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Section of Retroviral Immunology, Center for Biologics Evaluation and Research, Food and Drug Administration, Bethesda, MD 20892
| Abstract |
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3' direction, and that a 5'
motif can block recognition of immediately 3' sequences. These findings
contribute to our understanding of the immunomodulatory activity of
DNA-based products and the rules that govern immune recognition of
stimulatory and suppressive motifs. | Introduction |
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Krieg et al. (16) were the first to report that neutralizing or suppressive motifs can selectively block CpG-mediated immune stimulation. These motifs inhibited cytokine production in vitro and reduced the adjuvant effects of CpG DNA in vivo. Suppressive motifs are rich in polyG or -GC sequences, tend to be methylated, and are present in the DNA of mammals and certain viruses (16, 17, 18).
Little is known about the kinetics, magnitude, or nature of the immune
inhibition elicited by suppressive motifs. Current studies establish
that the immunostimulatory activity of CpG DNA can be reversed within
several hours by removal of stimulatory DNA or addition of suppressive
DNA. Stimulatory and suppressive DNA binds to and interacts with the
same cells. When both sequence types are present on a single strand of
DNA, recognition proceeds in a 5'
3' direction. Suppression is
generally dominant over stimulation, although a motif in the 5'
position can interfere with recognition of a motif immediately
downstream. Understanding the rules governing cellular responses to
stimulatory and suppressive motifs should facilitate the design of
oligodeoxynucleotides
(ODN)3 for
therapeutic uses.
| Materials and Methods |
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Female BALB/c mice were obtained from The Jackson Laboratory (Bar Harbor, ME). The mice were housed under specific pathogen-free conditions and were used at 820 wk of age. All studies involved protocols approved by the Center for Biologics Evaluation and Research animal care and use committee.
Oligodeoxynucleotides
Studies used phosphorothioate-modified ODNs that were synthesized at the Center for Biologics Evaluation and Research core facility (19). The following ODNs were used: immunostimulatory, ODN1466 (TCAACGTTGA) and ODN1555 (GCTAGACGTTAGCGT); control, ODN1471 (TCAAGCTTGA) and ODN1612 (GCTAGAGCTTAGGCT); and suppressive, ODN1502 (GAGCAAGCTGGACCTTCCAT) and ODNH154 (CCTCAAGCTTGAGGGG). The underlined bases represent the 10-mer sequences that were incorporated into complex multideterminant ODN used in some experiments. There was no detectable protein or endotoxin contamination of these ODN.
Mammalian DNA was purified from BALB/c spleens (Wizard Genomic DNA purification kit; Promega, Madison, WI). Escherichia coli DNA was obtained from Life Technologies (Gaithersburg, MD). Endotoxin contamination in these preparations was <0.1 U/ml after purification (20). Double-stranded DNA was converted to ssDNA by heat denaturing at 95°C for 5 min, followed by immediate cooling on ice.
Cytokine ELISAs
Spleen single-cell suspensions were washed three times and
resuspended in RPMI 1640 supplemented with 5% heat-inactivated FCS,
1.5 mM L-glutamine, and 100 U/ml of
penicillin/streptomycin. Cells (5 x
105/well) were cultured in flat-bottom microtiter
plates (Costar, Corning, NY) with 1 µM ODN for 1824 h. Culture
supernatants were collected, and cytokine levels were measured by
ELISA. In brief, 96-well Immulon H2B plates (Thermo LabSystems,
Franklin, MA) were coated with cytokine-specific Abs and blocked with
PBS 1% BSA as previously described (21). Culture
supernatants were added, and bound cytokine was detected by the
addition of biotin-labeled secondary Abs, followed by
phosphatase-conjugated avidin and a phosphatase-specific colorimetric
substrate (PNPP; Pierce, Rockford, IL). Standard curves were generated
using recombinant cytokines. The detection limit for these assays was
0.8 U/ml for IFN-
, 0.1 ng/ml for IL-6, and 0.1 ng/ml for IL-12. All
assays were performed in triplicate.
Cytokine-specific ELISPOT assays
A spleen single-cell suspension prepared in RPMI 1640 plus 5% FCS was serially diluted onto plates precoated with anti-cytokine Abs (21). Cells were incubated with 1 µM ODN at 37°C for 812 h, and the secretion of cytokine was detected colorimetrically as previously described (21).
Cell surface binding and internalization of ODN
Spleen cells (2 x 106/ml) were incubated with 1 µM of unlabeled and/or fluorescent-labeled ODN for 10 min at 4°C (binding experiments) or for 1 h at 37°C (uptake experiments). Cells were washed, fixed, and analyzed by FACScan (BD Biosciences, San Jose, CA) (22).
Statistical analysis
Statistically significant differences between two groups were determined using the Wilcoxon rank-sum test. When comparing more than two groups, differences were determined using a two-tailed nonparametric ANOVA with Dunns post-test analysis. A value of p < 0.05 was considered significant.
| Results |
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Single-stranded bacterial DNA and synthetic ODN containing
unmethylated CpG motifs stimulate immune cells to mature, proliferate,
and produce cytokines, chemokines, and Ig (2, 3, 4, 5). These
effects can be blocked by polyG- and/or GC-rich DNA motifs (16, 23). Scores of ODNs were synthesized and tested to identify
motifs that selectively inhibited CpG-induced immune responses. The two
most active of these suppressive ODN (ODN1502
(GAGCAAGCTGGACCTTCCAT) and ODNH154
(CCTCAAGCTTGAGGGG)) were selected for detailed study. As shown in
Fig. 1
, these suppressive ODN blocked a
majority of the IFN-
production induced by bacterial DNA or CpG ODN
(p < 0.01). Suppressive ODN were neither toxic
nor broadly immunosuppressive, as they did not interfere with the
mitogenic activity of LPS or Con A (Fig. 1
and data not shown).
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1:3
(Fig. 2
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2 h showed only minimal activation (Fig. 4
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The results described above indicate that CpG-induced immune
activation can be reversed either by adding suppressive ODN or by
removing stimulatory ODN. This suggests that suppressive ODN might
block the ongoing uptake of CpG DNA. Yet FACS analysis demonstrated
that neither cell surface binding nor internalization of FITC-labeled
CpG ODN was significantly reduced by suppressive ODN at concentrations
that blocked cytokine production by
75% (Fig. 5
and data not shown). Moreover,
precisely the same cells that bound and internalized CpG ODN interacted
with suppressive ODN (Fig. 6
).
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The above studies establish that suppressive motifs on one strand of DNA block the immune activation induced by stimulatory motifs on a different strand (i.e., trans-suppression). To better understand the interaction between suppressive and stimulatory motifs, ODNs containing both were synthesized. A set of four 20-mer ODNs was constructed in which one of two different CpG motifs was placed immediately 5' to either of two suppressive motifs (referred to as [CpG-Sup] ODN).
All four of these [CpG-Sup] ODN were stimulatory, triggering murine
spleen cells to produce IL-6, IL-12, and IFN-
to the same extent as
an ODN of the same length in which the suppressive motif was replaced
by a control sequence (i.e., one that was neither stimulatory nor
suppressive; Table II
). [CpG-Sup] ODNs
did not inhibit the immune activation induced by an independent CpG ODN
(Table II
). These results suggest that a suppressive motif is inactive
when located immediately 3' to a CpG motif on the same strand of
DNA.
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10 bases yielded ODNs that were suppressive,
demonstrated by their ability to block the stimulatory activity of
coadministered CpG ODNs (Table III
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| Discussion |
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Previous studies established that CpG DNA interacts with TLR9 to
trigger the translocation of NF-
B from the cytoplasm to the nucleus
and the subsequent up-regulation of cytokine gene expression (1, 6, 27, 28, 29, 30). Current results demonstrate that this is not an
all-or-none phenomenon. Although NF-
B translocation is initiated
within minutes of CpG administration (29), the subsequent
increase in cytokine production occurs over a period of hours
(2) and is significantly reduced by the addition of
suppressive ODN or the removal of stimulatory CpG DNA (Figs. 3
and 4
).
Consistent with these findings, suppressive motifs were recently shown
to down-regulate CpG-dependent NF-
B and AP-1 induction (17, 18). These observations suggest that CpG motifs must
continuously signal receptive cells for triggering to persist.
The sequence and length of a DNA strand determine its activity. By synthesizing and testing scores of ODNs, our laboratory and that of Krieg et al. independently identified G- and GC-rich motifs that selectively block CpG-dependent activation (16). Of note, Zhao et al. (31) showed that not all GC-rich repeats confer suppressive activity, while Halpern et al. (32) showed that ODNs containing runs of >15 polyGs can inhibit both CpG- and mitogen-induced immune responses. Suppressive activity appears to depend upon an ODN's secondary/tertiary structure, although sequence-nonspecific competition for ODN uptake is also possible (28). In this context, G-rich regions facilitate the formation of complex intra- and interchain Hoogsteen hydrogen bonds (33, 34). Depending on how these chains fold, activity may be gained or lost.
To validate the findings in this report, all experiments were repeated
with multiple ODNs containing different combinations of suppressive
and/or CpG motifs. In addition, the critical role of the suppressive
motifs was established by showing that control motifs neither enhanced
nor prevented CpG induced immune stimulation. The data in Tables II
and III
and Fig. 6
suggest that suppressive and stimulatory motifs are
active on the same cells, and that their relative locations on a DNA
strand determine the magnitude and nature of the resultant response.
The results indicate that 1) cellular recognition of stimulatory and
suppressive motifs proceeds in a 5'
3' direction; and 2) suppression
is generally dominant over stimulation, however, 3) when a CpG motif is
immediately 5' to a suppressive motif, stimulation dominates. A likely
explanation for the latter phenomenon is that molecules involved in
recognizing the 5' motif block the cells ability to interact
with an immediately adjacent suppressive motif, perhaps due to steric
hindrance. When the distance between motifs exceeds 10 bases, this
effect dissipates.
Our finding that the relative location of CpG vs suppressive motifs on
a single strand of DNA influences the resultant immune response
strongly suggests that individual cells recognize both motifs.
Experiments using labeled ODNs demonstrate that both types of DNA enter
the same cells (Fig. 5
and data not shown). Indeed, the possibility
that one type of cell responds only to stimulatory motifs and another
only to suppressive motifs is inconsistent with the results in Tables II
and III
. Moreover, the data shown in Table I
indicate that cells
exposed to suppressive ODNs do not produce factors or interact on a
cell-to-cell basis in such a way as to inhibit other cells from
responding to CpG motifs.
Suppressive ODNs could be of use in several therapeutic settings. CpG motifs in antisense and gene therapy vectors contribute to the immune recognition of transfected cells (35). Introducing suppressive sequences 5' to CpG motifs in these vectors might dampen this immune response and prolong the vectors in vivo activity (16). Alternatively, the immunogenicity of DNA vaccines might be improved by deleting suppressive motifs (16). Finally, suppressive ODN may prove useful in situations where the hosts response to bacterial DNA contributes to pathology, as in septic shock or autoimmune disease (11, 25, 36, 37). Since suppressive ODN precisely target the inflammatory response induced by CpG DNA, these therapies may avoid the deleterious side effects associated with generalized immunosuppressive regimens.
| Footnotes |
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2 Address correspondence and reprint requests to Dr. Dennis M. Klinman, Building 29A, Room 3D10, Center for Biologics Evaluation and Research, Food and Drug Administration, Bethesda, MD 20892. E-mail address: klinman{at}cber.fda.gov ![]()
3 Abbreviations used in this paper: ODN, oligodeoxynucleotide. ![]()
Received for publication April 19, 2002. Accepted for publication September 6, 2002.
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