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* Department of Cancer Immunology and AIDS, Dana-Farber Cancer Institute, and Departments of
Pathology and
Neurology, Harvard Medical School, Boston, MA 02115
| Abstract |
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| Introduction |
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Type 1 diabetes is particularly relevant for addressing this general question because a wealth of information is available on MHC genetics for the human disease as well as the nonobese diabetic (NOD)
4 mouse model. The MHC is the most important susceptibility locus for human type 1 diabetes and the disease-associated human HLA-DQ8 and DQ2 molecules share significant structural similarities with the I-Ag7 molecule expressed in NOD mice (5, 6, 7, 8, 9, 10). A key polymorphic residue (
57) lacks a negative charge in both DQ8 and I-Ag7 and therefore does not form a salt bridge with an arginine from the
-chain (
76) (5, 6). The positively charged arginine is therefore exposed in the P9 pocket of DQ8 and I-Ag7, resulting in a pocket with a preference for acidic peptide side chains. The structural similarities between DQ8 and I-Ag7 suggest that similar Ag presentation events are relevant in the human disease and the NOD mouse model (8, 9, 10). Other MHC class II alleles provide dominant protection from type 1 diabetes in humans and NOD mice. In humans, the DR2/DQ6 haplotype as well as several other MHC class II haplotypes significantly reduce the risk for type 1 diabetes (5, 11). In NOD mice, I-E molecules are not expressed due to a deletion in the E
promoter and transgenic expression of the E
gene results in protection from the disease (12, 13, 14, 15). Protective MHC class II molecules could affect thymic selection of relevant T cell populations and/or modulate the immune response in the periphery.
Investigation of the mechanisms by which MHC molecules confer susceptibility or protection from autoimmunity thus requires analysis of CD4 T cell populations in the thymus and the target organ. Tetrameric forms of MHC class II/peptide complexes may be useful for this purpose because labeling does not depend on a particular T cell effector function. Tetramers of murine MHC class II/peptide complexes have been generated by covalently attaching the peptide of interest to the N terminus of the MHC class II
-chain, but this approach requires the generation of a new transfectant/recombinant virus for every peptide of interest (16, 17, 18, 19). Investigation of T cell populations in a spontaneous model of autoimmunity requires analysis of a panel of candidate peptides and we have developed an approach based on the cellular peptide exchange mechanism that permits a series of tetramers to be generated from a single MHC class II/class II-associated invariant chain peptide (CLIP) precursor. We initially developed this technique with human MHC class II molecules and were able to visualize virus-specific CD4 T cells in peripheral blood without prior in vitro culture (20). We have now examined whether this approach is applicable to the generation of tetrameric forms of murine MHC class II/peptide complexes for ex vivo characterization of CD4 T cells in a murine model of autoimmunity.
| Materials and Methods |
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To express soluble I-Ag7, the transmembrane and cytoplasmic segments of the I-A
and I-A
chains were replaced with leucine zipper dimerization domains from the transcription factors Fos and Jun, respectively, as previously described (21). For the purpose of the present work, several changes were made to the original constructs. To permit biotinylation of I-Ag7 molecules, a recognition site for the Escherichia coli BirA enzyme (GLNDIFEAQKIEWHE, single amino acid code; Ref.22) was attached to the C terminus of the I-A
-Fos chain through a flexible linker (C terminus of Fos and the six amino acid linker: FILAAH-GGSGGS). The sequence representing the murine CLIP peptide was tethered to the N terminus of the mature I-A
chain through a linker with a thrombin cleavage site, permitting replacement of the CLIP peptide following purification of the protein. The protein sequence encoded by the 5' coding segment of the construct was: MALQIPSLLLSAAVVVLMVLSSPGTEG (signal peptide)-GDSGT (signal peptide cleavage site and KpnI restriction site)-PVSQMRMATPLLMRP (CLIP peptide)-GGGGSLVPRGSGSGSGS (linker with thrombin cleavage site and BamHI restriction site)-GDSER (N terminus of mature I-A
chain). These I-A
and I-A
constructs were cloned into the BglII-EcoRI and BamHI sites of the pAcDB3 vector (BD PharMingen, San Diego, CA), respectively, under the control of the two p10 promoters located in this vector. The recombinant baculovirus that was generated with this construct was used to express the protein in High Five cells. Cells were cultured in serum-free medium (Express Five SFM; Invitrogen, Carlsbad, CA) at a density of 1 x 106/ml with the recombinant virus at a multiplicity of infection of 5. Supernatants were harvested 65 h following infection and the protein was purified from concentrated supernatants by affinity chromatography using mAb 10-2.16, as previously reported (21). The typical yield was
1.82.5 mg/L of culture.
Biotinylation, thrombin cleavage, and peptide exchange
Purified I-Ag7 molecules were biotinylated using a 1:20 molar ratio of BirA to I-Ag7 in a buffer containing 50 µM biotin, 10 mM ATP, 10 mM magnesium acetate, 50 mM Bicine, and 1x protease inhibitor mixture (Sigma-Aldrich, St. Louis, MO) at pH 8.3. The final I-Ag7 concentration was adjusted to 2.0
2.5 mg/ml with 10 mM Tris (pH 8.0) and reactions were incubated for 2 hours at 30°C. Free biotin was then removed using a PD-10 size exclusion column (Amersham Pharmacia Biotech, Piscataway, NJ) equilibrated with 10 mM Tris (pH 8.0). Biotinylation was confirmed by electrophoresis on 8% native polyacrylamide gels, and dimers, trimers, and tetramers could be visualized at different molar ratios of streptavidin (Pierce, Rockford, IL) and I-Ag7.
Prior to the peptide exchange reaction, the linker between the CLIP peptide and the I-A
chain was cleaved with thrombin to permit release of the CLIP peptide. Twenty units of thrombin (Novagen, Madison, WI) were used per milligram of I-Ag7. The I-Ag7 concentration was 12 mg/ml and reactions were incubated at room temperature for 2 h in 10 mM Tris (pH 8.0); thrombin cleavage was confirmed by SDS-PAGE based on a shift in the molecular weight of the I-A
chain.
Peptide exchange was performed using peptides synthesized with a DNP affinity tag. The DNP group was attached during the synthesis to the N terminus of peptides via an aminohexanoic acid (Ahx) linker (Jerini, Berlin, Germany); all peptides were HPLC purified and analyzed by mass spectrometry. Peptide exchange reactions were carried out with 3.3 µM I-Ag7/CLIP and 50 µM of the respective DNP-labeled peptide in a buffer containing 50 mM sodium phosphate (pH 6.0), 100 mM NaCl, 1 mM EDTA, and 1x protease inhibitor mixture (Sigma-Aldrich). The reactions were incubated overnight at room temperature and then concentrated by ultrafiltration. I-Ag7/CLIP concentration, reaction temperature, and pH were chosen based on preliminary experiments designed to minimize aggregation of empty I-Ag7 molecules created by CLIP dissociation. I-Ag7 molecules were then separated from unbound peptide using a Superose 12 HPLC gel filtration column (Amersham Pharmacia Biotech) using PBS as running buffer at a flow rate of 0.8 ml/min. The peak representing I-Ag7 molecules was collected and injected onto an anti-DNP HPLC affinity column. This column was generated by covalently cross-linking 10 mg of anti-DNP-1 Ab (Biotrend Chemikalien, Cologne, Germany) to a 4.6 mm x 50 mm protein G column on POROS 20 XL medium (Applied Biosystems, Foster City, CA). I-Ag7 molecules with bound DNP-peptide were eluted from the column using 50 mM 3-(cyclohexylamino)-1-propane sulfonic acid (pH 11.5) and eluates were neutralized by addition of 1 M phosphate (pH 6.0). Biotinylated, peptide-loaded I-Ag7 molecules were concentrated by ultrafiltration (Centricon 2-ml concentrator; Millipore, Bedford, MA) and the buffer was simultaneously exchanged to 10 mM Tris (pH 8.0). Biotinylated I-Ag7/peptide complexes were frozen on dry ice and stored in small aliquots at -80°C.
Labeling of T cells with MHC class II tetramers and enrichment of tetramer-positive cells with anti-PE microbeads
For tetramer formation, biotinylated I-Ag7/peptide complexes were incubated with R-PE-labeled streptavidin (Molecular Probes, Eugene, OR) for at least 1 h on ice at a 4:1 molar ratio of I-Ag7 to streptavidin and a final I-Ag7 concentration of 0.1 mg/ml unless described otherwise. Four-color FACS analysis was performed with the PE-labeled tetramer and allophycocyanin-labeled anti-CD4, as well as PerCP-labeled anti-CD3 (for cells isolated from lymph nodes and spleen) or PerCP-labeled anti-CD8 (for cells isolated from thymus; all Abs were obtained from BD PharMingen). Apoptotic cells were excluded using Alexa 488-labeled annexin V.
Magnetic enrichment of tetramer-labeled cells was used to confirm the presence of cell populations present at low frequencies. Cells were stained with tetramers (typically at 10 µg/ml) in RPMI 1640, 10% FCS for 30 min at room temperature with gentle rocking; labeled Abs were then added and the reaction was kept on ice for another 20 min. Cells were then washed twice with PBS/1% FCS, cell pellets were resuspended in 80100 µl of PBS/1% FCS and 15 µl of the anti-PE microbeads (Miltenyi Biotec, Auburn, CA) were added to each sample. Following incubation for 20 min in the refrigerator, unbound beads were washed away with PBS/1% FCS and cells were resuspended in 1 ml of PBS/1% FCS. At this point, each sample was split and 900 µl were used for magnetic enrichment while 100 µl were kept as a nonenriched, but otherwise identically treated, sample. For enrichment, 900 µl of the cell suspension were loaded onto the MS column (Miltenyi Biotec), the column was washed three times, and cells were eluted in 2 ml of annexin-binding buffer (10 mM HEPES, 140 mM NaCl, 2.5 mM CaCl2 (pH 7.4). Annexin V Alexa 488 conjugate (2 µl; Molecular Probes) was added and cells were incubated for 15 min at room temperature and then placed on ice until FACS analysis. Cells that were not magnetically enriched were resuspended in 200 µl of the diluted annexin V solution (1/1000) and treated like the magnetically enriched cells.
FACS analysis was performed using a FACSCalibur (BD Biosciences, San Diego, CA) and the CellQuest software (BD Biosciences). Lymphocytes were gated based on forward and side scatter and CD3/CD4, CD4/CD8, or CD4 expression as indicated in the figure legends.
Enrichment of CD4 single-positive thymocytes
CD4 single-positive thymocytes were enriched from single cell suspensions by negative selection with a mixture of mAbs to CD8, CD11b (Mac-1), CD45R (B220), an erythroid marker (TER119) and a myeloid differentiation Ag (Gr-1) (SpinSep murine CD4 T cell enrichment kit; StemCell Technologies, Vancouver, British Columbia, Canada). The cell suspension (at a density of 28 x 107 cells/ml) was incubated with the Ab mixture for 20 min in the refrigerator (410°C). Free Abs were washed away with PBS/2% FCS, and SpinSep Dense Particles (StemCell Technologies) which bind to Ab-labeled cells were then added. Following incubation for 20 min on ice, cells bound to the particles were removed by centrifugation through the SpinSep Density Medium and nonlabeled cells were recovered from the interface, washed, and resuspended in RPMI 1640, 10% FCS for tetramer staining.
Tetramer labeling of T cells from pancreatic lymph nodes and spleen
Pancreatic lymph nodes were dissected and single cell suspensions were prepared. Cells were washed twice with PBS and then resuspended in RPMI 1640, 10% FCS for staining. For splenocytes, the single cell suspension was first washed twice with PBS and then resuspended in red cell lysis buffer (Sigma-Aldrich). Following an incubation for 1015 min at room temperature, cells were washed twice with PBS, and resuspended in RPMI 1640, 10% FCS for staining. Magnetic enrichment of tetramer-labeled cells was performed as described above for thymocytes.
Analysis of CD4 T cells from mice immunized with peptides
NOD mice or B10.H-2g7 mice (both from Taconic Farms, Germantown, NY) were immunized s.c. with peptide emulsified in CFA (1:1 emulsion of CFA and peptide at 4 mg/ml). Popliteal lymph nodes were isolated 10 days following immunization and single cell suspensions were prepared. Cells were washed twice with PBS, resuspended in RPMI 1640 with 10% FCS, and subjected to tetramer staining. The remaining cells were cultured for 34 days at a density of 5 x 106/ml in the presence of the respective peptide (100 nM) in AIM-V medium (Invitrogen) supplemented with 2 mM L-glutamine, 55 µM 2-ME. Viable cells were purified by Ficoll density gradient centrifugation prior to tetramer labeling.
Peptide binding assays
Unlabeled peptides were used as competitors for binding of a biotinylated reference peptide to thrombin-cleaved I-Ag7/CLIP (21). Thrombin-cleaved I-Ag7 molecules (200 nM) were incubated with biotinylated mouse transferrin peptide (1 µM) in the presence of nonbiotinylated competitor peptides (40 nM to 30 µM) overnight at 37°C in 50 mM sodium phosphate (pH 6.0), 100 mM sodium chloride, 1 mM EDTA, 100 µg/ml BSA, and 1x protease inhibitor mixture (Sigma-Aldrich). I-Ag7 bound biotinylated peptide was then quantitated with europium-labeled streptavidin following capture of I-Ag7 with mAb 10-2.16. For that purpose, 96-well plates (Wallac MaxiSorp F96 Low Fluorescence, Turku, Finland) were coated overnight at 4°C with 10-2.16 mAb (50 µl/well of 4 µg/ml) in sodium bicarbonate buffer (pH 9.6) and then washed four times with 50 mM Tris, 150 mM sodium chloride, 20 µM EDTA, 0.05% Tween 20 to remove unbound Ab. Nonspecific binding sites were then blocked at room temperature for 2 h using 150 µl/well assay buffer (Wallac). Plates were washed twice and the reaction samples (diluted 1/1 in assay buffer) were added to the plates (100 µl/well). Following an incubation for 2 h at room temperature, plates were washed four times and 100 µl of europium-labeled streptavidin (Wallac) was added to each well (1/2000 in 50 mM Tris, 150 mM sodium chloride, 20 µM EDTA) for detection of the I-Ag7 bound biotinylated peptide. The plates were incubated for another hour and washed six times. One-hundred microliters of enhancement solution (Wallac) was then added to each well and the signal was quantitated in a fluorescence plate reader (Delfia Fluorometer; Wallac) following 30 min of incubation at room temperature.
| Results |
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We previously demonstrated that soluble I-Ag7 heterodimers could be expressed in insect cells using DNA constructs in which the transmembrane and cytoplasmic domains were replaced with leucine zipper dimerization domains from the transcription factors Fos and Jun. These soluble I-Ag7 molecules bound peptides known to represent I-Ag7 restricted T cell epitopes, and several I-Ag7/peptide complexes displayed a long half-life in the absence of detergent, suggesting that tetramers generated by peptide loading would be stable. The invariant chain-derived CLIP peptide bound to I-Ag7 at a neutral pH but rapidly dissociated (t1/2 of <5 min) at pH 5.2 (21). Because "empty" MHC class II molecules have a tendency to aggregate we reasoned that the CLIP peptide could protect the hydrophobic binding site at a neutral pH during biosynthesis and be effectively exchanged with any peptide of interest at the acidic pH characteristic for the endosomal peptide-loading compartment. We expressed I-Ag7/CLIP complexes as inactive precursors by attaching CLIP to the N terminus of the I-A
chain through a linker with a thrombin cleavage site, and converted this precursor to the peptide-receptive form by linker cleavage. In APCs, the MHC class II/CLIP complex represents the natural substrate for a DM-accelerated peptide exchange reaction and is generated by proteolytic cleavage of the MHC class II bound invariant chain in the endosomal/lysosomal compartment (23, 24, 25, 26).
I-Ag7/CLIP complexes were affinity purified from the supernatant of insect cells infected with a recombinant baculovirus, with a typical yield of 1.82.5 mg/L of culture. Cleavage of the linker with thrombin was visualized by SDS-PAGE (Fig. 1) and peptide binding experiments confirmed that the CLIP peptide could be released (Fig. 2). New I-Ag7/peptide complexes were generated by exchange of CLIP with peptides synthesized with an N-terminal DNP affinity tag. Two purification steps were used to isolate defined I-Ag7/peptide complexes: I-Ag7 molecules were first separated from free peptide by HPLC gel filtration chromatography (Fig. 1B), followed by affinity purification of the complex using an anti-DNP HPLC column (Fig. 1C).
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We generated tetramers with two GAD peptides as well as several peptides representing mimics for BDC-2.5 and other islet-reactive T cell clones. The BDC-13 peptide was identical to the BDC-11 peptide, except that an alanine was added to the N and C terminus because flanking residues can stabilize the MHC/peptide/TCR interaction (35). In the BDC-11 W
R peptide, a critical TCR contact residue of the BDC-11 peptide was changed from tryptophan to arginine. The BDC-Osa tetramer was generated with a different mimic peptide that also stimulated the BDC-2.5 and other islet-specific T cell clones. In addition, we generated several control tetramers in order to probe specificity of tetramer labeling. These controls included peptides from OVA (residues 323339), HIV p24 (p24, residues 3346) and myelin oligodendrocyte glycoprotein (MOG, residues 120) (Table I); the MOG and HIV peptides were identified using peptide binding experiments, while the OVA peptide was previously shown to bind to I-Ag7 (36). Tetramers could be generated with all peptides that had an IC50 of <30 µM in the competition assay (Fig. 2), indicating that peptides with a wide range of affinities were suitable. The insulin B chain (9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23) peptide had a very low affinity for I-Ag7 (IC50 of >30 µM) and rapidly dissociated from I-Ag7. The complex could be generated by performing the purification steps at 4°C, but was not stable; generation of this tetramer by peptide loading would therefore require modification of peptide anchor residue(s) that increase the affinity of binding to I-Ag7. For all other peptides, efficient peptide loading was observed because >50% of I-Ag7 molecules were occupied with DNP-labeled peptides, based on the surface area of the peaks in the DNP affinity purification step representing bound and unbound protein, respectively (Fig. 1C, Table I). The final protein yields were excellent considering that two purification steps were performed following the peptide loading reaction (Table I, Fig. 1).
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We next determined whether such tetramers were suitable for ex vivo analysis of murine CD4 T cell populations. To examine these cell populations independent of the autoimmune process in NOD mice, we first immunized B10.H-2g7 mice with the GAD (206220) or BDC-11 peptides and labeled cells from draining lymph nodes 10 days following immunization, without prior in vitro culture (Fig. 4). The GAD (206220) tetramer labeled a substantial population of CD4 T cells (0.65%) from lymph nodes of GAD (206220) immunized mice, while background labeling with the CLIP tetramer was low (0.01%). The tetramer-positive population was highly enriched by use of anti-PE microbeads prior to FACS analysis (18.89% of CD4 T cells). A large population was present in draining lymph nodes of mice immunized with the BDC-11 peptide (1.78% tetramer-positive cells), and a striking enrichment to 77.65% of CD4 T cells was observed following isolation with anti-PE microbeads. The BDC-13 tetramer was used because it typically provided brighter staining than the BDC-11 tetramer; increasing peptide length to a 15 mer (BDC-15) did not result in a further increase in the intensity of staining (data not shown). Magnetic enrichment thus resulted in a clear delineation of tetramer-positive and -negative populations and enhanced detection of brightly labeled cells that may express TCRs with relatively high avidities for the respective I-Ag7/peptide complex.
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In newborn mice, very few T cells can be recovered from peripheral lymphoid structures. Only 0.14 x 106 CD4 T cells were isolated from the spleen of 2-day-old mice, compared to 16.75 x 106 from 6- to 8-wk-old C57BL/6 mice (37). Peripheral T cell numbers thus increase >100-fold during the first weeks of life and the initial development of insulitis at 34 wk of age in NOD mice may thus coincide with seeding of the periphery by thymic emigrants. Therefore, we examined whether the initial expansion of T cells labeled with the BDC-13 tetramer had occurred in the thymus (Fig. 6). Because the majority of thymocytes represent CD4+CD8+ T cells, we enriched CD4+CD8- cells by negative selection using a mixture of Abs to CD8 (depletion of CD8 single-positive and double-positive cells), B220, CD11b, and other markers. This enrichment procedure reduced background staining and also permitted analysis of larger numbers of CD4+CD8- cells. A distinct population of tetramer-positive CD4+CD8- T cells was only identified with the BDC-13 tetramer, but none of the control tetramers. Following enrichment, a brightly labeled discrete cell population was observed for the BDC-13 tetramer (0.74% of CD4 T cells), but none of the control tetramers (0.01 or less of CD4 T cells). Therefore, the enrichment procedure provided a clear distinction between the BDC-13 tetramer and the control tetramer, and also permitted clear separation of tetramer-positive and -negative cells. No T cell populations were detected in the thymus of NOD mice with the GAD (471490) tetramer or the MOG (120) control tetramer (data not shown).
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R) and found that this substitution greatly reduced the frequency of T cells that were detected compared to the BDC-11 tetramer (from 0.56 to 0.04% in samples enriched with anti-PE beads). Among this set of tetramers, the BDC-13 tetramer gave the brightest staining and labeled the largest cell population, while the staining intensity of the BDC-Osa tetramer was similar to BDC-11. These experiments thus demonstrate a high degree of specificity of tetramer labeling.
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| Discussion |
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and other cytokines, indicating that the cells were functional (17). Two groups have isolated a series of T cell clones reactive with an islet secretory granule Ag, with the T cells originating from islets of prediabetic NOD mice or spleen/lymph nodes of diabetic NOD mice (28, 30). These clones cause diabetes following transfer to NOD scid/scid mice, and the BDC-2.5 TCR has been used to generate TCR transgenic mice that develop spontaneous diabetes (32, 33, 34). The native autoantigen is not known, but analysis of combinatorial peptide libraries has provided a series of peptide mimetics that stimulate these T cell clones/hybridomas at low peptide concentrations (28, 31). Surprisingly, six of seven independent clones/hybridomas were stimulated by the same peptide mimetics, indicating that the majority of these clones have the same Ag specificity. This analysis also delineated key structural features of the peptides required for T cell activation. Within the nine amino acid core segment of these peptide mimetics, four positions were particularly important (P3, P5, P7, P8) while a number of substitutions were tolerated at the other five positions. The BDC-2.5 T cell clone was stimulated by two peptides in which only these four positions were conserved (P-W-RM at P3, P5, P7, and P8) while the other positions were distinct (VR-L-V-E and HI-I-A-D at P1, P2, P4, P6 and P9). The substitutions at three of these five positions were relatively conservative (leucine/isoleucine at P4, valine/alanine at P6, glutamic acid/aspartic acid at P9). The divergent positions are largely buried in the I-Ag7 binding groove (P1, P4, P6, and P9 pockets), and previous studies on other peptide mimetics have demonstrated that the MHC binding surface can be diverse (41). I-Ag7 tetramers with both mimetics labeled the CD4 T cell population in the thymus of NOD mice, indicating that the structural requirements for TCR recognition are similar for the thymic T cell population studied here and the T cell clones isolated by other research groups. Molecular characterization of the native target Ag will be required for tetramer-based analysis of this T cell population with the native peptide.
The identification of autoreactive CD4 T cells with tetramers of MHC class II/peptide complexes has represented a significant challenge, due to technical difficulties in the expression of MHC class II/peptide complexes and the relatively low frequency of autoreactive CD4 T cells. In addition, the avidity of TCR for self-peptide/MHC complexes may in general be lower than those for microbial peptide/MHC complexes due to thymic and peripheral tolerance mechanisms (42). Peptide mimetics may be useful for the detection of autoreactive CD4 T cells because peptides with the highest biological activity can be chosen from a large number of variants. This concept was elegantly illustrated by the use of the NRP-V7 peptide mimetic recognized by an islet-specific CD8 T cell population. A tetramer with this peptide could be used to predict the development of type 1 diabetes in NOD mice based on labeling of CD8 T cells from peripheral blood (43). T cells labeled with this tetramer were also detected in islets, starting at 7 wk of age and peaking at 1114 wk, at which time the frequency of these cells ranged from 1.61 to 36.8% of CD8 T cells in individual mice. The brightness of tetramer labeling and consequently the size of the detected cell population had been optimized based on single amino acid substitutions at position 7 of the peptide (W, A, or V) and the population labeled with the NRP-V7 tetramer was 4- to 5-fold larger than the one stained with the NRP-A7 tetramer. Recent work has demonstrated that the self-peptide recognized by these CD8 T cells is derived from the islet-specific glucose-6-phosphatase catalytic subunit-related protein (IGRP) and that tetramers loaded with the IGRP peptide label a CD8 T cell population in islets and blood of NOD mice that is similar in size to the population identified with the tetramer loaded with the NRP-V7 mimic peptide (44). Similarly, the BDC-13 tetramer used here yielded brighter staining and labeled a larger population of cells than the BDC-11 tetramer with the shorter peptide as well as the BDC-Osa tetramer. Therefore, it is possible that CD4 T cell populations could also be detected in the thymus for some of the other peptides investigated here, provided that the peptide sequences are optimized in such a fashion. A potential limitation of the peptide mimetic approach is that not all T cells labeled with such a tetramer may recognize the native peptide, and this issue can in part be addressed by use of two or more mimetics that stimulate the same T cell population.
MHC class II tetramers have been generated by covalent attachment of the peptide of interest to the N terminus of the
-chain, but this approach requires the generation of a new recombinant virus/transfectant for every peptide (19). Generation of tetramers from MHC class II/CLIP precursors offers several significant advantages: 1) many different tetramers can be generated from the same MHC class II/CLIP precursor, permitting investigation of a number of different candidate peptides. This aspect is critical because the key T cell epitopes are not known with certainty in any autoimmune disease, except for animal models where disease is induced by deliberate immunization with a single Ag or peptide; 2) peptide variants that increase the affinity to the MHC molecule or the TCR can be investigated. The length of the peptide can also be optimized, an aspect that may be significant for peptides that have the potential to bind to the MHC class II molecule in more than one register; 3) binding occurs at the acidic pH of the endosomal compartment, rather than the neutral pH of the endoplasmic reticulum. This aspect may be relevant in select cases where different binding registers of the same peptides are possible and where the protonation state of the peptide or the MHC molecule may determine the preferred binding mode. Affinity purification of the final complex may not always be necessary, due to the high peptide loading efficiencies observed here. Nevertheless, this step can be used to confirm appropriate loading and to exclude the possibility that staining is due to a contaminating peptide. The peptide exchange procedure may also permit tetramers of DQ8/peptide complexes to be generated for the analysis of islet-specific T cells in the human disease. Empty DQ8 molecules have a strong tendency to aggregate (our unpublished data), indicating that protection of the peptide binding site by an exchangeable, low affinity peptide will be required for the generation of DQ8 tetramers by peptide loading.
These findings have important implications for thymic T cell repertoire development, in particular in terms of MHC-linked susceptibility to autoimmunity. The surprisingly high frequency of CD4 T cells identified with I-Ag7/BDC tetramers demonstrates that the T cell repertoire in NOD mice can be highly biased, apparently because positive selection of this population is efficient while negative selection is either inefficient or largely absent. An important role of thymic repertoire selection in susceptibility to autoimmunity could explain the exquisite allele specificity observed for disease-associated vs nonassociated MHC class II alleles. A key aspect of MHC-associated susceptibility to type 1 diabetes is the presence of a nonaspartic acid residue at position 57 of both DQ and I-A
chains (5, 6). Based on these data, we propose that MHC class II molecules which confer susceptibility to type 1 diabetes act at two distinct sites: initially in the thymus by promoting efficient positive selection of potentially pathogenic T cell populations and later in pancreatic lymph nodes and islets by presenting islet-derived peptides that induce differentiation of these T cells into effector cells that initiate and propagate the inflammatory process. The stringent structural requirements for peptide presentation implied by the genetic data could thus be explained by the requirement for presentation of different peptides in the thymus and the periphery to the same T cell population. This two-stage model of MHC-linked susceptibility could thus explain the observation that particular structural properties of I-Ag7 and DQ8 are tied to disease susceptibility. In most other DQ and I-A molecules, the aspartic acid residue present at
57 forms a salt bridge with arginine
76, but this salt-bridge is not formed in DQ8 and I-Ag7. Arginine
76 is instead available to form a salt bridge with acidic peptide side chains bound in the P9 pocket (3, 8, 9, 10). The
57 polymorphism may thus permit presentation of positively selecting peptides (with an acidic residue at P9) and simultaneously prevent binding of peptides that could induce negative selection of relevant T cell populations (peptides with side chains that cannot be accommodated in the P9 pocket). Experiments in transgenic NOD mice support this hypothesis because mice that coexpressed a mutant I-Ag7
-chain with substitutions of residues
56 and 57 of the P9 pocket or other I-A molecules were protected from the disease (14, 45, 47).
Several other lines of evidence indicate that thymic repertoire selection is critical in the development of type 1 diabetes. In humans, susceptibility to the disease is influenced by the promoter region of the insulin gene (IDDM2 locus) and protective alleles are associated with higher levels of insulin mRNA in the thymus (48, 49). In NOD mice, a defect in thymic negative selection has been reported. Kishimoto and Sprent (50) demonstrated that negative selection in NOD mice was impaired for a population of semimature thymocytes in the medulla with a CD4+CD8-HSAhigh phenotype (50). Reduced levels of apoptosis were observed for this cell population in vitro following stimulation with anti-CD3 or anti-CD3 plus anti-CD28 or in vivo following injection of the superantigen staphylococcus enterotoxin B. This defect in apoptosis was not observed in NOR, B6.H-2g7 or (B6.H-2g7 x NOD)F1 mice. Lesage et al. (51) demonstrated a T cell intrinsic defect in thymic-negative selection in NOD mice based on a transgenic model in which a membrane-bound form of hen egg lysozyme (HEL) was expressed in islets, along with a HEL-specific TCR. Negative selection of HEL-specific T cells was defective on the NOD but not the B10 background, and experiments in bone marrow chimeras demonstrated that the defect was T cell intrinsic.
A failure of negative selection has also been implicated for the immunodominant T cell epitope of myelin proteolipid protein (PLP, residues 139151) in SJL mice. Immunization with this peptide induces a severe, chronic form of experimental autoimmune encephalomyelitis. Only an alternatively spliced form that did not include the exon encoding the PLP (139151) epitope was detected in the thymus, while both splicing variants were expressed in the target organ (52, 53). This failure of negative selection is evidenced by the fact that PLP (139151)-specific T cells can be readily detected in nonimmunized mice in a T cell proliferation assay (52). It is possible that the same mechanism is responsible for the observation that T cells recognized by I-Ag7/BDC tetramers are not deleted in the thymus. MHC class II molecules that confer susceptibility to an autoimmune disease may thus set the stage for disease development by permitting the emergence of potentially pathogenic T cell populations from the thymus.
| Footnotes |
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2 M.-H.J. and N.P.S. contributed equally to this paper. ![]()
3 Address correspondence and reprint requests to Dr. Kai W. Wucherpfennig, Dana-Farber Cancer Institute, Room D1410, 44 Binney Street, Boston, MA 02115. E-mail address: Kai_Wucherpfennig{at}dfci.harvard.edu ![]()
4 Abbreviations used in this paper: NOD, nonobese diabetic; CLIP, class II-associated invariant chain peptide; MOG, myelin oligodendrocyte glycoprotein; GAD, glutamic acid decarboxylase; HEL, hen egg lysozyme; PLP, proteolipid protein. ![]()
Received for publication June 12, 2003. Accepted for publication August 13, 2003.
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