The Journal of Immunology, 2002, 169: 99-107.
Copyright © 2002 by The American Association of Immunologists
Exogenous Peptides Delivered by Ricin Require Processing by Signal Peptidase for Transporter Associated with Antigen Processing-Independent MHC Class I-Restricted Presentation1
Daniel C. Smith*,
Awen Gallimore
,
Emma Jones
,
Brenda Roberts*,
J. Michael Lord*,
Emma Deeks*,
Vincenzo Cerundolo
and
Lynne M. Roberts2,*
* Department of Biological Sciences, University of Warwick, Coventry, United Kingdom; and
Molecular Immunology Group, Nuffield Department of Medicine, John Radcliffe Hospital, Oxford, United Kingdom
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Abstract
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In this study we demonstrate that a disarmed version of the
cytotoxin ricin can deliver exogenous CD8+ T cell epitopes
into the MHC class I-restricted pathway by a TAP-independent, signal
peptidase-dependent pathway. Defined viral peptide epitopes genetically
fused to the N terminus of an attenuated ricin A subunit (RTA) that was
reassociated with its partner B subunit were able to reach the early
secretory pathway of sensitive cells, including TAP-deficient cells.
Successful processing and presentation by MHC class I proteins was not
dependent on proteasome activity or on recycling of MHC class I
proteins, but rather on a functional secretory pathway. Our results
demonstrated a role for signal peptidase in the generation of peptide
epitopes associated at the amino terminus of RTA. We showed, first,
that potential signal peptide cleavage sites located toward the N
terminus of RTA can be posttranslationally cleaved by signal peptidase
and, second, that mutation of one of these sites led to a loss of
peptide presentation. These results identify a novel MHC class I
presentation pathway that exploits the ability of toxins to reach the
lumen of the endoplasmic reticulum by retrograde transport, and suggest
a role for endoplasmic reticulum signal peptidase in the processing and
presentation of MHC class I peptides. Because TAP-negative cells can be
sensitized for CTL killing following retrograde transport of
toxin-linked peptides, application of these results has direct
implications for the development of novel vaccination
strategies.
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Introduction
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Protective
CD8+ CTL that recognize viral or tumor peptides
in association with MHC class I are deemed valuable in controlling
pathogen spread and, potentially, in reducing tumor progression. In
recent years, several avenues have been investigated to pursue the
challenge of artificially inducing protective CTL (1, 2, 3).
These methods have used both live and non-live vectors to deliver Ags
to the cytosol for subsequent presentation of peptides that correspond
to epitopes recognized by CTL. Indeed, several protein toxins
constitute a class of non-live vectors whose intracellular trafficking
and/or membrane translocation abilities can be exploited to allow
delivery of peptides for the induction of a CTL response
(4, 5, 6, 7, 8, 9).
In a previous study we showed that the A subunit of a
catalytically defective Shiga-like toxin 1
(SLT1)3 could be
engineered so that the holotoxin could successfully deliver a viral
peptide into the conventional MHC class I processing and presentation
pathway (7). However, due to the restricted cellular
expression pattern of CD77 (10), the receptor for SLT1,
the use of this protein as a generalized delivery vehicle may be
limited. By contrast, the plant cytotoxin ricin has the capacity to
bind to and be endocytosed into a vast number of different cell types
(11). Ricin, like SLT1, has an unusual endocytic routing
that takes it from the cell surface via the Golgi complex to the
endoplasmic reticulum (ER) lumen (12, 13, 14). In a productive
intoxication of the cell, the fraction of toxin that reaches the ER is
somehow perceived as a substrate for ER-associated protein degradation
(ERAD). This arm of the ER quality control process normally apprehends
newly synthesized but aberrant proteins or orphan subunits of
oligomers, and triggers their passage through Sec61 channels to the
cytosol. In a tightly coupled sequence of events, such dislocated
proteins are normally deglycosylated, certain lysyl residues
become ubiquitinated, and the protein is then degraded by proteasomes
(reviewed in Ref. 15). In the ER lumen, the
catalytic subunit of ricin, though structurally native and endocytosed
from the exterior of the cell, appears able to exploit this process to
enter the cytosol (16).
From our understanding of these events, we reasoned that genetic
fusions of immunodominant epitopes with toxins such as SLT1 and ricin
could be introduced directly into the MHC class I processing pathway
after their retrotranslocation to the cytosol from the ER. In the
present study we have investigated the potential of using a disarmed
version of ricin to deliver exogenous epitopes and found that, in
contrast to SLT1 and most other toxin carriers, delivery and
presentation of viral peptides is not dependent on proteasome activity
or TAP. We present evidence for release of viral peptides from the
toxin carrier by ER signal peptidase due to the presence of a potential
signal peptidase cleavage site in the surface-exposed N-terminal
segment of mature ricin A chain (RTA). Therefore, use of engineered
ricin may be of particular value in delivering peptides to MHC class I
molecules in TAP-deficient cells, e.g., in tumors where there is a
down-regulation of TAP (17).
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Materials and Methods
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Reagents
Synthetic peptides ASNENMDAM (peptide 366374 of the
influenzanucleoprotein (NP)) and KAVYNFATC (LCMV glycoprotein
(gp33)), encompassing the 366374 residues of influenza nucleoprotein
and the 3341 residues of lymphocytic choriomeningitis virus (LCMV),
respectively, were obtained from Alta Bioscience (Birmingham, U.K.) and
stored at -20°C in PBS. Lactacystin (Calbiochem, La Jolla, CA),
brefeldin A (BFA; Sigma, Poole, U.K.), chloroquine (Sigma),
decanoyl-Arg-Val-Lys-Arg-chloromethylketone (Bachem, St. Helens, U.K.)
were used for inhibition studies at the concentrations indicated in the
figures.
Cell lines
RMA cells and the corresponding TAP-deficient RMA-S cell line,
both derived from a Rauscher virus-induced T cell lymphoma, and MC57
cells, a C57BL/6-derived fibrosarcoma, were grown in RPMI 1640
(Life Technologies, Rockville, MD) containing 10% (v/v) FCS, 2
mM L-glutamine, 100 U/ml penicillin, and 100 µg/ml
streptomycin. For IFN-
stimulation, cells were incubated in the
presence of 10 U/ml murine rIFN-
(PeproTech, London, U.K.) for
48 h. CTL lines were maintained in RPMI 1640 containing 10% (v/v)
FCS, 2 mM L-glutamine, 100 U/ml penicillin, 100 µg/ml
streptomycin, 1 mM sodium pyruvate, and 50 µM 2-ME by weekly
restimulation using peptide-pulsed spleen cells.
Production of recombinant RTA-peptide fusions
DNAs encoding nNP-RTA and nNP-6K A chain proteins were
constructed by PCR mutagenesis using synthetic oligonucleotides
containing the mutations of choice in an overall PCR strategy as
described previously (7). This resulted in the fusion of
the NP sequence (encoding residues 366374 of the influenza
nucleoprotein) to the mature 5' termini of two RTA cDNA variants
encoding RTAR180H (18) and
RTA6K-R180H (19), respectively. The
claNP-RTA was constructed by inserting annealed complementary
oligonucleotides encoding the NP sequence into the ClaI
restriction site (at base position +338) in the RTA cDNA
(20). PCR-directed mutagenesis was used, as described
previously (7), to introduce arginyl point mutations into
the DNA coding for the nNP-6K RTA variant. All variants were fully
sequenced before expression and fusion constructs were then ligated
into a pUC18 vector modified to optimize RTA expression in
Escherichia coli (21).
Expression and purification of RTA fusions and reassociation into
ricin
Recombinant RTA fusions were expressed in a 1-L culture of
E. coli JM101 cells and purified by cation exchange
chromatography as previously described (18). The purified
fusions were reassociated to plant-derived ricin B chain (RTB; Vector
Laboratories, Burlingame, CA) by dialysis against PBS, following mixing
100 µg of each chain in the presence of the reducing agent 2-ME (2%
in PBS containing 100 mM lactose), as described previously
(22).
Ag presentation assays
Cells were pulsed with ricin fusions at the concentrations and
durations stated in the text. Target cells (2 x
106) were radiolabeled with 100 µCi of
51Cr for 2 h. Target cells were infected
with 5 PFU/cell of recombinant vaccinia virus expressing the relevant
viral protein for 90 min before labeling, or pulsed with 500 nM free
peptide (NP or gp33) for 2 h during the 51Cr
labeling. Labeled cells were plated at 104
cells/well and CTL were mixed with the targets at the E:T ratios
shown in the figures. Supernatants were harvested after 4 h. The
percentage of specific lysis was calculated as described previously
(7). To study the effect of various inhibitors and
reagents on the processing, cells were treated at the concentrations
and durations stated in the figures before performing the Ag
presentation assay.
Immunoprecipitations
RMA-S cells (20 x 106) were treated
with toxin (500 ng/ml) or mock-treated for 90 min at 37°C. Cells were
washed and starved for 60 min in 1 ml methionine-free RPMI 1640 medium
supplemented with 10% (v/v) FCS, 2 mM L-glutamine, 100
U/ml penicillin, and 100 µg/ml streptomycin at 37°C. They were then
metabolically labeled in 500 µl fresh methionine-free RPMI 1640
medium with L-[35S]methionine
(Amersham Pharmacia Biotech, Little Chalfont, U.K.) at a concentration
of 10 µCi/µl for 30 min at 37°C. Cells were lysed for 30 min on
ice in lysis buffer (50 mM Tris-HCl (pH 7.5) containing 1% (v/v)
Triton X-100 and 150 mM NaCl), and their nuclei were removed by
centrifugation for 15 min at 15,000 x g. For aliquots
to be lysed in the presence of stabilizing peptide, 10 µM
NP366374 was added at this stage. Cell lysates
were precleared overnight with 100 µl fixed Staphylococcus
aureus (Sigma) in PBS, then incubated with the B22
H-2Db conformational-specific Ab
(23) for 90 min before adding a small volume of protein
A-Sepharose for 45 min. All steps were performed at 4°C.
Immunoprecipitates were washed three times in lysis buffer and
subjected to Endo-
-N-glucosaminidose H (EndoH) digestion
overnight (see EndoH treatment) and resolved by
SDS-PAGE. Fluorographs were analyzed using a densitometer and
ImageQuant software (Molecular Dynamics, Sunnyvale, CA).
EndoH treatment
EndoH (Boehringer Mannheim, Indianapolis, IN) digestions were
performed by resuspending the pellets of protein A-Sepharose-bound
immunoprecipitates in 30 µl of 50 mM sodium citrate buffer (pH 5.5)
containing 0.2% SDS and heating to 95°C for 5 min before addition of
3 U (1.5 µl) of EndoH and incubation overnight at 37°C.
ER import assays
In vitro transcription of mRNAs and translation in rabbit
reticylocyte lysate (Promega, Madison, WI), in the presence or absence
of canine pancreatic microsomes, was performed as described
(24). Cotranslational import into microsomes and cleavage
by signal peptidase was determined after a 40-min posttranslational
treatment with 0.5 mg/ml proteinase K on ice (± 1% Nonidet P-40) and
visualizing bands by SDS-PAGE and fluorography.
 |
Results
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Ricin is a heterodimeric protein composed of two subunits, RTA and
RTB, that are normally disulfide bonded together. RTA has a
rRNA-specific N-glycosidase activity and is therefore
capable of inactivating cytosolic ribosomes should it encounter them,
while RTB is a galactose-specific lectin able to bind the holotoxin to
the target cell surface before endocytic uptake. We created genetic
fusions of DNA for the H-2Db-restricted peptides,
influenza nucleoprotein NP 366374 peptide (ASNENMDAM)
(25), or LCMV glycoprotein 1 (gp33) peptide, residues
3341 (KAVYNFATC) (25), to either the 5' end of the
cDNA encoding mature RTA (20) or spliced into an internal
ClaI site that permits exposure on the toxin surface
(26) or onto the 3'end (data not shown). These proteins
were expressed in and purified from E. coli as described
previously (18) before being reassociated with
glycosylated RTB purified from Ricinus communis
(22). For most experiments, a catalytic site mutant
(R180H) was used (18), and in one case a variant NP-ricin
fusion was made using a lysine-enriched RTAR180H
that is known to be more effectively degraded by proteasomes
(19). The NP fusion proteins are schematically depicted in
Fig. 1
.

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FIGURE 1. Schematic representation of the ricin fusion proteins. A MHC class
I-restricted antigenic peptide (NP) corresponding to residues 366374
(ASNENMDAM) from the influenza nucleoprotein was made as a set of
recombinant fusions with RTA. Three different fusion proteins are
shown, in all of which RTA contained an active site mutation (R180H).
The purified recombinant fusions were associated to plant-derived
RTB.
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Ricin was able to deliver NP peptide to MC57 cells for processing and
presentation by MHC class I molecules, because cells treated with
nNP-ricin or nNP6K-ricin were sensitized for specific lysis by
NP366374-restricted CTL, but not by the
irrelevant gp33-restricted CTL (Fig. 2
).
Controls show that these cells were able to process influenza
nucleoprotein expressed in the cytosol from a vaccinia virus construct
(VacNP). However, for both nNP-ricin or nNP6K-ricin, significant lysis
was observed only in toxin-pulsed MC57 cells following pretreatment for
48 h with IFN-
. Such treatment is known to up-regulate gene
expression of MHC class I proteins, several proteasomal subunits, and
the proteasome regulator PA28 (27). The fact that IFN-
is not known to up-regulate extracellular proteases and that
presentation of the NP peptide was only seen after IFN-
treatment of
MC57 cells suggests that extracellular processing of toxin is not
occurring. Supporting this conclusion, peptide presentation was blocked
when the nNP-ricin was prevented from binding and subsequently entering
cells by pretreating the toxin with 100 mM lactose (data not shown).
Interestingly, both the claNP-ricin fusion (Fig. 2
) and a C-terminally
located NP-ricin fusion (data not shown) failed to promote specific
lysis. Therefore, it was decided to focus on the N-terminally located
NP-ricin fusions.

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FIGURE 2. Ricin-mediated delivery of the NP366374 results in
specific lysis by NP-restricted CTL. NP or gp33-specific CTL were
tested for their ability to lyse target cells treated as indicated
along the x-axis. MC57 target cells, with or without
IFN- , were pulsed with control peptides, infected with vaccinia
virus-expressing full-length Ags, or treated with the NP-ricin fusions.
The percentage of specific lysis at three E:T ratios is shown. The data
are representative of at least two similar experiments.
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Surprisingly, however, peptide presentation was not dependent on active
proteasomes (Fig. 3
). When MC57 cells
were treated for 24 h with
clasto-lactacystin-
-lactone, such that processing and
presentation of NP peptides from vaccinia-expressed nucleoprotein was
significantly reduced (Fig. 3
), surface presentation still occurred
under these conditions when cells were challenged with free NP peptide
or the fusions nNP-ricin or nNP-6K-ricin. We also observed that the
extent of specific lysis between nNP-ricin and the normally more
degradable nNP-6K-ricin, in either the presence or absence of
proteasome inhibition, was consistently similar. Most strikingly of
all, processing and presentation of ricin-delivered NP was independent
of functional TAP (Fig. 4
). The
TAP-deficient RMA-S cells were significantly lysed when ricin delivered
NP peptide via endocytosis. Furthermore, this presentation was not
dependent on IFN-
(Fig. 4
). Taken together, these data suggest that
the processing of NP366374 from ricin was
occurring within the endomembrane system of the cell rather than at the
cell surface or within the cytosol.

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FIGURE 4. Ricin-dependent peptide presentation is more efficient in TAP-deficient
RMA-S cells. MC57, RMA, and RMA-S cells were incubated with nNP-ricin
or nNP-6K (50 ng/ml) for 16 h. NP-specific CTL were tested for
their ability to lyse target cells treated as indicated along the
x-axis. Controls include cells pulsed with free peptide
from either influenza nucleoprotein (NP pep) or LCMV glycoprotein (gp33
pep). The percentage of lysis at three E:T ratios is shown. The data
are representative of at least two similar experiments.
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It was of interest to locate the site of peptide processing and MHC
class I loading within the endomembrane system. Ricin is a promiscuous
toxin that, on its journey, can harmlessly enter all compartments of
the endosomal/lysosomal/trans-Golgi network system of the
cell. Therefore, it is conceivable that ricin entering the endosomal
system becomes processed by endoprotease(s) to release the NP peptide
such that it is able to interact with either surface recycling MHC
class I proteins (28) or with MHC class I complexes that
are being secreted. To investigate the possibility of ricin fusions
being processed in the early endocytic pathway, we first studied the
effect of inhibiting the ubiquitous furin-related serine
proteases of the subtilisin family using the competitor inhibitor
decanoyl-Arg-Val-Lys-Arg-chloromethylketone-CMK. Members of the furin
family are frequently involved in activating proproteins in the late
secretory pathway, and they have been shown able generate class I
peptides (29, 30, 31). However, the furin inhibitor did not
block the processing of the N-terminally placed NP peptide from ricin
(Fig. 5
A). Likewise,
presentation was not sensitive to the disruption of endosome/lysosome
pH by the lysomotropic amine, chloroquine, which affects furin activity
(32) and which would be predicted to indirectly reduce the
proteolysis normally occurring within acidic compartments (Fig. 5
B). To further investigate any processing in the early
endocytic pathway, and to specifically rule out presentation by surface
recycling MHC class I proteins, we studied the effect of disrupting
both anterograde and retrograde traffic in the Golgi stack with BFA.
Such treatment would prevent the toxin moving along its productive
entry pathway to the ER and concomitantly block exocytosis of newly
assembled MHC class I complexes from the ER. Fig. 5
C shows
that surface presentation of the NP peptide delivered into cells by
ricin is extremely sensitive to BFA. These data support the idea that
processing and loading were occurring in the early secretory
pathway.

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FIGURE 5. Presentation of toxin-derived NP peptide is both furin and chloroquine
independent but is reliant on a functional secretory pathway. RMA-S
cells (6 x 106) were incubated with nNP-6K ricin
(nNP-6K) at 500 ng/ml for 2 h, following a 2-h pretreatment with
increasing concentrations of the specific furin inhibitor
decanoyl-Arg-Val-Lys-Arg-chloromethylketone (A),
chloroquine (B), or BFA (C). Controls
include RMA-S cells pretreated with the various inhibitors for 2
h, then pulsed with free peptide from either influenza nucleoprotein
(NP pep) or LCMV glycoprotein (gp33 pep). The percentage of lysis is
shown for three E:T ratios. The data are representative of at least two
similar experiments.
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To more precisely investigate whether peptide processed from ricin
interacted with MHC proteins as they were being transported through the
early secretory pathway, or whether it interacted to stabilize MHC
complexes in the ER, we looked at the loading of newly synthesized,
empty MHC class I H chains (Fig. 6
). This
was achieved by radiolabeling RMA-S cells with a short pulse of
[35S]methionine after treating cells with or
without ricin or the ricin-peptide fusion, followed by detergent lysis,
immunoprecipitation of any peptide-loaded H-2Db
complexes using the conformation-specific mAb B22, and EndoH treatment.
Samples were compared with non-EndoH-treated controls. One hundred
percent relative loading was seen when cell lysates were incubated with
free NP peptide, while the background level of correctly assembled
complexes was
10%. The pulse-labeled MHC H chains were EndoH
sensitive as judged by the faster migration of bands compared with a
non-EndoH-treated sample (Fig. 6
A). When cells were
pretreated with nNP-6K ricin, the amount of immunoprecipitable
peptide-loaded MHC complexes increased by
180% relative to
untreated or ricin-only controls (Fig. 6
, B and
C). A structural-based algorithm (33) used to
predict any H-2Db MHC class I epitopes present in
the nNP-6K ricin primary sequence identified a total of 23 putative
epitopes. Of these only 12 had an energy score to indicate good binding
interactions, with the NP epitope ranked first. Indeed, as shown in
Fig. 6
, B and C, there was no increase above the
background level in the loading of newly synthesized MHC proteins when
the 6K-ricin lacking the NP epitope was tested. Collectively, the
experimental and theoretical data indicated that the increased loading
seen in TAP-negative RMA-S cells of newly synthesized, EndoH-sensitive
MHC proteins could be attributed solely to the presence of the NP
epitope within the ricin construct, rather than to processing and
loading of internal RTA peptides. The significant increase in loading
of newly synthesized, EndoH-sensitive MHC proteins when TAP-deficient
cells were treated with nNP-ricin supported the idea that the ricin
fusions were being processed in the ER or cis-Golgi.

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FIGURE 6. Toxin-derived NP peptide stabilizes newly synthesized H-2Db
molecules. A, RMA-S cells (20 x 106)
were incubated for 90 min with medium alone (lanes
1-3), nNP-6K ricin (nNP-6K; lanes
4 and 5), or 6K ricin (lanes 6
and 7) at 500 ng/ml. Following radioactive labeling for
30 min, cell lysates were precleared in the absence (lanes
3, 5, and 7) or presence
(lanes 1, 2, 4, and
6) of a saturating concentration (20 µM) of a
stabilizing influenza nucleoprotein peptide (NP pep). Peptide-loaded
H-2Db molecules were recovered by immunoprecipitation using
the conformation-specific Ab B-22 that detected only loaded H chains,
and immunoprecipitates were treated with EndoH (lanes
2-7) or were left untreated (lane
1). B, Resolved bands were quantified and
expressed as the percentage of relative loading of newly synthesized
H-2Db molecules. Integrated optical band intensities,
expressed as a percentage of radiolabeled unstabilized to radiolabeled
stabilized immunoprecipitations, were taken as a measure of the loading
of peptide onto newly synthesized H-2Db molecules.
C, The percentage of increase in loading upon incubation
with nNP-6K, compared with the average of the mock-treated and the 6K
ricin-treated controls, is shown. The data are means of duplicate
samples and are representative of two similar experiments.
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Interestingly, examination of the N terminus of the nNP-RTA revealed
the existence of two potential signal peptidase cleavage sites that fit
the consensus defined by von Heijne et al. (34) (Fig. 7
A) but that are never used in
the biosynthesis of the toxin in the producing plant
(35). Theoretical prediction analysis indicated
that the second site (AGA
TV) would be a more effective cleavage site
than the first (IFP
KQ). When these sequences were engineered into
the secretory protein preprolactin to replace the natural preprolactin
signal peptidase cleavage site, they were indeed able to serve as
cleavage sites during in vitro translation in the presence of canine
microsomal membranes. After cotranslational import, a posttranslational
incubation with protease showed that the lower, signal peptide-cleaved
band was protected within the vesicles, unless the protease was added
together with a membrane-disrupting detergent (Fig. 7
B). As
predicted, the first site, where incomplete cleavage was seen, was not
as effective a substrate as the second site (Fig. 7
B, *).
To exclude the possibility that simply any sequence from the N terminus
of RTA can serve to provide a signal peptidase cleavage site, a stretch
of residues between the two putative cleavage sites (PIINF) was also
engineered into preprolactin. Because the translation product in this
case was resistant to proteinase K (i.e., protected within the membrane
vesicles) but remained a full-length protein, we conclude that the
sequence was not able to provide a cleavage site for signal peptidase
(Fig. 7
B).

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FIGURE 7. Sites in the first 20 residues of mature RTA can function as substrates
for signal peptidase. A, The first 20 amino acids of
mature RTA contain two potential signal peptidase cleavage sites (in
boldface and underlined, where arrowheads indicate potential cleavage
sites). These sequences, along with a control sequence (boldface only),
were inserted into preprolactin (ppl) to replace its natural signal
peptide cleavage site. B, In vitro transcripts encoding
preprolactin wild type, preprolactin-IFPKQ, preprolactin-PIINF, and
preprolactin-AGATV were translated in vitro in rabbit reticulocyte
lysates in the absence or presence of canine pancreas microsomes (RMs).
Some samples were then treated with proteinase K (PrK) in the absence
or presence of the detergent Nonidet P-40 (NP-40) as indicated.
Translation products were separated by SDS-PAGE and visualized by
fluorography.
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Signal peptidase is the best-characterized endoprotease within the ER.
To investigate any Ag processing function of this protease, the two
potential cleavage sites within the nNP-6K ricin were separately
rendered noncleavable by replacing the -3 and -1 positions with
arginine. As described previously (36), such changes would
preclude processing by signal peptidase. Indeed, replacement of the
preprolactin cleavage site with either RFRKQ or RGRTV, followed by in
vitro translation in the presence of canine microsomal membrane,
confirmed that such substitutions prevented cleavage (data not shown).
Therefore, these mutant proteins carrying the NP peptide were purified
from E. coli. They were shown to be structurally sound
because the modified RTAs readily reassociated with RTB, and when the
catalytically active RTA equivalent was used the reassembled holotoxins
exhibited native potency (IC50, 0.015 nM)
(19). This indicated that the primary structural changes
at the N terminus of RTA did not perturb toxin trafficking to the
ER.
To test that signal peptidase could act posttranslationally to process
peptides appended to the N terminus of RTA, we added the purified
mutant proteins described above to TAP-deficient cells and looked for
peptide presentation. We observed that surface presentation of the NP
peptide did not occur when the first of the predicted signal peptidase
sites (IFP
KQ) was deliberately disrupted by substitution with
arginine (Fig. 8
). By contrast, when the
second predicted cleavage site (AGA
TV) was mutated to prevent signal
peptidase cleavage, presentation was reproducibly higher than that seen
with the control (nonmutated) nNP-ricin (Fig. 8
; for a possible
explanation, see Discussion). These findings support the
idea that CD8+ peptide epitopes positioned at the
N terminus of RTA may be cleaved from the endocytosed toxin
posttranslationally by signal peptidase (or an undetermined protease
with signal peptidase-like activity), loaded onto MHC class I proteins
and subsequently presented, only when the sequence IFP
KQ is present
at the start of mature RTA. Signal peptidase processing at this site
would release the nine-residue N-terminal NP epitope with a short
C-terminal extension of three residues of mature RTA.

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FIGURE 8. Signal peptidase is involved in Ag processing from ricin-mediated
delivery. RMA-S cells (6 x 106) were incubated with
500 ng/ml nNP-6K ricin (nNP-6K), nNP(RFRKQ)-6K ricin (nNP-RFRKQ-6K), or
nNP(RGRTV)-6K ricin (nNP-RGRTV-6K) for 16 h. NP-specific CTL were
tested for their ability to lyse target cells treated as indicated
along the x-axis. Control RMA-S cells were pulsed with
free peptide from either influenza nucleoprotein (NP pep) or LCMV
glycoprotein (gp33 pep). The percentage of lysis at three E:T ratios is
shown. The data are representative of at least two similar
experiments.
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To test whether such processing is confined to one particular peptide
at the N terminus of RTA, we tested an alternative peptide. When the
H-2Db-restricted gp33 peptide from LCMV was
positioned at the N terminus of RTA to generate gp33-ricin, specific
lysis by gp33-specific CTL was observed using the standard assay with
RMAS target cells (Fig. 9
). The
possibility that ricin may provide a signal peptidase site to allow the
processing of N-terminally positioned Ags is addressed in
Discussion.

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FIGURE 9. Ricin-mediated delivery and TAP-independent surface presentation is not
epitope specific. RMA-S cells (6 x 106) were
incubated with either 500 ng/ml nNP-6K ricin (nNP-6K) or 500 ng/ml
gp33-6K ricin (gp33-6K) for 16 h. NP- and gp33-specific CTL were
tested for their ability to lyse target cells treated as indicated
along the x-axis. Control RMA-S cells were pulsed with
free peptide from either influenza nucleoprotein (NP pep) or LCMV
glycoprotein (gp33 pep). The percentage of lysis is shown for three E:T
ratios. The data are representative of at least two similar
experiments.
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 |
Discussion
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Ricin is an opportunistic toxin that can promiscuously bind to
cell surfaces via the galactoside-binding RTB and be internalized by
endocytosis using a multiplicity of pathways to reach endosomes,
lysosomes, the Golgi complex, and the ER lumen (37). Only
the fraction of toxin that reaches the ER will retrotranslocate to the
cytosol (14), where a small proportion evades proteasomal
degradation to inactivate ribosomes (19). We reasoned
that, because the productive intoxication pathway involves toxin
dislocation from the ER as a pseudo-substrate of the ERAD pathway and
an encounter with the ubiquitin/proteasome machinery, it may be
possible to use ricin to deliver Ags directly into the MHC class I
processing pathway. Our data now show that nanomolar amounts of a
catalytically crippled form of ricin can indeed be used as a delivery
vehicle in vitro. However, only peptides genetically fused at the N
terminus of RTA were successfully processed and presented (Fig. 2
), and
processing was not dependent on active proteasomes (Fig. 3
). Indeed,
CTL-induced lysis was most efficient when ricin fusions were
internalized by cells of a TAP-deficient cell line in the absence of
IFN-
(Fig. 4
). So, although ricin can retrotranslocate from the ER
of TAP-deficient cells (known because the native version can kill RMA-S
cells (data not shown)) processing of the fused peptide from nNP-ricin
is clearly not dependent on this step or other downstream events within
the cytosol.
It is now recognized that the classical pathway for the presentation of
endogenous antigenic peptides is not the only route by which peptides
can reach MHC class I proteins. Indeed, processing of Ag and loading
onto MHC class I can be quite flexible. For example, cross-presentation
of exogenous Ag may occur. This may happen in some cell lines when
exogenous Ags are internalized to intersect the classical processing
pathway in the cytosol after release from endosomes or other
intracellular compartments, or following endosomal degradation and
recycling of peptide to bind cell surface class I molecules
(38). However, raising endosomal pH to reduce proteolytic
activity or blocking furin-related endoproteases did not prevent
peptide presentation (Fig. 5
, A and B).
Furthermore, because protein traffic through recycling endosomes is
known not to be affected by BFA, the effect of this drug in blocking
the presentation of peptide delivered via the ricin carrier (Fig. 5
C) would again preclude cross-presentation events in this
particular case.
Class I Ag processing in the cytosol is normally mediated by
proteasomes (for an example, see Ref. 39), although this
may not be an absolute requirement (40, 41). In this work
we have shown that peptide processing from ricin and surface
presentation of peptide can occur in cells where proteasomes are
inhibited. Because presentation can also occur when TAP is absent,
these data suggest that processing is occurring outside the cytosol.
Although peptide transport through TAP is the optimal route by which
peptides are loaded onto empty MHC proteins in the ER, it is now
recognized that a physical interaction with TAP is not required for
loading (42). Indeed, intracellular peptides can be
presented on the surface of TAP-negative cells after delivery to the ER
through Sec61 translocons via signal peptides (43, 44) or
following direct penetration of exogenous peptides into cell organelles
(45). Taken together, our data are consistent with
processing and loading within the secretory pathway.
Where in the secretory pathway could the processing occur? In addition
to the possibility of endosomal processing outlined above, Ag
processing may take place within the secretory pathway by unknown
exoproteases, or by endoproteases of the furin family, for example.
Furin is a member of the subtilisin family of serine proteases that is
found predominantly in the TGN from where it cycles via the cell
surface. The TAP-independent generation of MHC class I peptides by
furin has been observed when placed at the C terminus of the hepatitis
B virus core protein (29, 30, 31). However, the specific furin
inhibitor we used had no effect, and the lack of putative furin sites
toward the N terminus of RTA would argue against a role for this
protease in the release of epitopes joined to the N terminus of RTA.
There are, of course, numerous other endoproteases within the late
secretory pathway, most being cell type specific for the activation of
proproteins such as hormones, growth factors, extracellular enzymes,
etc. In our study, we saw a significant increase in peptide-stabilized
MHC complexes that were still EndoH sensitive when TAP-deficient cells
are treated with the toxin fusions (Fig. 6
). This strongly suggested
that loading was occurring within the ER lumen itself. If this were
happening it would clearly make sense for the peptides to be
proteolytically released within this compartment, in the vicinity of
empty class I H chains. Indeed, this may help explain the
IFN-
-independent processing and presentation in TAP-deficient RMA-S
cells (Fig. 4
). Treatment of RMA-S cells with IFN-
would lead to an
increase in MHC class I proteins in the ER lumen (27).
However, such an increase would not be predicted to enhance
presentation of the toxin-delivered NP peptide because, in the absence
of other peptides entering from the cytosol, there is always a high
concentration of available class I proteins within the ER. Conversely,
in RMA cells, an IFN-
-mediated increase in class I molecules within
the ER would permit increased loading of the processed NP peptide in
the face of competition from other peptides entering via TAP.
The ER lumen is a major site of protein folding in an environment not
compatible with protein degradation events. Therefore, the consequent
likely dearth of endoproteases within the ER would appear to make
endoproteolytic release of peptides from ricin unlikely. Nevertheless,
some endoproteases do exist within the ER membrane and lumen (e.g.,
signal peptide peptidase (46) and the chaperones ERp60 and
ERp72 (47, 48)). The best-characterized of these is the
signal peptidase complex that cleaves short ER-targeting peptide
sequences from newly synthesized polypeptides. However, in addition to
the removal of signal peptides, this enzyme may also be responsible for
the processing the H-2a subunit of the mammalian
asialoglycoprotein receptor (49) and in the degradation of
aberrant membrane proteins in yeast (50).
Close examination of the mature N terminus of RTA revealed two
potential signal peptidase cleavage sites,
IFP+3
KQ and AGA+16
TV,
although it should be noted that neither is used in the ricin-producing
plant (35). According to theoretical predictions
(34), the second of these sites would be the more
effective substrate. Indeed, when the natural signal peptidase cleavage
site of a preprolactin reporter was substituted with either of these
sequences and tested in a translation system supplemented with
ER-derived microsomes, it was clear that they could serve as substrates
for signal peptidase with the predicted efficiencies (Fig. 7
).
Furthermore, when the first of these sites was replaced with the
nonfunctional arginyl sequences in nNP-RTA, peptide presentation in
TAP-deficient cells was completely abolished (Fig. 8
). However, a
similar mutation of the second cleavage site in nNP-RTA, predicted to
be a more effective signal peptidase substrate, actually provoked an
increase in peptide presentation.
In the absence of a more extensive investigation we can only speculate
as to why this happens. We propose that, although N-terminal peptide
fusions to ricin are normally accessible to a signal peptidase-like
activity for the production of both peptides, it is somehow more
favorable to load only the shorter peptide of the two for subsequent
surface presentation. Cleavage at the first site would release a
peptide predicted to contain the nine-residue NP peptide with an
additional three residues at its C terminus (Fig. 7
). By contrast,
cleavage at the second site would generate a longer peptide (the
nine-residue peptide epitope with a 16-residue C-terminal extension of
the RTA sequence; Fig. 7
). This hypothesis is consistent with a need
for further processing to remove the C-terminal extensions, because we
consider it unlikely that 12- and 25-mer peptides generated by
signal peptidase would be presented at the cell surface. Although it is
known that the NP366374 nonamer with a
C-terminal extension of three residues can directly assemble with class
I molecules, this species has much faster off rates than the optimal
nonamer (51). Therefore, it is likely that another
enzyme(s) is involved, one that is only able to cut or trim the shorter
12-mer peptide to optimal size, possibly because the longer
peptide possesses a structure incompatible for further signal peptidase
cleavage and/or subsequent processing. In this scenario, successful
generation and loading of NP366374 would
normally be a competitive process. Abrogating cleavage at the second
site, as in nNP-(RGRTV)-6K (Fig. 9
), would in effect ensure the
production of only the shorter peptide, rather than a mixed population,
and thereby increase the opportunities for successful loading and
presentation.
Consistent with the hypothesis that extensive Ag presentation can occur
within the ER lumen, it has previously been shown that, in cells devoid
of TAP, the embedded NP366374 epitope within a
full-length, ER-targeted NP mutant that lacked N-linked
glycans was released for assembly with class I proteins
(52). However, a full-length glycosylated NP targeted to
the ER in an identical fashion was not capable of sensitizing
TAP-negative target cells for lysis (44). These results
strongly suggest that the tertiary conformation of polypeptides within
the ER lumen may influence the generation of MHC class I epitopes. It
should be noted that the longer peptide predicted to arise from the
ricin fusion carries a glycosylation sequon. Whether the longer peptide
becomes posttranslationally glycosylated (14) to similarly
preclude further processing, or whether its structure is simply
inappropriate for processing, remains unknown.
Although proteases are known to exist in the ER lumen (Refs.
46, 47, 48 and reviewed in Ref. 53), the exact
complement and role of resident carboxypeptidases, aminopeptidases, and
endoproteases in Ag processing is unclear. Where Ags have been
extensively processed in the ER (44), the enzyme(s)
responsible have not usually been identified. One ER endoprotease that
is known to be involved in the generation of HLA-E binding epitopes is
signal peptide peptidases (54). This enzyme cleaves
transmembrane signal peptides within their hydrophobic domain,
liberating the resulting N-terminal fragment to the cytosol
(46). However, the peptides we predict to arise upon
signal peptidase proteolysis in the present study appear neither
sufficiently hydrophobic nor membrane associated to serve as good
signal peptide peptidase substrates. Therefore, for the moment,
questions regarding the precise mechanism of posttranslational signal
peptidase cleavage of the N-terminal ricin fusions, any interplay
between the peptides generated, and the exact nature and sequence of
the processing steps remain unknown and are clearly beyond the scope of
the present study.
Signal peptidase has been previously speculated to posttranslationally
process the endogenous ER membrane protein JAW1, releasing fused
peptides for surface presentation by class I MHC (55).
However, functional evidence for the involvement of signal peptidase
was not presented in this study. By contrast, the data presented here
show that a protein, physiologically able to reach the ER lumen from
the exterior of the cell, can be processed there by signal peptidase or
a signal peptidase-like activity. Such processing may be coupled with
the protein disulfide isomerase-catalyzed unfolding that toxins appear
to require pretranslocation (56) and/or the
retrotranslocation process itself. By definition, the early stages of
the ERAD of ricin would occur in proximity to the dynamic,
bidirectional translocation machinery that contains, on its periphery,
signal peptidase. Further characterization of these events is now
required.
To check that these events were not limited to presentation of the NP
epitope, we created a similar N-terminal fusion of the T cell epitope
gp33 with RTA. This was also processed and presented in a
TAP-independent manner (Fig. 9
), in marked contrast to the
TAP-dependent presentation of gp33 from the LCMV glycoprotein
(57, 58). This finding supports a model of signal
peptidase processing within the sequence of mature RTA and suggests
that, provided the fused peptide did not cover the cleavage site, any
added peptide would be similarly processed.
Administration of ex vivo toxin-treated APCs to promote protective CTL
as part of a vaccination protocol remains an obvious long-term goal of
toxin exploitation. Of the toxins tested for such an application, only
pertussis toxin (8) and ricin (this study) appear able to
deliver peptides in a BFA-sensitive, TAP-independent manner. Although
the processing of an N-terminal peptide Ag borne by pertussis toxin
clearly occurred within the secretory pathway, the involvement of
signal peptidase or other ER protease, and the site of subsequent
peptide loading, were not demonstrated (8). The behavior
of the ricin vector is particularly striking. The strong
TAP-independent bias exhibited by this vehicle may pave the way for
developing disarmed ricin vectors directed solely against certain
TAP-negative tumors in vivo. Theoretically, it follows that
preferential TAP-independent presentation of a common viral epitope,
such as the influenza nucleoprotein NP peptide, by a TAP-deficient
tumor cell might allow tumor clearance by preexisting
viral-specific CTL.
 |
Acknowledgments
|
|---|
We thank Prof. Tim Elliott (University of Southampton, Southampton,
U.K.) and Prof. Eric Tartour (Institut Pasteur, Paris, France) for
helpful discussions.
 |
Footnotes
|
|---|
1 This work was supported by a Wellcome Trust Program Grant and a U.K. Biotechnology and Biological Sciences Research Council project grant (to L.M.R. and J.M.L.), a grant from the Wellcome Trust (to A.G.), and a grant from Cancer Research U.K. (to V.C.). 
2 Address correspondence and reprint requests to Dr. Lynne M. Roberts, Department of Biological Sciences, University of Warwick, Coventry CV4 7AL, U.K. E-mail address: lroberts{at}bio.warwick.ac.uk 
3 Abbreviations used in this paper: SLT1, Shiga-like toxin 1; ER, endoplasmic reticulum; ERAD, ER-associated protein degradation; EndoH, Endo-
-N-glucosaminidase H; RTA, ricin A chain; RTB, ricin B chain; BFA, brefeldin A; LCMV, lymphocytic choriomeningitis virus; NP, peptide 366374 of the influenza nucleoprotein; gp33, peptide 3341 of the LCMV glycoprotein. 
Received for publication January 17, 2002.
Accepted for publication April 29, 2002.
 |
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