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* Division of Research and Development, Boehringer Ingelheim Austria, Vienna, Austria; and
Medizinische Klinik, Johannes Gutenberg-Universität, Mainz, Germany
| Abstract |
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| Introduction |
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Diversity of tumors and Ag-loss escape mechanisms require that a multitude of Ags is used for vaccination (11). This need for novel Ags cannot be satisfied with the CTL-expression cloning method alone. Recent advances in high-throughput expression analysis (12) made it possible to explore the genetic differences between normal and malignant cells on a large scale. The identification of LAGE-1 was an important example which showed that such genetically based approaches can indeed yield valuable candidate tumor Ags (13). However, in contrast to the CTL-based approach, immunologic recognition of overexpressed products is not granted a priori. CD8+ T cells that would recognize self-Ags can be eliminated by thymic selection or silenced upon peripheral interactions. In vitro priming is an established method to assess whether the T cell repertoire of normal donors still contains cells that can respond to such putative Ags, as it was successfully shown, e.g., for telomerase (14) or for a number of melanoma Ags (15, 16).
We have compared transcripts from squamous cell lung cancer and normal lung tissue using differential display analysis, and a gene that was newly expressed in malignant cells was found to be identical to the Ca-activated chloride channel 2 (CLCA2) (U. König and W. Sommergruber, manuscript in preparation). Subsequent screens verified that expression of CLCA2 was consistently high on several cancer cell types, including squamous cell lung carcinoma, pancreatic carcinoma, esophagus carcinoma, whereas expression was low or undetectable in most normal tissues, such as heart, prostate, brain cortex, kidney, and others.
We have addressed the question of whether CLCA2 could be a useful immunogen using in vitro priming in combination with ELISPOT detection of reactive T cells. We have successfully generated reactive CD8+ T lines from multiple donors against HLA-A2-restricted epitopes. These T cells also recognized allogeneic tumor cells in an Ag-specific and HLA-restricted fashion. Moreover, the most active CLCA2-derived epitope, LLGNCLPTV, was also recognized by CD8+ T cells expanded independently from pancreatic carcinoma/T cell cocultures. These data identify CLCA2 as a potentially useful novel Ag for anti-tumor vaccination approaches.
| Materials and Methods |
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APCs and CD8+ cells were obtained from HLA-A*02011-positive healthy donors. Tumor cell lines MZ-PC-1, MZ-PC-2 (both pancreatic carcinomas; Ref. 17), MZ-LC-16 (lung carcinoma; a kind gift of Drs. S. Horn and W. Moersig, Department of Cardiothoracic and Vascular Surgery, University of Mainz, Mainz, Germany), SK29-MEL-1 (melanoma; Ref. 18), and COGA12 (colon cancer; a kind gift of Dr. E. Wagner, Boehringer Ingelheim Austria, Vienna, Austria) were maintained in RPMI 1640 supplemented with 10% heat-inactivated FCS, 2 mmol/L L-glutamine, 100 IU/ml penicillin, and 100 µg/ml streptomycin. All cell culture reagents were purchased from Life Technologies (Gaithersburg, MD).
Peptides
Peptides were synthesized using automated solid phase
techniques, purified by reversed phase-HPLC and their structures
were verified by mass spectrometry. In addition to the peptides listed
in Table I
, the HLA-A2 binding
peptide YMDGTMSQV (tyrosinase 369377; Ref. 18)
and the HLA-A1 binding peptide EADPTGHSY (MAGE-1 161169; Ref.
3) were tested. Peptides were obtained in lyophilized
form, dissolved in 100% DMSO at 40 mg/ml and a stock solution of 2
mg/ml was prepared by further dilution in PBS. The first four letters
of the peptide sequences are used as shorthand identification
throughout the manuscript.
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For the generation of dendritic cells (DCs; Refs.
19 and 20), PBMCs were isolated by density
gradient centrifugation on Lymphoprep gradients (Nycomed, Oslo,
Norway) and washed four times with Dulbeccos buffered saline.
CD8+ T cells were isolated using positive
immunomagnetic MicroBead selection (Miltenyi Biotec, Bergisch Gladbach,
Germany) and cryopreserved until used. The remaining cells were
resuspended in AIM-V (Life Technologies) supplemented with 1%
autologous plasma at a density of 5 x
106/ml and incubated in 6-well plates (Costar,
Cambridge, MA; 3 ml each well) for 60 min (37°C, 5%
CO2). After complete removal of the supernatant,
the adherent cells were cultured in AIM-V supplemented with 1%
autologous plasma, 1000 U/ml human rIL-4 and 1000 U/ml human rGM-CSF
(BD PharMingen, San Diego, CA) in 6-well plates. On days 3 and 5,
one-third of the supernatant was replaced by fresh DC medium. On day 6,
part of the nonadherent cells showing an immature phenotype in flow
cytometric analysis (lack of CD83 expression) was rinsed off and
cryopreserved. The adherent cells were resuspended in AIM-V
supplemented with 1% autologous plasma, 10 ng/ml IL-1
(BD
PharMingen), 10 ng/ml IL-6 (BD PharMingen), 10 ng/ml TNF-
(Boehringer Ingelheim Austria), and 1 µg/ml PGE2
(Sigma-Aldrich, St. Louis, MO) at a density of 1 x
106 cells/ml. On day 9, DCs of mature phenotype
(positive for CD83) were harvested and cryopreserved.
In vitro priming (IVP)
DCs from day 9 were thawed, loaded with various peptides at 100 µg/ml for 4 h at 37°C, and irradiated at 3300 rad. Cells were washed and resuspended in AIM-V supplemented with 5% AB serum (PAA Laboratories, Parker Ford, PA), 10 ng/ml IL-6, and 10 ng/ml IL-12 (both obtained from BD PharMingen) at a density of 1 x 105/ml. For each peptide, 3 x 106 cryopreserved CD8+ cells were added to 1 x 105 pulsed, irradiated DCs per well in a 24-well plate. After 7 days, CD8+ (1 x 106/well) cells were restimulated with irradiated peptide-pulsed DCs and cultured in AIM-V supplemented with 5% AB serum, 100 U/ml IL-2 (Proleukin; Chiron, Emeryville, CA) and 10 ng/ml IL-7 (BD PharMingen; Ref. 21).
ELISPOT assay for IFN-
ELISPOT assays were performed as previously described
(22) using capture mAb anti-human IFN-
(1-D1K;
Mabtech, Stockholm, Sweden) and detection biotinylated mAb
anti-human IFN-
(7-B6-1; Mabtech). Ten days after the last
stimulation, 1 x 104
IVP-CD8+ cells were incubated with 75,000
nonirradiated peptide-pulsed T2 stimulator cells. Control wells
contained IVP-CD8+ cells alone or
IVP-CD8+ cells in the presence of unloaded T2
cells. For HLA Ab-blocking experiments, tumor cell lines were
preincubated with either W6/32 (anti-HLA-I; Ref. 23)
or MA2.1 (anti-HLA-A2/-B17; Ref. 24) or B1.23.2
(anti-HLA-A/B; Ref. 25); a kind gift from Dr. F.
Lemonnier (Institut Pasteur, Paris, France) at 0.170.3 mg/ml for
1 h at 4°C, and then used as stimulator cells in the ELISPOT
assay. For transfection experiments, transiently transfected 293-EBNA
cells (Invitrogen, San Diego, CA) were used as stimulators. Spot
numbers were automatically determined with the use of a
computer-assisted video image analyzer (Zeiss-Kontron, Jena,
Germany).
Cytotoxicity assays
Cultured IVP-CD8+ T cells were tested for cytotoxic activity in a 2 h-europium release assay. Target cells (peptide pulsed DCs or T2 cells and tumor cells) were labeled according to the manufacturers recommendation. Briefly, 2 x 106 targets were incubated with fluorescence-enhancing ligand (BATDA; Wallac Oy, Turku, Finland) at 37°C, extensively washed with PBS and used at different E:T ratios (5000 targets/well). After 2-h incubation time at 37°C, supernatants were mixed with europium solution (Wallac Oy), and incubated at room temperature for 15 min. Finally, fluorescence was measured in a time-resolved fluorometer (1420 Victor; Wallac Oy). Percentage of specific release was calculated as follows: ((mean experimental release - mean spontaneous release)/(mean maximum release - mean spontaneous release)) x 100, where spontaneous release represents counts in supernatants from wells containing target cells in medium only, and maximum release represents counts in supernatants from wells containing target cells in medium supplemented with 1% NP40.
Plasmids and transfection
In the mammalian expression vector pVAX1 (Invitrogen), first, a pair of oligonucleotides was inserted that encode the adenovirus E3 19k-derived insertion sequence (26). A second pair of complementary oligonucleotides encoding for the epitopes was then inserted downstream of the E3 sequence. The recombinant vectors encode for the following products: ICNLKFVTLL (vector pE3_ICNL); KLLGNCLPTV (pE3_K/LLGN); SLQALKVTV (pE3_SLQA). The plasmids pCDNA3_HLAA2 and pCDNA3_tyrosinase have been described elsewhere (18). The FuGENE 6 lipid transfection reagent (Roche Diagnostic Systems, Somerville, NJ) was used at DNA-lipid compound ratios and incubation conditions suggested by the manufacturer. Briefly, 293-EBNA cells were seeded in 6-well plates the day before transfection; on the next day, cells were washed free of serum and the DNA-liposomal complex was added in RPMI 1640 without serum. After a 4-h incubation, FCS was added to a final concentration of 10%.
| Results |
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Three different computer programs were used to identify potential
HLA-A*02011-binding epitopes from the 943-aa long reading frame of
CLCA2. Two of them, available via Internet from the National Center for
Biotechnology Information
(http://bimas.dcrt.nih.gov/molbio/hla_bind/) and from the University
of Tübingen (http://www.uni-tuebingen.de/uni/kxi/) (27, 28), predict binding affinity and stability based on matrices
derived from known epitopes. These were complemented by our own
approach, in which the context in which a certain epitope was embedded
was closely analyzed. Whether a certain epitope was likely to be
processed and displayed or not was predicted. This forecast was then
given more weight when peptides were selected. Twenty-five peptides
listed in Table I
were thus selected; some of them were qualified as
promising candidates from all three prediction methods, but also others
favored by only one algorithm were included. Peptides were synthesized
and tested for their binding activities toward the restricting
HLA-A*02011 allele by a T2 stabilization assay
(29). The tyrosinase-derived peptide YMDGTMSQV served as
positive control and the HLA-A1-binding peptide EADPTGHSY (MAGE-1)
served as negative control. Four CLCA2 peptides showed
concentration-dependent stabilization (Fig. 1
): IMFM (position 240), KLLG (424), LLGN
(425), and SLQA (585). The peptides ILNA (635) and QIVE (341) had
minimally promoted HLA-A2 stabilization and were thus qualified as weak
binders (Table I
).
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Published data suggest a direct relationship between the HLA
binding affinity of a peptide and its immunogenicity (30).
Thus only peptides that bound above background to HLA-A*02011 in the T2
stabilization assay were tested in in vitro priming assays.
CD8+ T cells were magnetically purified from
healthy donors and cocultures with in vitro-maturated peptide-loaded
autologous DCs were set up. Only three of seven of the CLCA2-derived
peptides, KLLGN, LLGN, and SLQA, initiated expansions of
CD8+T cells in these initial cultures (Table I
,
last column). Most notably, two of the effective peptides,
LLGN and KLLG, displayed the highest binding affinity. On day 10 after
the third restimulation, the specificity of IVP responder T cells was
tested in ELISPOT assays (Fig. 2
). In
vitro priming using the peptides KLLGN, LLGN, and SLQA along with the
positive control peptide YMDG was then repeated with cells obtained
from several other healthy donors, and tested in a similar way on a
broad panel of target peptides (Fig. 3
).
Although there were considerable differences among donors, we were able
to expand LLGN- and KLLG-specific CD8+ T cells
without exception in all cases. Moreover, these LLGN- and KLLG-specific
cells were cross-reacting (Fig. 3
, two upper rows).
Reactivity of CD8+ T cells primed with SLQA was
less apparent, but their specificity was still significant. Raising
YMDG-specific CD8+ T cells was successful in
three of four donors (Fig. 3
).
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CLCA2-specific CD8+ T cells recognize allogeneic tumor cell lines
Next, we examined whether peptide-specific T cell lines could recognize selected tumor cell lines. K562 cells expressed HLA-A*02011 after stable transfection. SK29-MEL-1 and MZ-PC-2 carried the HLA-A*02011 allele as determined by DNA sequencing. MZ-PC-1 and MZ-LC-16 were serologically HLA-A2-positive. HLA-A2 surface expression was verified by FACS staining. Expression of CLCA2 was verified by RT-PCR. These tumor cell lines were tested in ELISPOT assays for recognition. For the most productive T cell-allogeneic tumor interactions, specificity was tested by performing the assays in the presence of blocking mAbs specific for certain HLA alleles.
We found that each T cell line can recognize one or more allogeneic
tumor cell lines with varying efficiency (Fig. 7
). Also each tumor cell line that
expressed both HLA-A2 and CLCA2 was recognized by at least one T cell
line. Stimulator cells, that lack one of the two such as K562-A*02011
(no CLCA2 expression) or COGA12 (HLA-A2-negative), induced only
background reactivity. Recognition of the MZ-LC-16 lung carcinoma line
by SLQA-specific T cells was blocked by an HLA-A2-specific mAb (striped
bar, Fig. 7
a) but not by an Ab directed against the
HLA B and C alleles (data not shown).
Blockade with HLA-A2 mAb was again only partial when LLGN-specific T
cells were tested on the two pancreatic carcinoma lines MZ-PC-1 and
MZ-PC-2 (striped bars, Fig. 7
c). The pan-class I mAb W6/32
blocked recognition in all combinations (data not shown). These data
indicated that tumor cells were recognized in an HLA-A2-restricted
fashion.
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In search of novel tumor Ags also other methods besides the
genetic approach that yielded CLCA2 were tried. The MZ-PC-2 pancreatic
carcinoma line had been stably transfected to express CD80. Cocultures
of this cell line with completely or partially matched allogeneic
CD8+ T cells were then performed. Successfully
expanded T cell cultures that originated from such experiments were
then also tested for recognition of T2 cells loaded with peptides that
were derived from various putative pancreas tumor Ag candidates. The
tested peptides included predicted epitopes of CLCA2. Compared with the
average spot number induced by these peptides, reactivity against LLGN
was higher at a statistical significance of p < 0.001
(Fig. 10
).
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| Discussion |
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Using extensive genetic screening methods, we have previously identified a transcript, markedly overexpressed in a number of tumors, that was identical to the CLCA2. CLCA2 was predicted to contain five transmembrane domains with a large amino-terminal extracellular domain, and was found to function as a calcium-regulated outwardly rectifying anion channel. This molecule is also expressed in normal trachea and apparently in mammary gland epithelium (32), and qualifies thus as a "self" Ag. Furthermore, a mouse and a bovine homologue were implicated to play a role in lung metastasis formation (33). Although its relevance for malignant cells is unclear at this time, fast proliferation and altered environment of tumors may be connected to its higher expression in lung squamous cell carcinomas and tumors of the gastrointestinal tract (U. König and W. Sommergruber, manuscript in preparation).
The present study reports that the CLCA2 gene encodes antigenic epitopes that can be recognized by CD8+ T cells. From a pool of peptides that were selected by computer algorithms a small subset that bound to HLA-A2 was selected. Although binding affinity of peptides generally correlates well with their immunogenicity (30), melanoma-derived tumor Ag peptides often display only intermediate affinity (16, 34). We have taken the tyrosinase-derived YMDG peptide as a positive control throughout the experiments, because of its high binding affinity, and also because successful in vitro priming with this peptide has been demonstrated (35). Compared with YMDG, the KLLG and LLGN peptides qualify as high-affinity, and the SLQA epitope as medium-affinity, binders. In vitro stimulation with these peptides repeatedly induced expansion of specific CD8+ T cells. In contrast to the KLLG, LLGN, and SLQA peptides, we were unable to raise specific T cells against the medium-affinity IMFQ epitope.
Peptide- and HLA-specificity of the expanded CD8+ T cells was confirmed by titration and Ab-blocking experiments. This indicates that despite potential tolerance or clonal deletion concerns, the T cell repertoire available in healthy donors would not preclude immunization against CLCA2.
Specificity of T cells was further confirmed in experiments where
stimulator cells were cotransfected with plasmids encoding for the
CLCA2-derived epitopes in addition to HLA-A2-encoding plasmids.
Plasmid-mediated expression of full-length CLCA2 was not successful.
This can be explained either by its function as a chloride channel or
by the complicated structure of the protein itself that includes
multiple hydrophobic domains. Notably, the KLLG/LLGN epitopes are
incorporated in such a hydrophobic putative transmembrane region. van
der Bruggen et al. (36) have identified a MAGE-3 epitope
that was recognized by T cells only when it was provided in a synthetic
peptide form, but not as a product of natural processing in tumor cells
(37). In sharp contrast to this case, our T cell lines
also recognized various HLA-A2+ and
CLCA2+ allogeneic tumor cell lines. This finding
is important, because it could indicate that the corresponding epitopes
might be processed and displayed on tumor cells. We also found that
tumor cell lines are recognized by the different T cell lines with
variable efficiency. For example, SK29-MEL-1 and MZ-PC-1 were better
recognized by LLGN-specific T cells, while SLQA-primed T cells reacted
best with the MZ-LC-16 lung carcinoma, although natural processing has
not yet been demonstrated. The variability in the efficiency of
recognition of the tumor cell lines is likely due to the different
sensitivity of the various T cell lines. Low or intermediate avidity is
not uncommon among in vitro primed and expanded T cells and may be a
result of the employed IVP protocol (38, 39).
Alternatively, variability in epitope processing and display among
tumor cells may contribute to the differential recognition of tumor
cells. Although HLA-A2 surface expression and CLCA2 expression were
similar on the tested tumor cells, it is very likely that from the
overlapping KLLG and LLGN epitopes only LLGN is produced. That LLGN,
but not KLLG, is the naturally produced variant was also suggested by
the fact that cells transfected with the vector that was encoding the
common K/LLGN fragment were recognized by the LLGN-primed cells (Fig. 6
), but only marginally provoked reactivity from KLLG-primed cells
(data not shown). Differential reactivity was also seen with SK29-MEL-1
cells (Fig. 6
): they were recognized by LLGN-, but not by KLLG-, primed
T cells. However, after synthetic KLLG peptide was exogenously loaded
onto the SK29-MEL-1 line, the cells turned successively into a potent
target in a dose-dependent manner for KLLG-primed cells (data not
shown).
The preeminent role of the CLCA2-derived peptide LLGN was also supported by results from a different approach: T cells from cocultures with the pancreatic carcinoma cell line MZ-PC-2 were found to specifically recognize this peptide. These data indicate that peptides derived from the CLCA2 protein are displayed in a form that can be recognized by T cells and thus CLCA2-expressing tumor cells can be targets of Ag-specific immunotherapy.
Precursors against CLCA2-derived epitopes could not be detected in ex vivo peripheral blood CD8+ T cells isolated from healthy HLA-A*0201+ donors. Specific T cell precursors against other tumor Ags, e.g. MAGE-3 and tyrosinase, are also generally rare, and only for MELAN-A were specific T cells readily found (40, 41). Furthermore, absence of tumor Ag-specific T cells in the peripheral blood, even if the Ag is a self-protein, does not necessarily reflect the complete absence of such cells. Indeed, in close spatial association with tumors among tumor-infiltrating lymphocytes, but also in lymph nodes, it has repeatedly been possible to identify T cells specific for self tumor Ags (6, 42).
Taken together, our data indicate that a T cell response can be evoked against the CLCA2 protein. Although our analysis did not include all possible HLA-A*0201-restricted peptides, nor was it extended to other histocompatibility alleles, one can assume that additional epitopes restricted by HLA class I or class II may be contained in CLCA2.
Identification of novel functional tumor Ags is a prerequisite for effective anti-tumor immunotherapies. As CLCA2 was found to be expressed on a broad variety of tumors, including gastrointestinal and lung cancers, results from this study may contribute to future vaccination protocols.
| Acknowledgments |
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| Footnotes |
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2 Abbreviations used in this paper: TAA, tumor-associated Ag; CLCA2, calcium-activated chloride channel 2; DC, dendritic cells; IVP, in vitro priming. ![]()
Received for publication July 13, 2001. Accepted for publication April 22, 2002.
| References |
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spots in response to peptide antigens. J. Immunol. Methods 203:141.[Medline]
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