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Lys Substitution in HLA-DR Molecules Predisposing to Rheumatoid Arthritis and with Their Selective Interactions with 70-kDa Heat Shock Protein Chaperones1


* Clinical Research Unit for Rheumatology and
Institute of Biochemistry and Molecular Biology, Albert Ludwigs University, Freiburg, Germany; and
Neurosciences Group, Weatherall Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford, Oxford, United Kingdom
| Abstract |
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subunit to a specific T cell clone by APC
from DRB1*0401+ than *0408+ donors. Using DR*04
transfectants, we show that this difference results largely from the
single Lys71
Arg interchange (0401
0408), which
scarcely affects epitope binding, rather than from any other associated
polymorphism. Furthermore, we proved our recombinant polypeptides to
contain the Escherichia coli 70-kDa heat shock protein
molecule DnaK and its requirement for efficient processing and
presentation of the epitope by DRB1*0401+ cells. According
to a recent report, 70-kDa heat shock protein chaperones preferentially
bind to the QKRAA, rather than the
QRRAA, motif. Variations between the shared
epitope motifs QKRAA and QRRAA are emphasized by underlining. We
propose that such interactions enhance the intracellular epitope
loading of *0401 molecules. They may thus broaden immune responses to
pathogens and at least partially explain the distinct contributions of
DRB1*0401 and other alleles to disease
predisposition. | Introduction |
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helix of the HLA-DR
-chain (QKRAA, QRRAA, and RRRAA). DRB1*0401 with QKRAA is a
common allele, especially in the Northern European population (4, 5). QRRAA occurs in subtypes of several DR serotypes, e.
g., DR1 (DRB1*0101), DR4 (DRB1*0404, DRB1*0405, DRB1*0408), and
DR6 (DRB1*1402); RRRAA occurs in DR10 (DRB1*1001). Shared
epitope-positive DR molecules may differ in detail functionally,
because of other sequence differences elsewhere in the peptide binding
groove (6).
The QKRAA motif has also been detected in microbial molecules, notably
chaperones related to the Escherichia coli DnaJ protein
(7, 8). The many related DnaJ proteins, defined
by a common J domain of 7080 aa (9), cooperate with
members of the 70-kDa heat shock protein (Hsp70) family of chaperones
in generating a machinery involved in protein folding and transport
(10). Many, but not all, DnaJ proteins contain a QKRAA
motif within the J domain that is essential for interaction with Hsp70
proteins (11). Alterations in this motif
(QKAAA, QARAA, QAAAA) in the
E. coli DnaJ lower its affinity for the E. coli
Hsp70 homolog DnaK (12). Variations between the shared
epitope motifs are emphasized by underlining. In addition, a peptide
containing this motif competes with DnaJ for binding to DnaK
(13). Auger et al. (14, 15) reported that the
QKRAA motif also mediates binding between QKRAA-positive DR
-chains
and certain Hsp70 molecules, e.g., DnaK and the mammalian constitutive
Hsc70, but the specificity of this binding was subsequently questioned
(16).
The CD4+ T cell clone PM-A derives from the
thymus of a patient with myasthenia gravis (DR3, DRB1*0408). It was
raised against recombinant human acetylcholine receptor (AChR)
subunit and recognizes a natural epitope in the 144163 region of this
Ag presented by DR4 molecules with Gly86, rather
than Val86 (17, 18). In contrast
with most other DR4-restricted T cells, which absolutely require the
autologous Lys71 or Arg71,
PM-A T cells recognize short peptides very well on both the autologous
0408 (Arg71) and the heterologous 0401
(Lys71), both of which bind these peptides well
(6, 19). Surprisingly, however,
0401+ PBMC present longer polypeptides and whole
AChR much better than those with the autologous 0408
(20).
Using the murine macrophage-like cell line P388.D1 transfected with
HLA-DR
- and
-chains (17), we show here that 1) APCs
differing only by Lys71
Arg
(QKRAA
QRRAA) handle the same autoantigen
preparation very differently; and 2) the efficiency of QKRAA-positive
murine and human APCs is enhanced by DnaK, the E. coli Hsp70
chaperone, in the Ag preparation. These data imply that Hsp70
chaperones selectively facilitate the peptide loading of certain MHC
class II molecules.
| Materials and Methods |
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The mouse macrophage-like cell line P388.D1 was transfected to
express human HLA-DRA*0101 and DRB1*0401 (Lys71)
or *0408 (Arg71) genes (17). The
latter was derived by site-directed mutagenesis from the 0404 sequence
(Arg71) by changing its
Val86
Gly86. The
published sequence of DRB1*0408 (aa 36123) is identical with that of
0401 apart from this
Lys71
Arg71 interchange
(21). TP cells were grown as previously described
(17). Lines were cloned when necessary and were selected
for similar DR expression, which was checked routinely before and after
each experiment. For Ag presentation assays they were untreated, fixed
with glutaraldehyde (0.05%, 30 s, 21°C), or treated with
mitomycin C (50 µg/ml, 45 min, 37°C; Roche, Indianapolis, IN).
Human PBMC were T cell-depleted by rosetting with SRBC and irradiated
(30 Gy). In some experiments TP cells were pretreated with murine
IFN-
(100 U/ml, 48 h; BD PharMingen, Heidelberg, Germany).
T cells
The generation, maintenance. and specificity of the human CD4+ T cell clone PM-A and the murine T cell hybridoma 3DO were previously described (6, 18, 19, 20, 22).
Antigens
The recombinant polypeptide r1437 was expressed in E. coli. It was purified as previously described (23). The synthetic peptide p144163 was used at 10 µg/ml. OVA and superantigen (staphylococcal enterotoxin B (SEB)) were purchased from Sigma-Aldrich (St. Louis, MO).
Presentation assays
Fixed TP cells were pulsed with p144163 for 150 min at
37°C, washed, and plated at 3 x 104
cells/culture in flat-bottom microculture plates (Nunc, Wiesbaden,
Germany) together with the same number of PM-A T cells in RPMI complete
medium (17) supplemented with 5% human
A+ serum. Viable TP cells were used at
concentrations ranging from 2.5 x 103 to
1 x 105 cells/culture and were incubated
with 5 x 104 PM-A cells/culture and 1.7
µg/ml r1437. Alternatively, the Ag r1437 was titrated from
1.610,000 ng/ml in the presence of 5 x
104 TP cells. For stimulation of the OVA-specific
3DO T cells, TP cells were used untreated or were induced by IFN-
,
treated with mitomycin C, and plated at 1 x
105 cells/culture together with 3DO T cells
(5 x 104 cells/culture) and SEB (1 µg/ml)
or OVA (titrated from 1 mg/ml to 30 µg/ml). Supernatants were taken
after 2 days or 24 h (3DO experiments only). All cultures were set
up at least in triplicate.
T cell response assays
T cell cytokines (human IFN-
or TNF-
, or murine
IL-2) released into culture supernatants were quantified by ELISAs (BD
PharMingen). Proliferation was assayed by
[3H]thymidine incorporation. Briefly, 1 µCi
[3H]thymidine (sp. act., 185 GBq/mmol; Amersham
Life Science, Little Chalfont, U.K.) was added after 72 h; plates
were harvested 18 h later (1295-001 Cell Harvester; Wallac, Turku,
Finland). The incorporated radioactivity was assessed on a Betaplate
counter (Wallac).
DnaK depletion of the r1437 preparation
DnaK was removed from r1437 preparations by affinity adsorption to ATP-agarose according to the published protocol (24, 25) with minor modifications. Briefly, ATP-agarose (1 ml; A2767; Sigma-Aldrich) was pretreated (25 mM HEPES/KOH (pH 7.6), 50 mM KCl, 5 mM MgCl2, 10 mM 2-ME, and 1 mM EDTA) and loaded with the r1437 preparation (1 ml). After incubation for 30 min at 4°C on an end-over-end mixer, the ATP-agarose was pelleted. The supernatant contained the r1437 devoid of DnaK. The protein concentration of r1437 preparations before and after depletion of DnaK was determined with the bicinchoninic acid protein assay reagent (Pierce, Augustin, Germany). In both preparations one identical band at 48 kDa was detected with SDS-PAGE, followed by staining with Coomassie brilliant blue. In addition there were occasionally one (or two) faint band(s) in the original preparations of the size of the DnaK monomer (and dimer), which were no longer detected in the DnaK-depleted preparations (not shown). Ag preparations were stored at -80°C and were used within 2 wk after depletion in functional experiments.
Flow cytometry
HLA-DR-specific mAbs (IOT2a, clone B8.12.2; Dianova, Hamburg, Germany) and Ia-specific mAbs (anti-I-Ad, clone AMS-32.1; BD PharMingen) were used, labeled with FITC or biotin. FITC-conjugated streptavidin was bought from Dianova.
Immunoblots
Various preparations of r1437 (identical protein
concentration of 550 µg/ml) as well as DnaK (0.1 µg/ml) were
separated on a 10% SDS-PAGE gel, followed by transfer onto
nitrocellulose membrane and immunoblotting with the anti-DnaK mAb
(SPA-880, clone 8E2; StressGen, Toronto, Canada) or a rabbit antiserum
specific for aa 3181 of the AChR
subunit and HRP-conjugated goat
anti-mouse IgG or anti-rabbit IgG (DAKO, Hamburg, Germany),
using enhanced chemiluminescence (Pierce) as detailed in the
manufacturers protocol. The amount of DnaK in the Ag preparation of
r1437 was estimated to be 0.075 µg/ml (before depletion).
Immunoprecipitation
A total of 1 ml of a preparation of r1437 was incubated with 5 µg/ml anti-DnaK mAb at 4°C for 2 h. Protein A-Sepharose (Pharmacia, Freiburg, Germany) was added (20 µl, 10% in 50 mM Tris (pH 8.0), 150 mM NaCl, 0.1% Nonidet P-40, and 100 µg/ml PMSF) and again incubated at 4°C for 2 h. The pellet was washed extensively with 50 mM Tris (pH 8.0), 500 mM NaCl, and 0.1% Nonidet P-40; resuspended in 10 mM Tris, (pH 8.0); and analyzed by SDS-PAGE and immunoblots. Artificial mixtures of DnaK and the DnaK-depleted preparation of r1437 were analyzed in the same way.
| Results |
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To study the influence of HLA-DR variants on Ag
processing and presentation, we compared mouse macrophage-like P388.D1
cells differing only by a single Lys71
Arg
exchange in their transfected DR4 molecules (17). We first
established that the two cell lines, TP0401 and TP0408, were
quantitatively comparable in these functions: 1) HLA-DR expression
(Fig. 1
A), 2) costimulatory
capacity for T cells in the presence of appropriate superantigens
(e.g., SEB; Fig. 1
, B and C), and 3) processing
and presentation of a 40-kDa protein Ag to a murine T cell hybridoma,
3DO cells, recognizing the chicken OVA-derived peptide p323339
presented by the murine class II molecule I-Ad.
TP cells show no constitutive murine class II expression, but it can be
induced by murine IFN-
. The levels of both
I-Ad and DR molecules on TP0401 and TP0408 were
comparable before and after IFN-
induction (not shown), as were both
the SEB-induced stimulation and the OVA-specific response of the
hybridoma (Fig. 1
C). In addition, TP cell clones differing
in their quantitative expression of HLA-DR were tested for their
costimulatory capacities (as in no. 2 above). These parameters
correlated strongly (r2 > 0.95; three
experiments with 11 clones); thus, the SEB response of 3DO cells serves
as an additional internal standard in functional experiments (e.g.,
Fig. 1
C). Additional experiments proved that TP0401 and
TP0408 can both activate human peripheral blood T lymphocytes (not
shown).
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As expected, fixed TP0401 and TP0408 cells both presented
the synthetic peptide p144163 and stimulated the T cell clone PM-A to
produce human IFN-
(Table I
), although
the efficiency of these murine cells was somewhat lower than of human
PBMC (not shown). TP0408 cells, carrying the autologous DR allele of
the PM-A T cells, were slightly more efficient than TP0401 cells, as we
have also observed previously with human PBMC (19, 20). TP
cells also stimulated PM-A T cells to produce human TNF-
(Table I
)
and IL-3/GM-CSF (17).
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subunit r1437. We here illustrate representative titrations of either
the APCs (Fig. 2
secretion
by the T cell clone. Very similar data were obtained when TNF-
was
assayed (not shown). The processing/presentation of the full-length
recombinant
subunit r1437 was consistently much more efficient by
TP0401 than by TP0408 in many experiments. In most, the difference was
almost all-or-nothing (Fig. 2
Arg interchange in the DR
-chain, rather than to any linked HLA region polymorphism or any
coincidental variation, e.g., in endosomal enzymes.
|
Since this difference between TP0401 and TP0408 affects processing
of longer polypeptides (Fig. 2
) rather than presentation of short
peptides (Table I
), it must reflect interactions with other molecules
participating in the processing pathway. Therefore, we next tested the
Ag preparations used above for the presence of chaperones that
discriminate between Lys71 and
Arg71 (14). By immunoblotting with a
specific Ab we detected the E. coli DnaK protein in the
preparation of r1437 (Fig. 3
, lanes 14). DnaK was also detected in other batches of
r1437 tested in the same way. DnaK and r1437 bound to each other,
as demonstrated by coprecipitation experiments (Fig. 3
, lane
5). ATP affinity chromatography (24, 25) was used to
deplete the r1437 preparation specifically of DnaK, which binds
quantitatively to ATP-agarose columns simultaneously releasing its
bound peptides (Fig. 3
, lanes 68). Indeed, the removal of
DnaK neither depleted the Ag r1437 (as the protein concentration did
not change) nor altered it grossly, as it gave the same band at 48 kDa
in Coomassie-stained SDS-PAGE (not shown) and could still be detected
with anti-AChR in immunoblots (Fig. 3
, lanes 9 and
10). In the original preparation (lane 9)
the antiserum detected some small antigenic proteins missing in the
DnaK-depleted preparation (lane 10). This
suggests either 1) partial depletion of these along with DnaK, 2)
instability of such breakdown products in the absence of DnaK, or 3) a
minor loading inequality of the lanes. Subtle changes in Ag
conformation or stability directly due to the removal of DnaK might be
expected and may be part of the mechanism through which Hsp70 molecules
enhance the antigenicity of the Ag.
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After depletion of DnaK, r1437 evoked substantially lower
IFN-
responses by T cells, with either TP0401 cells or human
DRB1*0401+ PBMC as APC (Fig. 4
, AC), even though the same
amount of Ag still was available for processing. Moreover, its
presentation was consistently reconstituted by adding purified E.
coli DnaK at certain concentrations, with an optimum at levels
similar to those detected in the original, undepleted, preparation
(Fig. 4
, CG). The same effects were observed when we
measured proliferative responses of the PM-A T cell clone using PBMC as
APC (Fig. 5
). IFN-
production and
proliferation, assayed in the same experiment, also correlated well.
Presentation by DRB1*0408+ human PBMC (Fig. 5
)
and TP0408 cells (not shown) was scarcely influenced by these
treatments. In additional controls, DnaK alone clearly did not
stimulate the PM-A cells (Figs. 4
and 5
) (26), nor did it
alter the SEB response or the Ag-specific response of 3DO cells (Fig. 6
).
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| Discussion |
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Arg71 (of 0408) interchange.
Furthermore, our data independently support the recent reports of
preferential interaction between the high responder DR
-chain (0401)
and DnaK, a bacterial Hsp70 molecule, or Hsc70, its human constitutive
homolog, that proved to bind the 70QKRAA, and not
the 70QRRAA, sequence of these two alleles
(13, 14).
Successful presentation of an Ag by nascent MHC class II molecules
usually requires its uptake and transport into the endosomal
compartment and its enzymatic degradation there. With the help of
HLA-DM and HLA-DO (H2-M and H2-O in the mouse), the processed epitope
replaces the class II-associated invariant chain peptide in the
class II binding groove. In TP cells autologous murine class II
molecules are usually only present at low levels, if at all. If the
same applies to the invariant chain, H2-M and H2-O, then it seems
unlikely that they participate in Ag presentation by transfected HLA-DR
molecules. However, even after induction with IFN-
, the difference
between TP0401 and TP0408 was still as great as that without induction
(not shown), again arguing that it did not depend on these
molecules.
The recombinant AChR polypeptide r1437 was purified from E. coli inclusion bodies. It is therefore not surprising that it was contaminated with bacterial DnaK. We have already shown the presence of E. coli Hsp60 in some preparations of r1437, recognized by another specific T cell clone (26). Since r1437 also includes the four transmembrane segments, which are rich in hydrophobic residues, it has a high number of potential DnaK binding sites (27). Furthermore, we have detected the human Hsc70 molecule in preparations of purified native human AChR (not shown) that are also processed/presented much better to PM-A by 0401+ than 0408+ APC (20).
Our results strongly suggest that APC take up r1437, much of it
complexed with DnaK (Fig. 3
). Such complexes reformed rapidly when DnaK
was added back to DnaK-depleted r1437 (not shown). Hsp70 molecules
may protect antigenic epitopes from destruction, favor suitable
proteolytic trimming, and/or greatly enhance presentation to T cells
(14, 28, 29). In our experiments the E. coli
Hsp70 homolog DnaK might have performed these proposed functions
instead of, or in combination with, endogenous Hsp70 molecules such as
Hsc70 in the APC. However, in the processing of r1437 there must, in
addition, be a selective interaction directly between DnaK and 0401; by
contrast, the presentation of short synthetic peptides to this T
cell actually appears better with 0408 (Table I
) (19).
Probably, therefore, DnaK and 0401 interact in endosomal compartments
during loading of the epitope into the DR peptide binding groove.
Indeed, DnaK can evidently bind both r1437 and 0401, almost certainly
in separate sites. Alternatively, although less likely, binding of DnaK
to 0401 alone might provide danger signals (30) and/or
enhance peptide presentation to T cells independent of any effect on
intracellular processing/presentation of whole proteins. Whether
endogenous Hsc70 indeed performs the same function in vitro or in vivo
needs to be tested in additional experiments.
TP0401 cells share the sequence QKRAA with DnaJ, the interaction
partner of DnaK in E. coli. In DnaJ, the QKRAA motif is part
of an
helix as in the DR
-chain. Recently, mutations changing
the DnaJ 61QKRAA into
61QARAA,
61QKAAA, or
61QAAAA clearly reduced the affinity
between DnaK and DnaJ. This reduction was more pronounced with the
Lys62 to Ala than with the
Arg63 to Ala exchange; both replacements together
reduced the interaction even further (12). Interestingly,
most T cell clones (at least 12 of the 16 cited in Ref. 6)
differentiate absolutely between Lys71 and
Arg71 in their DR restriction profile; PM-A T
cells are highly unusual in tolerating both of them so well. Although
considered a conservative difference, the Arg side chain is bulkier and
can make several more hydrogen bonds than Lys (31), and it
is not surprising that DnaK should distinguish between the two
residues. Taken together, these data suggest that the interaction
between DnaK and 0401 occurs via the sequence
70QKRAA, and that Arg71
cannot substitute for Lys71. This interpretation
is strongly supported by the data reported by Auger et al.
(14), showing binding by DnaK of
QKRAA-containing, but not QRRAA-containing,
peptides.
After DnaK-depletion of r1437, there still remained some difference
between 0401+ and 0408+
APC, at least in some experiments (Fig. 5
C). This may be due
to incomplete DnaK depletion of the Ag or to interactions of r1437
with the endogenous Hsc70 of the APC. We cannot formally exclude
additional Hsp70-independent differences between human
0401+ and 0408+
APC.
In our experiments DnaK alone had minimal effects on superantigen-
or Ag-specific T cell activation (
Figs. 46![]()
![]()
). Its enhancing activity
was restricted to the processed AChR epitope recognized by PM-A.
Therefore, its abilities to induce cytokines in monocytes
(32) or to function as nominal Ag for B and T cell
responses (Ref. 33 and our own unpublished observations)
were distinct from its chaperoning function in preferential loading of
the AChR epitope in 0401+ APC.
Both the QKRAA and the QRRAA motifs are strongly associated with RA, but apparently via distinct pathways, since compound heterozygotes, especially 0401/0404, are more susceptible than patients with either allele alone (34). Hence, while the interactions with Hsp70 molecules might not be essential for predisposition, their consequences for the repertoire of epitopes and/or the sensitivity of their recognition may influence the severity or onset of RA. Indeed, Hsp70 proteins and J proteins are also induced in synovial tissue of patients with RA, especially in synovial lining cells belonging to the fibroblast and macrophage lineages (35, 36, 37). Interestingly, too, there are signs of analogous differences in processing within other HLA-DR serotypes (38). In general, these may broaden the repertoire of potential T cell responses to pathogens as well as self Ags.
| Acknowledgments |
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| Footnotes |
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2 Address correspondence and reprint requests to Dr. Inga Melchers, Klinische Forschergruppe für Rheumatologie, Universitätsklinikum, Breisacher Strasse 64, 79106 Freiburg, Germany. E-mail address: melchers{at}nz11.ukl.uni-freiburg.de ![]()
3 Abbreviations used in this paper: RA, rheumatoid arthritis; AChR, acetylcholine receptor; Hsp70, 70-kDa heat shock protein; SEB, staphylococcal enterotoxin B; TP cell, transfected P388.D1 cell; TP0401 and TP0408, P388.D1 expressing HLA-DRB1*0401 and DRB1*0408, respectively. ![]()
Received for publication January 29, 2002. Accepted for publication July 12, 2002.
| References |
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dimorphism in autoantigen presentation to human T cells. Proc. Natl. Acad. Sci. USA 88:7343.
-subunit. Biochem. Soc. Transact. 17:219.
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