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Department of Medicine, Division of Medical Oncology, Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA 19107
| Abstract |
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gene
segments are greatly overexpressed. In this study, we investigate the
rearrangement of the TCR-V
as well as the junctional diversity in T
cells infiltrating melanoma metastases following treatment with DNP
vaccine. In 19 of 26 control specimens, V-D-J length analysis showed
the expected polyclonal patterns. In contrast, postvaccine tumors from
9 of 10 patients showed dominant peaks of V-D-J junction size in one or
more V
families. Dominant peaks were seen most frequently in six
V
families (V
7, 12, 13, 14, 16, and 23) and were never seen in
seven others. Further analysis of the oligoclonal V
products showed
dominant peaks in the J region as well. Of particular interest was the
finding that V
and J
peaks were similar in inflamed metastases
obtained at different times or from different sites from the same
patient. Although 6 of 10 patients expressed HLA-A1, there was no
common pattern of TCR rearrangements among them. Finally, the amplified
PCR products from seven of these specimens were cloned and sequenced
and the amino acid sequence of the complementarity-determining
region 3 was deduced. In six of seven specimens, the same
complementarity-determining region 3 sequence was repeated in at least
two clones and in five of seven in at least three clones. Our study
indicates that DNP vaccine induces the expansion of particular T cell
clones that may be agents of its antitumor
effects. | Introduction |
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A number of reports have investigated modifications of the T cell
repertoire in normal subjects and in various disease states, including
autoimmune diseases, bone marrow and organ transplantation, and cancers
(2, 3, 4, 5, 6). Büdinger et al. (7) showed
preferential usage of TCR-V
17 by peripheral and cutaneous T cells
in patients with nickel-induced contact dermatitis. Kuwana et al.
(8) showed highly restricted TCR-V
usage by
autoreactive human T cell clones specific for DNA topoisomerase I in
patients with systemic sclerosis. Nakajima et al. (9)
reported accumulation of lesion-specific clonal TCR bands in the
intestinal lesions of patients with Crohns disease by means of
single-strand conformational polymorphism. Tanaka et al.
(10) detected oligoclonal accumulation of T cells in
inflamed skin areas of patients with atopic dermatitis, but not in
normal skin. The T cells infiltrating tumor sites, either spontaneously
or in response to treatment, have stimulated interest because they may
reflect an in situ immune reaction directed to the malignant cells that
is difficult to study by other techniques (2, 11).
Our group has been conducting clinical trials of a human cancer vaccine consisting of autologous tumor cells modified with the hapten, dinitrophenyl (DNP)3 (12, 13, 14). The rationale for this approach is the well-established observation that immunization with a hapten-modified protein can induce an immune response to the unmodified, natural protein even when that protein is a normal self-Ag. Thus, Weigle (15) observed that rabbits immunized with hapten-modified thyroglobulin developed Ab to natural thyroglobulin and subsequently autoimmune thyroiditis. Using a different approach to the same end, Neurath et al. (16) induced autoimmune colitis in mice by a single application of the hapten trinitrophenyl to the rectal mucosa.
We have reported that treatment of melanoma patients with the
autologous DNP vaccine induces clinically evident inflammatory
responses in metastatic sites (12). Biopsy of these
inflamed tumors showed intense infiltration with T lymphocytes,
predominantly CD8+. RT-PCR-based studies
suggested that the infiltrating T cells produced IFN-
in situ
(17). Finally, in some cases this response was followed by
tumor regression (14).
In a study of the TCR
-chain variable (TCR-V
) region repertoire
in tumor biopsy specimens of six melanoma patients who had been treated
with DNP vaccine, we found that certain TCR-V
families were
overrepresented in inflamed tumors as compared with matched PBL
(11). For example, V
14 was overexpressed in three of
six posttreatment metastases studied and accounted for 100% of the T
cells in one of them. Molecular analysis of length and sequence
composition of the complementarity-determining region 3
(CDR3) region and nucleotide sequencing of V
14 transcripts in two of
these samples demonstrated several T cell clones that were not
detectable in pretreatment samples.
In this study, we present a more extensive analysis of the TCR-V
rearrangements in melanoma metastases. The sample size has been
expanded to more closely examine the differences between postvaccine
metastases and control materials. Moreover, we have studied all of the
samples by a more sensitive and specific technique, determination of
the size distributions of the V-D-J junctional regions, which detects
oligoclonality in a V
whether or not that family is
overrepresented.
| Materials and Methods |
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The following specimens were studied: 1) melanoma metastases that developed inflammation following treatment of the patients with DNP vaccine (n = 10); 2) matched PBL samples obtained from these patients at approximately the same time as tumor excision (n = 10); 3) metastatic tumors excised from some of these patients before vaccine treatment (n = 5); and 4) melanoma lymph node metastases from randomly selected patients who had not been given vaccine (n = 11).
Tumor tissues were excised, maintained at 4oC, and delivered to the laboratory within 48 h of excision. The tumors were processed as previously described (18). In brief, cells were obtained by enzymatic dissociation with collagenase and DNase, aliquoted, frozen in a controlled rate freezer, and stored in liquid nitrogen in a medium containing 2.5% human serum albumin and 10% DMSO until needed. PBL were separated from blood by density centrifugation and cryopreserved in the same manner. Autologous, DNP-modified vaccines were prepared as previously described (14). In brief, cryopreserved tumor cell suspensions were thawed, irradiated (2500 cGy), and then modified with DNP by incubation with dinitrofluorobenzene (19). The haptenized cells were mixed with bacillus Calmette-Guérin and injected intradermally. All clinical protocols were approved by the Institutional Review Board of Thomas Jefferson University (Philadelphia, PA).
PCR and TCR-V
analysis
Tumor cell suspensions or PBL were thawed and total cellular RNA
was extracted using TRIzol according to the method of Chomczynski and
Sacchi (20). Subsequently, 510 µg of total cellular
RNA was reverse transcribed using oligo(dT), and cDNA synthesis was
performed as recommended (Life Technologies, Gaithersburg, MD).
Amplification was conducted in 50 µl of reaction mixture containing
200 ng of cDNA, 1.5 mM magnesium chloride, 200 µM of each dNTP, 50
pmol of one of the 24 V
primers and a C
primer, and 0.625 U of
Taq polymerase (AmpliTaq Gold; PerkinElmer, Foster City,
CA). The sequences of the V
primers as well as the C
primers used
are listed in the study by Wei et al. (21). The PCR
conditions consisted of an initial step of denaturation at
94oC for 10 min followed by 35 cycles of
94oC for 30 s, 60oC
for 30 s, 72oC for 1 min, and a final
extension of 10 min at 72oC in a GeneAmp PCR
System 9700 thermal cycler (PerkinElmer). For each of the 24 V
-C
PCR, a negative control in the absence of cDNA was included.
-Actin
served as a standard to normalize for the quantity of mRNA subjected to
PCR in the various samples. The PCR products of each of the 24
V
-C
reaction were separated by electrophoresis on 1.5% agarose
gel and the sizes of the PCR products were determined; a 123-bp DNA
ladder was used to check for fragments of the correct size.
Primer extension in runoff reactions
The 24 V
-C
reaction products of the 35 PCR cycles were
subjected to one to three cycles of runoff reactions with C
or J
region primers labeled at the 5' end with the Joe or FAM fluorophores
according to the manufactures protocols (PerkinElmer). For this
purpose, we used 13 J
-specific primers, the sequences of which are
listed in Toyonaga et al. (22).
To analyze the V-D-J junctional regions, we used the approach described
by Even et al. (23). Accordingly, the runoff products from
the V
-C
reactions were electrophoresed through 6% acrylamide
sequencing gels on an ABI Prism 377 (Applied Biosystems) the presence
of Genescan 500 marker labeled with TAMRA (401733) and ROX
(401734) from PerkinElmer as a internal size standard. The raw data
generated was further analyzed by Applied Biosystems Prism GeneScan and
Genotyper analysis software from Applied Biosystems. The output was a
histogram for each V
family showing a frequency distribution of
V-D-J junction lengths which infers the distribution of the lengths of
the CDR3 region.
For each of the 24 V
families, the histogram was examined and
classified into one of three patterns: 1) the presence of a solitary
peak or a dominant peak that was at least three times the height of any
other peaks; 2) a Gaussian distribution of V-D-J lengths or the absence
of any dominant peak as just defined; and 3) the absence of any PCR
product.
Sequencing of the TCR
Amplified PCR products were cloned and sequenced to determine the sequence differences in the CDR3 region. The PCR products were cloned into the PCR-Script TM SK+ vector (Stratagene, La Jolla, CA); random clones were picked and the plasmid with insert DNA was sequenced by using the Taq Dye Deoxy Terminator Cycle Sequencing reaction on Applied Biosystems model 9600 DNA sequencing systems (PE Applied Biosystems). The forward and reverse primers T3 and T7, respectively, were used as sequencing primers. The CDR3 was defined according to Moss and Bell (24) and germline sequences were obtained from Toyonaga et al. (22).
| Results |
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Fig. 1
is a summary of the analyses
of V-D-J junction size distributions of amplified cDNA from 10 melanoma
metastases that developed inflammation following treatment with DNP
vaccine. Most of these were superficial metastases that showed clinical
signs of inflammation (erythema, swelling, warmth), which was confirmed
by histological examination showing infiltration of melanoma cells by T
lymphocytes (25). One sample was a lung metastasis that
was excised because it was solitary and stable in size; there was
histological evidence of inflammation.
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families. Although no two samples were identical, the occurrence of
dominant peaks was not completely random. For six V
families (V
7,
12, 13, 14, 16, and 23), dominant peaks of V-D-J junction size were
seen in two or more samples. For seven other V
families (V
3, 5,
8, 18, 19, 21, and 24), dominant peaks were never detected.
Serendipitously, 6 of the 10 patients expressed HLA-A1, and 5 of these
were associated with HLA-B8. The V
12 and V
14 families showed
dominant peaks in three of these specimens, respectively, but there
were no other discernible similarities.
Dominant peaks among the V-D-J junction size distributions were found
much less frequently in the control materials. Only 4 of 10 matched
PBL, collected from the 10 tumor donors at the approximate time of
tumor excision, showed dominant peaks, which, with two exceptions
(V
2 in patient 20297 and V
20 in patient 20119), did not
correspond to the clonally expanded V
families in the inflamed
tumors (Fig. 2
). For five patients tumors
obtained before vaccine treatment were available for analysis. As shown
in Fig. 3
, two of these metastases
displayed a total of five dominant peaks; two of these (V
6 in
patient 20360 and V
22 in patient 20319) appeared to have been lost
in postvaccine tumors. Finally, we analyzed 11 randomly selected lymph
node metastases from patients who never had been treated with vaccine
(Fig. 4
). With one exception
(V
15 in patient 110), the V-D-J junction size distributions
were all polyclonal.
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For two patients, we were able to study two inflamed tumor
specimens that had been excised from different anatomical sites. The
results are summarized in Fig. 5
. For
patient 20063, the tumors were excised at two time points postvaccine,
4 mo apart. Both showed dominant V-D-J peaks in V
7 and V
10. For
patient 20297, the tumors were excised at the same time postvaccine but
from two different sites (abdomen and inguinal); both were clinically
inflamed and had intense T cell infiltrates by histological
examination. Dominant V-D-J peaks in the V
4, V
17, and V
23
families were found in both specimens.
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subfamilies (Fig. 6
7-J
1.2 and V
7-J
1.3 in both postvaccine
inflamed tumors, but not in matched PBL. For patient 20297, dominant
peaks were observed in four V
4 subfamilies, J
1.1, 1.2, 2.1, and
2.4, in both tumor specimens, but were not seen in PBL. Analysis of
V
17 subfamilies also showed dominant J
peaks but there were none
common to both specimens. An example of the V-D-J size distribution
histograms for patient 20297 is shown in Fig. 7
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Seven postvaccine tumor samples that displayed dominant peaks in
the V-D-J junction size distributions were further analyzed by cloning
and sequencing of the V-D-J genes, from which were deduced the amino
acid sequences of the CDR3 regions. From these 7 samples, 42 clones
were obtained and all were sequenced. For each patient, we compared the
CDR3 sequences found in the tumor with sequences found in the same V
subfamily of matched PBL. The results are shown in Table I
.
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12-J2.1) from specimen 20113, five of seven clones (V
23-J2.1)
from specimen 20254, and three of six clones (V
7-J2.6) from specimen
20249. In the abdominal metastasis from patient 20297, all six clones
were V
4-J1.1, comprising one of two CDR3 sequences. This sequence
was not detected in the inguinal metastasis from this patient; instead,
three of five clones were V
4-J2.1, which was still consistent with
the J
overexpression pattern observed in these two specimens (Fig. 6Clinical correlations
Four of these 10 patients had measurable metastases that developed inflammation after DNP vaccine treatment. In three of these four cases, the tumors regressed at least partially; these antitumor responses have been described and documented (14). The other six patients were clinically melanoma free when DNP vaccine administration was initiated, but developed recurrent metastases that were inflamed by clinical and histological criteria. Following resection of these tumors, three patients have died and three have remained alive and melanoma free at 7.1, 7.7, and 8.4 years, respectively. Thus, it appears that the infiltration of metastases by clonally expanded T lymphocytes was associated with a favorable clinical response and prognosis.
| Discussion |
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It has been demonstrated in several animal models that T cells
responding to tumor-associated Ags utilize a restricted TCR repertoire
(27, 28, 29). These observations have been extended to human
tumors by Ferradini et al. (2), who showed that T cells
infiltrating a metastatic melanoma undergoing immunological regression
were clonally expanded. They studied a patient who was exhibiting
spontaneous regression of a large soft tissue metastases that was
accompanied by clinical signs of inflammation and massive T cell
infiltration. These T cells greatly overexpressed V
16, and 38 of 45
cDNA clones had the same V-D-J rearrangements (V
16 J2.1).
Some investigators have reported clonal expansion of T cells
infiltrating untreated and nonregressing human cancers. However, this
phenomenon has been reported mainly in primary tumors (3, 4, 5, 30, 31). Whether clonally expanded T cells spontaneously infiltrate
metastases is less clear. Studies of melanoma metastases are limited by
the fact that, nodal metastases aside, they are characterized by
absence of an inflammatory response (32, 33). In
particular, s.c. metastases rarely have lymphocytic infiltration, and
the percentage of lymphocytes in cell suspensions made from these
tumors is usually <10%. In a previous study of melanoma metastases
excised before and after vaccine administration (11), we
reported that six of six prevaccine tumors displayed differences in the
expression in a total of 22 V
gene families when compared with
matched prevaccine PBL. Only 4 of 22 of these V
gene families were
overexpressed in postvaccine lesions as well, and in all four cases the
expression was increased by vaccination.
In this article, we again demonstrate oligoclonality in T cells from
melanoma metastases before treatment, but at a much lower frequency.
Only 3 of 16 tumors excised before vaccine or from untreated patients
displayed dominant CDR3 peaks in a total of 6 V
families. The
different results are attributable to the difference in technique:
Whereas a dominant peak in the size distributions of the V-D-J
junctional regions implies clonal expansion of T cells, the mere
overexpression of a particular V
family, particularly at a low
level, could occur as a result of polyclonal expansion as well. The
presence of dominant clones in pretreatment metastases could signify a
baseline T cell response to one or more melanoma Ags, but in most cases
this appears to be qualitatively different from that induced by the DNP
vaccine.
There is evidence that cytokine therapy can induce clonal expansion of
T cells at the tumor site. Willhauk et al. (34) compared
melanoma metastases that appeared to be regressing after treatment with
IL-2 plus IFN-
with tumors that were not responding. Although seven
of seven responding tumors contained T cells showing overexpression of
some V
families, zero of five nonresponding tumors did so. It is
noteworthy that the TCR pattern of the overexpressed V
gene families
was diverse even when patients with matching HLA-A phenotypes were
compared. Similarly, Kumar et al. (35) reported dominant
CDR3 peaks in three liver metastases of colon carcinoma following IL-2
treatment and in only one of four controls. Although Puisieux et al.
(36) could not find expansion of any particular V
families following treatment with a chemoimmunotherapy regimen
containing the same cytokines, the concomitant administration of
cytotoxic drugs in their regimen may have compromised the T cell
response.
There are few published analyses of the effect of human tumor vaccines
on the T cell repertoire infiltrating metastatic sites
(37). Sensi et al. (11) reported our initial
study of the TCR-V
repertoire in melanoma metastases that developed
inflammation following treatment of patients with autologous
DNP-modified vaccine. Posttreatment tumors from six of six patients
overexpressed from one to three V
families. CDR3 length analysis of
two tumors showed oligoclonal peaks, one of which was confirmed to be
clonal by cDNA sequencing. Moreover, T cells from one of these samples
were expanded in vitro and found to be cytotoxic for the autologous
melanoma cells.
In this article, we have expanded the studies to 10 melanoma patients,
3 of whom were also analyzed by Sensi et al. (11).
Moreover, we studied all of the specimens with a more sensitive and
specific techniqueanalysis of the length of the CDR3, which allows
for the detection of expanded TCR clones within each V
family,
regardless of whether a particular family is overexpressed. In 9 of 10
metastases that developed inflammation following treatment of patients
with DNP vaccine, we detected clonal expansion in one or more V
families. These findings were validated by direct sequencing of the
TCR. Of particular interest were the results of analysis of tumors
obtained from the same patient following vaccine treatment but from two
different sites. CDR3 peaks were detected in V
7 and 10 in both
specimens from patient 20063 and in V
4, 17, and 23 in both specimens
from patient 20297. These results imply that the T cell response to the
paired tumors of each patient may have been elicited by similar
antigenic determinants.
Our results indicate that the administration of DNP vaccine induced the expansion of T cell clones that were undetectable before treatment. Since these clones infiltrated the tumor sites and were not found in PBL, they were presumably elicited by melanoma-associated Ags. Moreover, the TCR rearrangement data and CDR3 sequencing reported here appear to correlate with clinical findings. Of the four patients with measurable metastases, three had tumor regression following administration of DNP vaccine (14). Of the six patients who were clinically tumor free when DNP vaccine administration was initiated but who subsequently developed recurrent metastases that were inflamed, three are long-term survivors postvaccine. Since the tumors were selected for study only because they developed inflammation, the data support the argument that the DNP vaccine-induced inflammatory response, mediated by clonally expanded T cells, has biological significance.
There are technical limitations that could affect these
interpretations. Our criterion for designating oligoclonal expansion in
a given V
family was strict: There had to be a clearly defined
dominant peak in the histogram of CDR3 size distributions.
Consequently, we may have overlooked TCR clones that were present at a
low frequency in a polyclonal background. Thor Straten et al.
(38) suggested that the picture may be less clear when a
more sensitive technique for defining TCR clonality is used. Analyzing
PCR products by denaturing gradient gel electrophoresis, they detect as
many as 60 different clonotypes in each of 6 s.c. melanoma
metastases that were apparently growing progressively. These
clonotypes were not found in matched PBL. To determine the significance
of these findings would require application of this technique to
metastases that were undergoing immunological regression.
Although a variety of human cancer vaccines are in clinical trials, none has yet been validated in a pivotal study. We would argue that the results presented here provide support for our approach of using autologous tumor cells that have been modified by a hapten and supplement the immunological and clinical results previously reported (12, 13, 14). The search for cross-reacting tumor Ags should not obscure the possibility that each human cancer may have unique Ags and that these may be more important in eliciting an antitumor T cell response.
| Acknowledgments |
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| Footnotes |
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2 Address correspondence and reprint requests to Dr. David Berd, Thomas Jefferson University, 1015 Walnut Street, Suite 1024, Philadelphia, PA 19107. E-mail address: d_berd{at}mail.jci.tju.edu ![]()
3 Abbreviations used in this paper: DNP, dinitrophenyl; CDR3, complementarity-determining region 3. ![]()
Received for publication March 8, 2002. Accepted for publication July 10, 2002.
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