pathway depends upon a separate set of TIR domain-containing adaptor proteins termed Toll receptor IFN-inducing factor (Trif) and Trif-related adaptor molecule (Tram) (27, 28).
In the present study, we wished to determine whether TIR family members exhibiting differential use of these adaptors and signaling pathways possess comparable capacity to promote stabilization of sensitive ARE-containing mRNAs. The results demonstrate that IL-1R1 and TLR4 but not TLR3 can couple effectively to mRNA stabilization. Furthermore, the ability of IL-1R1 and TLR4 to induce mRNA stabilization depends upon their use of individual TIR-containing adaptors: MyD88 and Mal efficiently enhance mRNA stability whereas Trif and Tram are relatively inactive.
| Materials and Methods |
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DMEM, Dulbeccos PBS, and antibiotics were obtained from Central Cell Services, Lerner Research Institute (Cleveland, OH). Glutamine and agarose were purchased from PerkinElmer Life Sciences (Rockville, MD). FBS was purchased from BioWhittaker (Walkersville, MD). Formamide was obtained from International Biotechnologies (New Haven, CT). Magna nylon transfer membrane was obtained from Micron Separations (Westboro, MA). Recombinant human IL-1
and the KC ELISA kit were purchased from R&D Systems (Minneapolis, MN), and poly(IC), LPS, gentamicin sulfate (G418), and actinomycin D (ActD) were purchased from Sigma-Aldrich (St. Louis, MO). Doxycycline (Dox) was obtained from Clontech Laboratories (Palo Alto, CA). Superfect Transfection Reagent was obtained from Qiagen (Valencia, CA) and Tri-Reagent was purchased from Molecular Research Center (Cincinnati, OH). DuPont-NEN (Boston, MA) was the source of [
-32P]dCTP. The Luciferase Assay System was purchased from Promega (Madison, WI). Protein assay reagents were purchased from Bio-Rad (Richmond, CA).
Cell culture
Human embryonic kidney (HEK) 293 C6 cells expressing elevated IL-1R1 were prepared as previously described (29) and maintained in DMEM supplemented with 10% FBS, penicillin, and streptomycin in humidified 5% CO2. The 293 tet-off cells were prepared by stable transfection of the parental HEK 293 C6 line with a plasmid encoding the bacterial tet-repressor (tetR) protein fused with the VP-16 transactivation domain obtained from Clontech Laboratories and were maintained in G418. The HEK 293 C6 cell line was stably transfected with expression constructs (described below) encoding TLR3 or TLR4 and MD2 and selected on the basis of antibiotic resistance. An immortalized mouse endothelial cell line (H5V) was maintained as previously described (30).
Plasmids
Plasmids encoding KC, IL-8, GRO3, and GAPDH were as previously described (31, 32). A cDNA clone encoding ISG56 was obtained from Dr. G. Sen (Cleveland Clinic Foundation) (33). pTRE2 and pTRE2-luciferase vectors were purchased from Clontech Laboratories. pTRE2-KCcDNA was constructed as previously described (20). Luciferase reporter plasmids containing the promoter from the ISG56 gene (ISG56-luciferase) or five copies of the
B1 site from the mouse IFN-
-inducible protein 10 promoter were as previously described (33, 34). Plasmids encoding TLR4, TLR3, MD2, MyD88, Mal, Trif, and Tram were prepared by amplification of full-length coding sequences by RT-PCR using total RNA prepared from HEK 293 C6 cells or HeLa cells and inserted in the EcoR1 site of the expression plasmid pcDNA3.1. Expression constructs were designed to include epitope tags (FLAG or hemagglutinin (HA)) at the carboxyl terminus of the proteins. The cloned cDNAs were verified by sequencing in the Molecular Biotechnology Core facility of the Cleveland Clinic Foundation.
Cell transfection and RNA and luciferase analysis
Pools of 293 tet-off cells were transiently transfected using Superfect Transfection Reagent according to the manufacturers protocol. Three hours after transfection, the cultures were subdivided into 60-mm dishes and rested for 24 h before individual treatments. Total RNA was prepared using Tri-Reagent following the manufacturers instructions. The levels of RNA were analyzed and quantified by Northern blot hybridization as previously described (20, 32). Transfected 293 tet-off cells were used to prepare cell extracts and assess luciferase activity according to the manufacturers protocol.
KC protein analysis to estimate mRNA decay
Pools of 293 tet-off cells were transiently transfected as previously described. Twenty-four hours after transfection, the supernatants were removed and replaced with fresh medium. After 3 h, the supernatant was harvested and used to determine the amount of KC protein expression during 3 h before selective termination of reporter gene transcription. The plates were washed and fresh medium containing Dox with or without IL-1
was added and the cultures incubated for 3 h to allow mRNA decay to occur in the absence of transcription. The supernatants were discarded and cultures were washed extensively before addition of fresh medium containing Dox with or without IL-1
as indicated. After a final 3 h incubation, KC protein levels were determined in the supernatant by ELISA, reflecting the KC protein produced from mRNA remaining after 3 h of decay. The data are presented as the percentage of KC protein produced after Dox-induced transcription termination relative to that produced by the same culture before addition of Dox.
Western blot analysis
Western blot analysis was done essentially as previously described using 10% denaturing PAGE of total cytosolic extracts and ECL detection technology (35).
| Results |
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but are unresponsive to either LPS (for TLR4) or poly(IC) (for TLR3) (Fig. 1). When cells expressing TLR4/MD2 were stimulated with LPS, IL-8 mRNA was readily induced although these cells remained unresponsive to poly(IC). HEK 293 C6 cells transfected with TLR3 were unresponsive to LPS but were highly sensitive to the action of poly(IC) as indicated by the expression of the human ISG56 mRNA, a product known to be sensitive to dsRNA and both type I and type II IFNs (33). Interestingly, poly(IC) treatment of 293 cells expressing TLR3 resulted in only modest chemokine mRNA expression. This finding suggested that signaling from TLR3 might be unable to promote stabilization of these chemokine mRNAs.
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or LPS, IL-8 mRNA was stable over the entire incubation period. In contrast, the modest levels of IL-8 mRNA induced in response to poly(IC) disappeared rapidly indicating that poly(IC) acting through TLR3 was unable to promote the stability of this chemokine mRNA.
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, LPS, or poly(IC) for 2 h before addition of ActD. Individual cultures were harvested at the indicated times and used to determine expression levels for CXCL1 or KC mRNA (homologue of human GRO
) by Northern hybridization (Fig. 3A). Although both IL-1
and LPS could induce KC mRNA expression with prolonged expression, poly(IC) was a weak inducer, and in the presence of ActD, the message decayed rapidly. To examine the effects of each stimulus on KC mRNA stability independently of their role in stimulating transcription, we exploited the prior finding that TNF-
treatment can induce KC mRNA expression but cannot stabilize the message (31). H5V cells were stimulated with TNF-
for 2 h followed by the addition of ActD alone or in the presence of either IL-1
, LPS, or poly(IC) for additional times (Fig. 3B). As reported previously, TNF-
could stimulate KC mRNA expression but in the presence of ActD, it decayed rapidly, whereas IL-1
treatment prolonged the half-life considerably. Consistent with the findings previously presented, poly(IC) did not stabilize KC mRNA. Interestingly, although LPS was capable of stabilizing KC when also used as the inducer (Fig. 3A), it was relatively inactive when added in the presence of ActD (Fig. 3B).
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and LPS, acting through their corresponding TIRs, can modulate the stability of ARE-containing mRNAs. However, because these stimuli are also necessary to promote the transcriptional induction of IL-8 or KC mRNAs, we cannot assess message decay in their absence. To more directly test the ability of these receptors to modulate mRNA stability, we used an experimental system in which transcription of an ARE-containing reporter mRNA is regulated by a tetracycline responsive promoter. The 293 cells stably expressing the tetR-VP-16 fusion protein (293 tet-off) were transiently transfected with a plasmid containing the full-length mouse CXCL1 (KC) cDNA downstream of a TRE. The KC gene is a mouse chemokine gene closely related to IL-8 that also exhibits both instability and stabilization in response to IL-1
and LPS (20, 31). Following addition of the tetracycline analog Dox this unstable ARE-containing chemokine mRNA decays with a half life of between 60 and 90 min (Fig. 4, A and B). Treatment of the cells with IL-1
at the same time as Dox results in a significant increase in the half-life of KC mRNA (to 150 to 180 min). mRNA stability in this system can also be measured by comparing the amount of KC protein secreted from transfected cells before and after the addition of Dox (Fig. 4C). IL-1
stimulation resulted in a 2-fold increase in the amount of KC protein secreted from cells after termination of transcription by the addition of Dox.
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B and other signaling events (37). When 293 tet-off cells were cotransfected with the TRE regulated KC cDNA and plasmids encoding the genes for TLR4 and MD2, KC mRNA stability was strongly enhanced as indicated by increased KC mRNA half life and protein secretion (Fig. 4, AC). Consistent with the findings presented in Fig. 2, over-expression of TLR3 was not able to enhance mRNA stability. This did not reflect an inability of over-expressed TLR3 to stimulate cellular response as demonstrated by induction of luciferase activity controlled by the ISG56 promoter (Fig. 4D). Although both IL-1
stimulation and over-expression of TLR4/MD-2 could activate strong NF
B-driven luciferase expression, over-expression of TLR3 was able to promote only modest NF
B activation (Fig. 4E). The ability of IL-1
or over-expression of TLR4/MD2 to promote enhanced stability of KC mRNA was dependent upon the 3'UTR of KC mRNA because constructs in which the 3'UTR of the rabbit
-globin gene was substituted for the KC 3'UTR were highly stable and exhibited no sensitivity to stimulation (data not shown).
The ability of IL-1
/IL-1R1 and LPS/TLR4-MD2 but not polyIC/TLR3 to promote the enhanced stability of chemokine mRNAs suggests that the connection between TIR and mRNA stabilization uses only the MyD88-dependent pathway. In the case of LPS/TLR4-MD2, signaling for this pathway also requires the related adaptor protein Mal. In contrast, the MyD88-independent pathway requires the Trif adaptor protein for TLR3 and both Trif and its relative Tram in the case of TLR4-MD2 (22, 23, 27, 28, 36). As with TLR4/MD2, over-expression with these adaptor proteins has the capacity to initiate the signaling cascade even in the absence of receptor/ligand interaction. Using this strategy, we assessed the ability of the individual adaptor proteins to couple with the process of mRNA stabilization. Transient transfection of 293 tet-off cells with cDNAs encoding MyD88 or Mal was associated with enhanced stability of the cotransfected KC reporter mRNA (Fig. 5, A and B). As predicted, when either Trif or Tram proteins were over-expressed, KC mRNA stability was not different from vector-transfected cells (Fig. 5A). Using the more quantitative KC protein secretion assay, we observed that the ability of individual adaptor proteins to modulate mRNA stability was dose dependent; MyD88 was the most potent activator of mRNA stability followed by Mal, Trif, and Tram in that order. Both Trif and Tram were capable of promoting mRNA stability only at the highest level of plasmid transfection (2.5 µg/106 cells) indicating that they differ from MyD88 and Mal in this capacity by nearly two orders of magnitude. The inability of Trif to promote stabilization of KC mRNA did not reflect either inactive recombinant protein or poor expression (Fig. 5, D and E). The 293 tet-off cells transfected with Trif showed strong luciferase expression driven from both NF
B and ISG56 promoter constructs whereas IL-1
treatment or transfection with the MyD88 expression construct could only activate NF
B-dependent transcription (Fig. 5D). Furthermore, Western blot analysis using Abs to epitope tags (FLAG for MyD88, Mal, and Tram and HA for Trif) showed comparable expression for all four constructs (Fig. 5E).
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| Discussion |
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TLR3 provides recognition of dsRNA and host defense against infection by viruses that use dsRNA structures in their replication cycle (39, 40). Signaling from TLR3 leads to stimulation of type I IFN expression through the activation of IFN regulatory factor 3, a distinguishing hallmark of the MyD88-independent pathway (24, 26, 41). TLR3 activation is also capable of activating NF
B, though the magnitude and temporal pattern of this response are diminished and delayed, respectively, as compared with NF
B activation through either IL-1R1 or TLR4 (27, 28). This modest activation of NF
B via TLR3 appears to be insufficient to promote the transcription of cytokine and chemokine genes as evidence by the relatively poor induction of IL-8 or KC mRNA expression demonstrated in the experiments shown in Figs. 13. Furthermore, the inability to stabilize these mRNAs will contribute to their very limited accumulation as well. It is noteworthy, however, that poly(IC) is known to be a potent stimulus of cytokine gene expression in multiple cell types (39). This may reflect, in part, the existence of non-TLR3-dependent responses to poly(IC), as evidenced by residual dsRNA sensitivity in mice deficient for the TLR3 gene (40). Little is known, however, regarding the structure and function of such events.
IL-1R1 and TLR3 represent the MyD88-dependent and -independent pathways and the signaling from each depends upon MyD88 and Trif, respectively (3, 27). In contrast TLR4 uses both the MyD88-dependent and -independent pathways and requires in addition to MyD88 and Trif, Mal (for MyD88-dependent), and Tram (for MyD88-independent) (22, 23). The results of experiments examining the activity of individual TIR adaptor proteins in over-expression studies support the hypothesis that the MyD88-dependent and -independent signaling pathways are quantitatively distinct with respect to mRNA stabilization. MyD88 and/or Mal are both potent stimuli of enhanced RNA stability whereas Trif and Tram do not efficiently modulate mRNA decay. Though Trif and Tram also exhibit some capacity to stimulate this pathway when expressed at high levels, the quantitative difference between MyD88 or Mal and Trif or Tram is between 10- and 100-fold (2.5 µg of Trif plasmid is required to promote stabilization comparable to that seen with 0.025 µg of MyD88 plasmid). Thus although Trif and Tram exhibit potential to couple with the process of mRNA stabilization, their activation through ligand/receptor stimulation is apparently unable to achieve the required level under physiologic circumstances.
The signaling events downstream from the IL-1R1 leading to activation of NF
B are understood in some detail (29, 42, 43, 44, 45, 46, 47, 48). MyD88 assembles a complex composed of IL-1R-associated kinase (IRAK), IRAK4, and TRAF6 at the receptor. Following dissociation from the receptor, this complex relocates to the plasma membrane and recruits TAB1, TAB2 and TAK1. This complex then dissociates from the membrane and TAK1 is activated in the cytosol via a process that appears to involve ubiquitin ligase activity and phosphorylation of TAK1. Activated TAK1 is believed to be responsible for the activation of the I
B kinase complex and the subsequent phosphorylation, ubiquitination, and degradation of I
Bs with the attendant release and nuclear translocation of free NF
B. TAK1 is also linked with activation of downstream stress-activated kinases including p38 via intermediate activation of MAPK kinases MKK6 or MKK3 and these events have been reported to couple with the stabilization of chemokine and cytokine mRNAs (49, 50). The linkage of the TIR family receptors to mRNA stability appears to involve this MyD88-dependent pathway. TLR3, acting through Trif and TRAF6 also results in the activation of TAK1 via assembly of a cytoplasmic complex that does not depend upon MyD88 or IRAK (51) (X. Li, unpublished observation). This complex can activate NF
B but results in very modest cytokine expression and this may reflect, at least in part, its relative inefficiency to couple with the mRNA stabilization pathway. In this regard, although multiple ligand receptor pairs are known to activate one or more of the MAPK modules including p38, not all couple effectively with the stabilization of ARE-containing mRNAs. For example, TNF-
, although a potent activator of p38, does not promote stabilization of either IL-8 or KC mRNA (31, 32, 52). Apparently, p38 activation is necessary but not sufficient for mRNA stabilization. Alternatively, different stimuli may activate distinct isoforms or cellular pools of p38, providing the means for stimulus selectivity in modulation of mRNA decay.
| Footnotes |
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1 This work was supported by U.S. Public Health Service Grants CA39621 and CA62220. ![]()
2 Address correspondence and reprint requests to Dr. Thomas A. Hamilton, Department of Immunology, Cleveland Clinic Foundation, NB30, 9500 Euclid Avenue, Cleveland, OH 44195. E-mail address: hamiltt{at}ccf.org ![]()
3 Abbreviations used in this paper: TIR, Toll IL-1R; ARE, adenosine and uridine-rich element; UTR, untranslated region; Mal, MyD88 adaptor-like protein; Trif, Toll receptor IFN-inducing factor; Tram, Trif-related adaptor molecule; ActD, actinomycin D; Dox, doxycycline; IRAK, IL-1R-associated kinase; HA, hemagglutinin; TRE, tetracycline responsive sequence element. ![]()
Received for publication February 4, 2004. Accepted for publication June 10, 2004.
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J. Hartupee, C. Liu, M. Novotny, D. Sun, X. Li, and T. A. Hamilton IL-17 Signaling for mRNA Stabilization Does Not Require TNF Receptor-Associated Factor 6 J. Immunol., February 1, 2009; 182(3): 1660 - 1666. [Abstract] [Full Text] [PDF] |
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S. Datta, R. Biswas, M. Novotny, P. G. Pavicic Jr., T. Herjan, P. Mandal, and T. A. Hamilton Tristetraprolin Regulates CXCL1 (KC) mRNA Stability J. Immunol., February 15, 2008; 180(4): 2545 - 2552. [Abstract] [Full Text] [PDF] |
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J. Hartupee, C. Liu, M. Novotny, X. Li, and T. Hamilton IL-17 Enhances Chemokine Gene Expression through mRNA Stabilization J. Immunol., September 15, 2007; 179(6): 4135 - 4141. [Abstract] [Full Text] [PDF] |
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M. Novotny, S. Datta, R. Biswas, and T. Hamilton Functionally Independent AU-rich Sequence Motifs Regulate KC (CXCL1) mRNA J. Biol. Chem., August 26, 2005; 280(34): 30166 - 30174. [Abstract] [Full Text] [PDF] |
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