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The Journal of Immunology, 2002, 168: 3520-3526.
Copyright © 2002 by The American Association of Immunologists

Reduced Expression of Nuclear Cyclic Adenosine 5'-Monophospate Response Element-Binding Proteins and IFN-{gamma} Promoter Function in Disease Due to an Intracellular Pathogen1

Buka Samten§, Paritosh Ghosh, Ae-Kyung Yi||, Stephen E. Weis#, David L. Lakey*,{dagger},§, Rivkah Gonsky**, Usha Pendurthi{ddagger}, Benjamin Wizel{dagger},§, Yueru Zhang§, Ming Zhang§, Jianhua Gong§, Marilyn Fernandez{dagger}{dagger}, Hassan Safi§, Ramakrishna Vankayalapati§, Howard A. Young* and Peter F. Barnes2,*,{dagger},§

Departments of * Microbiology and Immunology, {dagger} Medicine, and {ddagger} Biochemistry, and § Center for Pulmonary and Infectious Disease Control, University of Texas Health Center, Tyler, TX 75708; National Institute of Aging, National Institutes of Health, Baltimore, MD 21224; || Crippled Children’s Foundation Research Center, Le Bonheur Children’s Hospital, and Department of Pediatrics, University of Tennessee Health Science Center, Memphis, TN 38103; # Department of Internal Medicine, University of North Texas Health Sciences Center, Fort Worth, TX 76107; ** Inflammatory Bowel Disease Research Center, Cedars-Sinai Medical Center, Los Angeles, CA 90048; {dagger}{dagger} Department of Immunology and Microbiology, University of Miami School of Medicine, Miami, FL 33124; and * Laboratory of Experimental Immunology, National Cancer Institute at Frederick, Frederick, MD 21702


    Abstract
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 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Mycobacterium tuberculosis-induced IFN-{gamma} protein and mRNA expression have been shown to be reduced in tuberculosis patients, compared with healthy tuberculin reactors. To determine whether this decrease was associated with reduced activity of the IFN-{gamma} promoter, we first studied binding of nuclear proteins to the radiolabeled proximal IFN-{gamma} promoter (-71 to -40 bp), using EMSAs with nuclear extracts of freshly isolated peripheral blood T cells. Nuclear extracts of T cells from most tuberculosis patients showed markedly reduced expression of proteins that bind to the proximal IFN-{gamma} promoter, compared with findings in nuclear extracts of T cells from healthy tuberculin reactors. These DNA-binding complexes contained CREB proteins, based on competitive EMSAs, supershift assays, and Western blotting with an anti-CREB Ab. Transient transfection of PBLs with a luciferase reporter construct under the control of the IFN-{gamma} promoter revealed reduced IFN-{gamma} promoter activity in tuberculosis patients. Transient transfection of Jurkat cells with a dominant-negative CREB repressor plasmid reduced IFN-{gamma} promoter activity. These data suggest that reduced expression of CREB nuclear proteins in tuberculosis patients results in decreased IFN-{gamma} promoter activity and reduced IFN-{gamma} production.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
There are at least two compelling reasons to study the human immune response to Mycobacterium tuberculosis. First, tuberculosis is a leading cause of death from infectious agents worldwide, claiming 1.9 million lives in 1997 (1). Despite the availability of effective antituberculosis therapy, tuberculosis control efforts in developing countries are hampered by the high cost of antituberculosis drugs, difficulty in ensuring completion of prolonged therapy, and increasing rates of drug resistance. Vaccination against tuberculosis would contribute greatly to tuberculosis control, but development of a vaccine hinges on an improved understanding of the immune response to M. tuberculosis.

The second reason to study tuberculosis is that it provides an excellent model to investigate the relationship between the immune response and clinical manifestations of disease from intracellular pathogens. Most persons infected with M. tuberculosis are healthy tuberculin reactors who mount a protective immune response. In contrast, patients with active tuberculosis have severe disease due to ineffective immunity, and when PBMC from tuberculosis patients are cultured with M. tuberculosis, production of IFN-{gamma} by T cells is depressed, compared with healthy tuberculin reactors (2, 3). Elucidation of the mechanism for reduced IFN-{gamma} production will enhance our understanding of resistance and susceptibility to disease from intracellular pathogens, as IFN-{gamma} production is central to immunity against many of these organisms (3, 4, 5, 6, 7).

Reduced IFN-{gamma} production in human tuberculosis is associated with reduced expression of IFN-{gamma} mRNA (3, 8, 9). Transcription of the IFN-{gamma} gene in activated T cells is controlled by essential regulatory regions in the distal (-96 to -80 bp) and proximal (-73 to -48 bp) portions of the IFN-{gamma} promoter (10). Binding of specific proteins to these regulatory regions markedly affects IFN-{gamma} promoter activity (10, 11, 12, 13, 14), and the proximal promoter element mediates the selective expression of IFN-{gamma} by T cells (12). To test the hypothesis that reduced IFN-{gamma} mRNA expression in human tuberculosis was due to alterations in these DNA-binding proteins, we evaluated binding to the proximal IFN-{gamma} promoter in tuberculosis patients and in healthy tuberculin reactors.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Patient population

Blood was obtained from 21 healthy tuberculin reactors and from 25 HIV-seronegative patients with culture-proven pulmonary tuberculosis, all of whom had received <4 wk of antituberculosis therapy. Acid-fast stains of sputum were positive in all patients. This work was reviewed and approved by the Institutional Review Boards of the University of Texas Health Center (Tyler, TX), and the University of North Texas Health Science Center (Fort Worth, TX), and informed consent was obtained from all participants.

Preparation of T cells

PBMC were isolated by differential centrifugation over Ficoll-Paque (Pharmacia Fine Chemicals, Piscataway, NJ). Freshly isolated PBMC were incubated with magnetic beads conjugated to anti-CD3 (Miltenyi Biotec, Auburn, CA), and a magnetic cell separator was used to positively select CD3+ cells. The purity of CD3+ cells was 98%, as measured by cytofluorometric analysis with an EPICS C flow cytometer (Beckman Coulter, Miami, FL).

Extraction of nuclear proteins

Nuclear proteins were prepared as previously described (11). The cellular pellets of CD3+ cells were suspended in cell lysis buffer containing 50 mM KCl, 0.5% Nonidet P-40, 25 mM HEPES buffer (pH 7.8), 1 mM PMSF, 2 µg/ml leupeptin, 2 µg/ml aprotinin, and 100 µM DTT (all from Sigma Aldrich, St. Louis, MO), and subsequently incubated for 5 min on ice. After centrifugation at 550 x g, the pellets (nuclei) and supernatants (cytosol) were collected. The nuclei were washed in cell lysis buffer without Nonidet P-40, repelleted at 550 x g for 5 min, and resuspended for 5 min on ice in extraction buffer containing 500 mM KCl, 25 mM HEPES (pH 7.8), 10% glycerol, 1 mM PMSF, 2 µg/ml leupeptin, 2 µg/ml aprotinin, 10 µg/m chymostatin (Sigma Aldrich), 10 µg/ml trypsin-chymotrypsin (Sigma Aldrich), and 100 µM DTT. The samples were subsequently frozen and thawed twice, using dry ice and a 37°C water bath, incubated with gentle agitation at 4°C for 25 min, and centrifuged at 18,000 x g for 10 min. The clear supernatants were collected as nuclear protein extracts, and the amount of nuclear proteins obtained were quantified (bicinchoninic acid, Pierce, Rockford, IL), aliquoted, and stored at -70°C.

EMSA

The nuclear protein extracts (5 µg) were incubated with 1 µg of poly(dI-dC) (Amersham Pharmacia Biotech, Piscataway, NJ), 20 mM Tris (pH 7.5), 60 mM KCl, 2 mM EDTA, 0.5 mM DTT, 4% Ficoll, and 8,000 cpm of 32P-labeled oligonucleotide DNA probes in a total volume of 10 µl. The binding reaction was conducted at room temperature for 30 min. In some experiments, 100-fold molar excess of nonlabeled double-stranded oligonucleotides were added as cold competitors, or different Abs were added, and the mixture was incubated on ice for 25 min before adding the labeled DNA probe. Nuclear protein complexes were resolved by electrophoresis on 5% nondenaturing polyacrylamide gels in 0.5 x Tris borate-EDTA buffer at 12 V/cm for 2 h at room temperature. Dried gels were exposed to hyperfilm (Amersham Pharmacia Biotech) at -70°C with intensifying screens.

The double-stranded probes were end-labeled with T4 polynuclear kinase (New England Biolabs, Beverly, MA) and [{gamma}-32P]dATP (DuPont NEN Life Science Products, Boston, MA), and ~1 ng of labeled DNA was used in a standard EMSA reaction. The following double-stranded oligonucleotides were used as labeled probes or cold competitors: IFN-{gamma} -71 to -40, 5'-AAAACTTGTGAAAATACGTAATCCTCAGGAGA-3' (12); CREB consensus binding site (wild type), 5'-AGAGATTGCCTGACGTCAGAGAGCTAG-3'; CREB consensus binding site (mutated), 5'-AGAGATTGCCTGTGGTCAGAGAGCTAG-3' (11); NF-{kappa}B, 5'-AGT TGA GGG GAC TTT CCC AGG C-3'. The underlined nucleotides on the wild-type probe are essential for binding to CREB.

For supershift assays, we used anti-CREB1 mAb (Santa Cruz Biotechnology, Santa Cruz, CA), which detects both phosphorylated and nonphosphorylated CREB, anti-junB (Santa Cruz Biotechnology), and mouse IgG (BD PharMingen, San Diego, CA).

Western blotting

Reducing SDS-PAGE (10%) was performed as previously described (15), using 10 µg of nuclear extract in each sample. The gel was then electroblotted in Tris glycine buffer containing 40% methanol onto a nitrocellulose membrane (Trans-blot; Bio-Rad, Hercules, CA). After blocking the membrane with blocking buffer (5% fat-free milk in TBS: 10 mM Tris (pH 8.0), 150 mM NaCl) for 2 h at room temperature, primary Ab was added at 1/2000 dilution (100 ng/ml) in 5% BSA in TBS with 0.05% Tween overnight at 4°C. The membrane was washed three times with TBS/Tween, and incubated with secondary Ab (rabbit anti-mouse IgG conjugated to HRP; Santa Cruz Biotechnology) at 1/8,000 dilution in blocking buffer for 1 h at room temperature. After washing five times in TBS/Tween and once in TBS, the membrane was drained briefly and Ab binding was detected by ECL (Amersham Pharmacia Biotech).

Real-time PCR for quantification of CREB mRNA

Total RNA was extracted from 2.5–5 x 106 PBMC with TRIzol reagent (Life Technologies, Gaithersburg, MD), according to the manufacturer’s instructions, and treated with RQ RNase-free DNase (Promega, Madison, WI) and Rnasin Ribonuclease inhibitor (Promega). The DNase-treated RNA was extracted with phenol/chloroform, and precipitated with sodium acetate and ethanol, using standard methods. Total RNA was reverse transcribed using the OligodT15 primer (Promega) and Omniscript reverse transcriptase (Qiagen, Valencia, CA).

Primers and probes for the CREB1 gene were designed with Primer Express software (PE Biosystems, Foster City, CA) and synthesized by Operon Technologies (Alameda, CA). The forward and reverse primers were 5'-GGTTTGTGCTGAGCTCCTTGA and 5'-TGCGGCCCACACATTACTT, respectively. The probe was 5'-CTTAGGGACAGAATTACCCCAGCCTCTTGA, 5'-fluoroscein phosphoramidite-labeled and 3'-TAMRA labeled. The Taqman {beta}-actin control reagents (PE Biosystems) were used as the internal standard.

Real-time PCR assays were performed in a sealed 96-well microtiter plate (PE Biosystems) on a spectrofluorometric thermal cycler (Applied Biosystems 7700 Prism, PE Biosystems). An equal quantity of each cDNA sample was aliquoted into paired wells containing 1x Taqman Universal PCR master mix (PE Biosystems), 5 pmols of either the CREB1 or {beta}-actin primers, and 1 pmol of the corresponding probe in a total volume of 25 µl. Standard curves for the CREB1 and {beta}-actin genes were generated using serial 10-fold dilutions of 10 ng/ml human genomic DNA (PE Biosystems) and the appropriate primers and probes. Each sample and each standard curve dilution were run in triplicate. Amplification was performed as follows: 50°C for 2 min, 95°C for 10 min, and 40 cycles of 95°C for 15 s, and 60°C for 1 min. For each sample, the fluorescent signal was measured and plotted during each 60°C annealing and extension step. Using the cycle threshold (the number of PCR cycles required for the fluorescent dye to be detectable), and the constructed standard curve for each gene, the relative amount of CREB1 and {beta}-actin cDNA in each sample was determined. To normalize for the amount of RNA in each sample, data for each patient were expressed as the ratio of CREB cDNA to {beta}-actin cDNA, expressed in arbitrary units.

Plasmid constructs

The following plasmids were used: 1) a luciferase reporter construct under the control of the IFN-{gamma} proximal promoter, containing head-to-tail (5' to 3') dimers of the IFN-{gamma} proximal promoter, -71 to -44 bp from the transcription start site (16); 2) a {beta}-galactosidase reporter construct driven by the SV40 promoter (16); 3) KCREB, a pRc/RSV CREB dominant-negative repressor plasmid containing CREB cDNA with a mutation in the DNA-binding domain that blocks binding of wild-type CREB to target DNA (17); 4) a pRc/RSV empty vector control. The latter two vectors were kindly provided by Dr. R. Goodman (Vollum Institute for Advanced Biomedical Research, Oregon Health Sciences University, Portland, OR).

Transient transfection assays

Freshly isolated nonadherent PBMC (2 x 106 ml) were cultured for 20 h in RPMI 1640 (Life Technologies) with 10% FCS (HyClone Laboratories, Logan, UT) and 1 µg/ml of PHA-L (Sigma Aldrich), as previously described (18). Cells were then washed and resuspended in 250 µl of fresh medium at 2 x 107/ml, and electroporated at room temperature with 40 µg of plasmid DNA, using a Gene Pulser (Bio-Rad), with settings of 250 V and 975 µF. The cells were then resuspended in fresh medium, rested for 1 h at 37°C, and stimulated with 50 ng/ml of PMA and 400 nM of ionomycin (both from Sigma Aldrich) for 4 h. Cell lysates were prepared, and luciferase activity was measured in a luminometer (Zylux, Maryville, TN), and expressed as relative light units (RLU),3 using a luciferase assay kit (Promega). {beta}-Galactosidase activity was measured with a commercially available kit (Promega).

Confluent Jurkat cells were washed and resuspended at 2.5 x 107 cells/ml in 400 µl of buffer containing 300 mM KCl, 10 mM K3PO4, 10 mM CaCl2, 10 mM MgCl2, 25 mM HEPES, 5 mM EGTA and 2 mM ATP (Sigma Aldrich), 1 mM reduced glutathione (Sigma Aldrich), and 30 µg of plasmid DNA for 10 min on ice, then electroporated as described above for PBLs. The cells were then rested on ice for 10 min, diluted to 2 x 106 cells/ml with fresh RPMI 1640 and 10% FCS, and cultured for 5 h at 37°C. The cells were then stimulated with 20 ng/ml PMA and 400 nM ionomycin for 22 h. Luciferase activity and {beta}-galactosidase activity were measured as outlined above for PBLs.


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Complexes binding to the proximal IFN-{gamma} promoter region in T cells from tuberculosis patients and healthy tuberculin reactors

We and others have shown that M. tuberculosis-induced IFN-{gamma} production and mRNA expression are reduced in tuberculosis patients, compared with healthy tuberculin reactors (2, 3, 19, 20). Transcription of the IFN-{gamma} gene depends on binding of specific nuclear proteins to the IFN-{gamma} promoter (10, 11, 12, 13, 14). To determine whether reduced IFN-{gamma} mRNA expression in tuberculosis patients was associated with reduced binding of nuclear proteins to the IFN-{gamma} promoter, we performed EMSAs using the radiolabeled proximal IFN-{gamma} promoter as a probe on nuclear extracts from freshly isolated CD3+ cells obtained from PBMC of 21 healthy tuberculin reactors and 15 tuberculosis patients. Fig. 1Go shows representative results for five healthy tuberculin reactors and five patients. The binding pattern observed was similar for T cells from all 21 healthy tuberculin reactors. However, in T cells from 12 of 15 tuberculosis patients, a low-mobility complex binding to the IFN-{gamma} promoter (indicated by the arrow in Fig. 1Go) was absent (p < 0.001, Fisher’s exact test), suggesting that DNA-binding proteins to the IFN-{gamma} promoter were reduced in tuberculosis patients. EMSAs with T cells from healthy tuberculin-negative donors showed DNA binding that was indistinguishable from that observed for healthy tuberculin reactors (data not shown). M. tuberculosis-induced IFN-{gamma} production by PBMC from healthy tuberculin reactors was 3050 ± 242 pg/ml, compared with 854 ± 460 pg/ml for tuberculosis patients (p < 0.001, Student’s t test).



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FIGURE 1. Expression of the proximal IFN-{gamma} promoter binding element in T cells from tuberculosis patients and healthy tuberculin reactors. Nuclear extracts were prepared from freshly isolated CD3+ cells from PBMC of five healthy tuberculin reactors (PPD+s) and five tuberculosis (TB) patients. EMSA was performed with the proximal IFN-{gamma} promoter -71 to -40 as a labeled DNA probe. The arrow shows the position of the low-mobility complex that binds to the IFN-{gamma} promoter.

 
To confirm the specificity of the DNA-protein complexes observed in Fig. 1Go, nuclear extracts from T cells of healthy tuberculin reactors were incubated with excess unlabeled proximal IFN-{gamma} promoter probe, before performance of EMSA. Excess unlabeled probe completely abrogated binding of the low-mobility complex binding to the radiolabeled proximal IFN-{gamma} promoter (Fig. 2Go, lanes 1 and 2), demonstrating the specificity of binding.



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FIGURE 2. Effect of oligonucleotide competitors on binding to the proximal IFN-{gamma} promoter in T cells from a healthy tuberculin reactor. Nuclear extracts were obtained from freshly isolated CD3+ cells from PBMC of a healthy tuberculin reactor. EMSA was performed, using the proximal IFN-{gamma} promoter -71 to -40 as a labeled DNA probe. Before adding the labeled probe, nuclear extracts were incubated with 100-fold molar excess of the unlabeled proximal IFN-{gamma} promoter, the consensus NF-{kappa}B binding site, or wild-type (wt) or mutated (mt) CREB consensus binding site. The arrow indicates the position of the low-mobility complex that binds to the IFN-{gamma} promoter.

 
Identification of the IFN-{gamma} proximal promoter binding complex with decreased expression in tuberculosis patients

Because CREB proteins have been shown to bind to the proximal IFN-{gamma} promoter (11), competitive EMSAs were performed on nuclear extracts of CD3+ cells obtained from five healthy tuberculin reactors, using 100-fold molar excess of the unlabeled wild-type CREB consensus binding site, the mutated CREB consensus binding site and the NF-{kappa}B binding site. Fig. 2Go shows a representative result. Binding of the low-mobility complex to the IFN-{gamma} promoter was eliminated by excess of the unlabeled wild-type CREB consensus binding site, but not by the mutant CREB or the NF-{kappa}B binding site, suggesting that the protein complex binding to the IFN-{gamma} promoter contained CREB protein. As an alternative means to confirm this finding, nuclear extracts from five healthy tuberculin reactors were incubated with anti-CREB1 mAb, before addition of the labeled proximal IFN-{gamma} promoter probe and performance of EMSA. Fig. 3Go shows a representative result. Anti-CREB1 mAb bound to the nuclear protein complex, resulting in a supershifted complex of higher m.w. In contrast, control IgG and anti-junB Abs had no effect. These results confirm that the IFN-{gamma} promoter binding complex in T cells from healthy tuberculin reactors contained CREB proteins.



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FIGURE 3. Effect of Abs on binding to the proximal IFN-{gamma} promoter in T cells from a healthy tuberculin reactor. Nuclear extracts were obtained from freshly isolated CD3+ cells from PBMC of a healthy tuberculin reactor. EMSA was performed, using the proximal IFN-{gamma} promoter -71 to -40 as a labeled DNA probe. Before adding the labeled probe, nuclear extracts were incubated with control IgG, anti-CREB1 mAb, or anti-junB Abs. The arrow indicates the position of the low-mobility complex that binds to the IFN-{gamma} promoter.

 
Expression of CREB protein and mRNA

The EMSA data above suggest that the capacity of CREB protein to bind the IFN-{gamma} promoter was reduced in T cells from tuberculosis patients, compared with healthy tuberculin reactors. To determine whether this reduction in DNA binding was due to reduced levels of CREB protein, we performed Western blotting with the anti-CREB mAb on nuclear extracts of CD3+ cells from freshly isolated PBMC of eight tuberculosis patients and nine healthy tuberculin reactors. Representative results for three tuberculosis patients and three healthy tuberculin reactors are shown in Fig. 4Go, demonstrating that CREB protein expression was markedly decreased in tuberculosis patients. This reduction in CREB protein was not due to a mutation that changed a single epitope of CREB, as Western blotting with a polyclonal Ab also showed reduced CREB protein in nuclear extracts of CD3+ cells from tuberculosis patients (data not shown).



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FIGURE 4. Western blot of nuclear extracts from tuberculosis patients and healthy tuberculin reactors with anti-CREB-1 mAb. Nuclear extracts from three tuberculosis (TB) patients and three healthy tuberculin reactors (PPD+s) were analyzed by SDS-PAGE under reducing conditions. The gel was blotted and probed with the anti-CREB-1 mAb.

 
To determine whether reduced CREB protein in T cells of tuberculosis patients was due to reduced mRNA levels, we used real-time PCR to quantify mRNA expression of CREB and {beta}-actin in CD3+ cells from PBMC of seven tuberculosis patients and six healthy tuberculin reactors. The ratio of CREB cDNA to {beta}-actin cDNA, expressed in arbitrary units, was similar in tuberculosis patients and healthy tuberculin reactors (11.6 ± 4.0 vs 10.8 ± 2.1 arbitrary units, p = 0.86, Fig. 5Go). Therefore, the reduced expression of CREB protein in tuberculosis patients was not due to reduced CREB mRNA expression. Pulse-chase experiments with [35S]methionine and cysteine, in combination with immunoprecipitation with anti-CREB mAb, revealed that the rate of degradation of CREB protein was not enhanced in tuberculosis patients (data not shown).



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FIGURE 5. Quantification of CREB mRNA expression in CD3+ cells from PBMC, using real-time PCR. Real-time PCR was used to quantify mRNA expression of CREB and {beta}-actin in CD3+ cells from PBMC of seven tuberculosis patients and six healthy tuberculin reactors (PPD+). The ratio of CREB cDNA to {beta}-actin cDNA, expressed in arbitrary units, is shown for each subject.

 
Binding to the consensus NF-{kappa}B site

To determine whether the decrease in CREB protein production in tuberculosis patients was specific or was due to a generalized decrease in transcription factors, we performed EMSAs, using the radiolabeled consensus NF-{kappa}B binding site as a probe, on nuclear extracts from freshly isolated CD3+ cells obtained from PBMC of four healthy tuberculin reactors and four tuberculosis patients. The amount of NF-{kappa}B binding complex was increased in T cells from tuberculosis patients (Fig. 6GoA), paralleling the enhanced NF-{kappa}B expression reported in monocytes from tuberculosis patients (21). These findings indicate that T cells from tuberculosis patients did not have a generalized reduction in transcription factors. Fig. 6GoB shows that the dominant low-mobility complex was specific for binding to the consensus NF-{kappa}B site, as it was eliminated by excess of the unlabeled NF-{kappa}B site, but not by the proximal IFN-{gamma} promoter or by the wild-type CREB consensus binding site.



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FIGURE 6. A, Expression of the NF-{kappa}B binding complex in T cells isolated from tuberculosis patients and healthy tuberculin reactors. Nuclear extracts were prepared from freshly isolated CD3+ cells from four healthy tuberculin reactors (PPD+s) and four tuberculosis (TB) patients. EMSA was performed with the consensus NF-{kappa}B binding site as a labeled DNA probe. B, Effect of oligonucleotide competitors on binding to the NF-{kappa}B consensus binding site in T cells from a healthy tuberculin reactor. Nuclear extracts were obtained from freshly isolated CD3+ cells from PBMC of a healthy tuberculin reactor. EMSA was performed, using the NF-{kappa}B binding site as a labeled DNA probe. Before adding the labeled probe, nuclear extracts were incubated with 100-fold molar excess of the unlabeled consensus NF-{kappa}B binding site, the proximal IFN-{gamma} promoter, or wild-type CREB consensus binding site

 
IFN-{gamma} promoter activity

To determine whether reduced CREB protein production in tuberculosis patients was associated with diminished IFN-{gamma} promoter activity, we transiently transfected PBLs with an IFN-{gamma} proximal promoter luciferase reporter plasmid and a {beta}-galactosidase reporter plasmid. For each sample, luciferase activity was normalized for {beta}-galactosidase activity, which controlled for differential transfection efficiency between samples. Cells from five tuberculosis patients stimulated with PMA and ionomycin showed significantly reduced luciferase activity, compared with cells from five healthy tuberculin reactors (16,893 ± 3,658 vs 53,148 ± 10,097 RLU, respectively, p = 0.01, Fig. 7Go). This indicates that functional IFN-{gamma} promoter activity is reduced in tuberculosis patients.



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FIGURE 7. IFN-{gamma} promoter activity in PBLs from tuberculosis patients and healthy tuberculin reactors. Nonadherent PBMC from five tuberculosis (TB) patients and five healthy tuberculin reactors (PPD+s) were transiently transfected with a luciferase reporter construct under the control of the IFN-{gamma} promoter and with a {beta}-galactosidase reporter plasmid. Luciferase activity was measured as RLU in medium alone or after stimulation with PMA and ionomycin, normalized according to {beta}-galactosidase activity to control for differences in transfection efficiency. The mean values and SE are shown.

 
To determine whether the reduced CREB expression in tuberculosis patients contributed to diminished IFN-{gamma} promoter activity, we attempted to evaluate the effects of the dominant-negative repressor KCREB plasmid on IFN-{gamma} promoter activity in T cells from healthy tuberculin reactors. However, because these experiments involve cotransfection of three constructs and transfection efficiency in PBLs is low, inconsistent results were obtained that were not interpretable. Therefore, we transfected the Jurkat T cell line with the IFN-{gamma} proximal promoter luciferase reporter plasmid, the {beta}-galactosidase reporter plasmid, and either the pRc/RSV KCREB plasmid or the pRc/RSV empty plasmid. The cells were then stimulated with PMA and ionomycin, and {beta}-galactosidase and luciferase activity were measured. After normalization for {beta}-galactosidase activity, cotransfection of the KCREB plasmid reduced luciferase expression by 70%, compared with cotransfection with the empty plasmid (12,208 ± 2,523 vs 38,690 ± 6,085 RLU, respectively, p = 0.04, Fig. 8Go). This demonstrates that neutralization of CREB inhibits IFN-{gamma} promoter function.



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FIGURE 8. Effect of down-regulation of CREB on IFN-{gamma} promoter activity in Jurkat cells. Jurkat cells were transiently transfected with: 1) a luciferase reporter construct under the control of the IFN-{gamma} promoter; 2) a {beta}-galactosidase reporter plasmid; 3) either a pRc/RSV KCREB plasmid or a pRc/RSV empty vector. Luciferase activity was measured as RLU in medium alone or after stimulation with PMA and ionomycin, normalized according to {beta}-galactosidase activity to control for differences in transfection efficiency. The mean values and SE for three experiments are shown.

 

    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
The current report is the first demonstration of an abnormality in binding of CREB transcription factors to the IFN-{gamma} promoter in patients with disease due to an intracellular pathogen. T cells from 80% of tuberculosis patients showed significantly reduced binding of low-mobility nuclear proteins to the proximal IFN-{gamma} promoter, compared with findings in T cells from healthy tuberculin reactors. These nuclear proteins specifically bound to the IFN-{gamma} promoter region and contained CREB, based on competitive EMSAs with wild-type and mutant CREB, and supershift assays with an anti-CREB Ab. Decreased levels of CREB in T cells from tuberculosis patients were demonstrated by Western blot, and were associated with reduced IFN-{gamma} promoter activity. Inhibition of CREB binding to DNA by a dominant-negative KCREB plasmid reduced IFN-{gamma} promoter activity in Jurkat cells, demonstrating that CREB is needed for optimal IFN-{gamma} promoter activity. The sum of these findings, in combination with prior studies showing reduced expression of IFN-{gamma} mRNA and protein by T cells from tuberculosis patients (3, 9, 20), strongly suggest that severe disease due to M. tuberculosis reduces CREB expression, which in turn contributes to decreased IFN-{gamma} promoter activity and IFN-{gamma} production.

IFN-{gamma} plays a pivotal role in resistance to intracellular pathogens, including viruses, bacteria, fungi, and parasites (4, 5, 6, 7, 22). Animals lacking IFN-{gamma} because of a gene deletion and patients with defective IFN-{gamma} receptors are highly susceptible to mycobacterial disease, including tuberculosis (23, 24, 25, 26). A growing body of evidence suggests that pathogenic mycobacteria have developed strategies to minimize the antimicrobial effects of IFN-{gamma} by interfering with IFN-{gamma}-mediated signal transduction in macrophages (27, 28). Our current findings suggest that M. tuberculosis may also combat the effects of IFN-{gamma} by reducing IFN-{gamma} promoter activity and mRNA expression through down-regulating CREB transcription factors. Further studies are needed to determine whether these findings can be generalized to patients with other infectious diseases.

CREB proteins are essential for T cell function and cytokine production. Transgenic mice expressing a dominant-negative form of CREB show defective T cell proliferation, and reduced production of IFN-{gamma}, IL-2, and IL-10 (14, 29). CREB also contributes to activation of the IL-2 promoter in T cells stimulated with CD28 and mitogen (30). IFN-{gamma} production is controlled at the transcriptional level, and the distal and proximal elements in the IFN-{gamma} promoter are essential for activation-specific production of IFN-{gamma} by T cells (10). CREB proteins bind to the IFN-{gamma} proximal element, but the resultant effects on transcription of the IFN-{gamma} gene remain controversial. Some investigators found that CREB proteins inhibited IFN-{gamma} transcription (12, 13), whereas others reported that they enhanced IFN-{gamma} transcription (11). Because these studies were performed in Jurkat T cells and in transgenic mice, their applicability to IFN-{gamma} production in humans in vivo is uncertain. We found that healthy tuberculin reactors with protective immunity against tuberculosis and high M. tuberculosis-induced IFN-{gamma} production had normal levels of CREB protein that bound to the proximal element of the IFN-{gamma} promoter. In contrast, tuberculosis patients had diminished CREB protein levels, reduced binding to the IFN-{gamma} promoter, diminished IFN-{gamma} promoter activity, and low IFN-{gamma} production. Binding to the IFN-{gamma} proximal promoter was also reduced in nuclear extracts of T cells from patients with lepromatous leprosy and extensive disease due to Mycobacterium leprae, compared with those from patients with limited disease and tuberculoid leprosy, although the nature of the binding complex was not characterized (31). Our current findings suggest that CREB protein expression in human T cells in vivo correlates closely with the capacity to produce IFN-{gamma} in response to M. tuberculosis.

The mechanism that results in reduced CREB proteins in tuberculosis patients remains uncertain. CREB mRNA expression was not reduced in tuberculosis patients, and the t1/2 of CREB protein was not reduced, as assessed by pulse-chase experiments. Other potential mechanisms include failure of CREB proteins to translocate from the cytoplasm to the nucleus, and defects in translation or posttranslational modifications of CREB protein. It is also possible that the t1/2 of CREB proteins in tuberculosis patients in vivo is reduced, due to characteristics of the cellular milieu that are not mimicked during the pulse-chase experiments performed in vitro. Further studies are needed to clarify this important question.

Transcription factors play a central role in orchestrating the immune response by controlling cytokine production. A wide variety of microbial pathogens, including M. tuberculosis, enhance production of inflammatory cytokines, such as TNF-{alpha}, IL-6, and IL-8, through up-regulation of transcription factors, particularly NF-{kappa}B (21, 32, 33, 34, 35). Inhibition of cytokine production by microorganisms through down-regulation of transcription factors has rarely been described. HIV infection was reported to inhibit STAT5 expression (36), but this finding was not confirmed (37). Our current report is consistent with the hypothesis that severe disease due to M. tuberculosis reduces expression of CREB protein, which in turn decreases IFN-{gamma} promoter activity and IFN-{gamma} production, weakening host defenses and favoring development of extensive disease. Alternatively, individuals with reduced expression of CREB protein and IFN-{gamma} may have enhanced susceptibility to progression of tuberculosis infection to disease, whereas persons with normal CREB protein and IFN-{gamma} levels may contain the infection and not develop tuberculosis disease. Distinguishing these possibilities would require evaluation of patients before development of tuberculosis, but this is not generally feasible. However, studies of CREB protein and IFN-{gamma} expression in animals infected with M. tuberculosis may provide insight into the contribution of CREB proteins to IFN-{gamma} production in vivo. It is intriguing to speculate that modulation of CREB protein expression may contribute to IFN-{gamma} production and to host defenses against intracellular pathogens other than M. tuberculosis. An improved understanding of the role of CREB proteins may permit development of novel strategies to treat and prevent infectious diseases.


    Acknowledgments
 
We thank Dr. Richard Goodman for generously providing us with the KCREB plasmid.


    Footnotes
 
1 This study was supported by the National Institutes of Health (AI27285 and K08HL04298), the Center for Pulmonary and Infectious Disease Control, and the Cain Foundation for Infectious Disease Research. P.F.B. holds the Margaret E. Byers Cain Chair for Tuberculosis Research. Back

2 Address correspondence and reprint requests to Dr. Peter F. Barnes, Center for Pulmonary and Infectious Disease Control, University of Texas Health Center, 11937 US Highway 271, Tyler, TX 75708-3154. E-mail address: peter.barnes{at}uthct.edu Back

3 Abbreviation used in this paper: RLU, relative light units. Back

Received for publication September 20, 2001. Accepted for publication February 6, 2002.


    References
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 

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