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The Journal of Immunology, 2001, 167: 4196-4206.
Copyright © 2001 by The American Association of Immunologists

Purification of Ag-Specific T Lymphocytes After Direct Peripheral Blood Mononuclear Cell Stimulation Followed by CD25 Selection. I. Application to CD4+ or CD8+ Cytomegalovirus Phosphoprotein pp65 Epitope Determination1

Géraldine Gallot*, Régine Vivien*, Catherine Ibisch*, Jaqueline Lulé{dagger}, Christian Davrinche{dagger}, Joëlle Gaschet* and Henri Vié2,*

* Institut National de la Santé et de la Recherche Médicale Unité 463, Nantes, France; and {dagger} Institut National de la Santé et de la Recherche Médicale Unité 395, Toulouse, France


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
The two main constraints that currently limit a broader usage of T cell therapy against viruses are the delay required to obtain specific T cells and the safety of the selection procedure. In the present work we developed a generally applicable strategy that eliminates the need for APC for timing reasons, and the need for infectious viral strains for safety concerns. As a model, we used the selection of T lymphocytes specific for the immunodominant CMV phosphoprotein pp65. PBMC from healthy seropositive donors were first depleted of IL-2R {alpha}-chain CD25+ cells and were then stimulated for 24–96 h with previously defined peptide Ags or with autologous PBMC infected with a canarypox viral vector encoding the total pp65 protein (ALVAC-pp65). Subsequent immunomagnetic purification of newly CD25-expressing cells allowed efficient recovery of T lymphocytes specific for the initial stimuli, i.e., for the already known immunodominant epitope corresponding to the peptides used as a model or for newly defined epitopes corresponding to peptides encoded by the transfected pp65 protein. Importantly, we demonstrated that direct PBMC stimulation allowed recovery not only of CD8+ memory T lymphocytes, but also of the CD4+ memory T cells, which are known to be crucial to ensure persistence of adoptively transferred immune memory. Finally, our analysis of pp65-specific T cells led to the identification of several new helper and cytotoxic epitopes. This work thus demonstrates the feasibility of isolating memory T lymphocytes specific for a clinically relevant protein without the need to prepare APC, to use infectious viral strains, or to identify immunodominant epitopes.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
The improvement of selection methods for the recovery of Ag-specific human T lymphocytes has general implications for immunologists. First, it can help to define the Ags expressed by pathogens and tumors that are recognized by T cells, and second, it can facilitate the preparation of specific T cell lines for adoptive immunotherapy. Indeed, adoptive cell therapy with specific cytotoxic T lymphocytes now appears to be a promising approach, particularly in the case of EBV or CMV infections affecting immunocompromised patients such as recipients of allogeneic organ or bone marrow transplants (1, 2, 3, 4).

From an immunological point of view, accumulating data in the literature tend to favor the notion that the immune response against these two viruses is essentially focused against a few proteins (5, 6, 7, 8). For example, frequent responses against the nonameric peptide GLCTLVAML (referred to as G9L) from the EBV early lytic protein BMLF1 (9) and frequent responses against the nonameric peptide NLVPMVATV (referred to as N9V) from the pp65 CMV phosphoprotein were observed among peripheral blood mononuclear cells of seropositive HLA-A*0201+ individuals (6). From a clinical point of view, two major constraints limit a broader use of T cell therapy against viruses: the delay required to obtain specific T cells and the safety of the selection procedure. In terms of delay, the selection of EBV-specific T cells requires the generation of an autologous B lymphoblastoid cell line (BLCL)3 for use as an EBV APC, followed by a coculture with autologous PBMC. Several weeks are required to obtain the BLCL and several additional weeks are required to enrich for EBV-specific T cells (10). In terms of safety, BLCL are obtained after infection of autologous PBMC with an EBV viral strain produced by the marmoset B95.8 cell line, which is cultured in the presence of FCS. Thus, this procedure uses biological material from two different xenogenic origins: simian for the cell line and bovine for the serum. A comparable level of complexity is associated with the preparation of CMV-specific T lymphocytes (3). Clearly, significant progress would be achieved by eliminating the need for APC preparations, for timing reasons, as well as the need for an infectious viral strain, for safety concerns.

In this report we describe a method that we considered initially for the following reasons: cross-linking of the Ag-specific receptor on the surface of T lymphocytes is the key signal for CD25 expression (11, 12, 13), and CD25 expression can occur even in the absence of APC (14). Consequently, we reasoned that if autologous presentation (B-T, monocyte-T, or T-T) of a particular epitope among fresh PBMC can induce CD25 expression, then even rare specific T cells could be sorted out from the total population according to this marker and can be induced to proliferate using optimal culture conditions even though their activation status may not be initially optimal. Using purification of various EBV or CMV Ag-specific T lymphocytes as a model system, we tested different methods of PBMC stimulation before CD25 selection. To test our concept, we used three types of antigenic stimuli. Initially, we tested single small peptides corresponding to known immunodominant epitopes. Subsequently, we used a pool of 10 large overlapping peptides (23 aa long with a step of 12), which included a known nonameric epitope. Finally, we also used autologous PBMC infected with a replicative defective canarypox (ALVAC) vector encoding the pp65 protein to stimulate the entire T cell repertoire specific for this protein on this particular genetic background. The data presented in this paper prove the feasibility of these approaches, which provide a valuable tool for the rapid sorting of Ag-specific T lymphocytes and the identification of new epitopes.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Donors

Blood packs were obtained from healthy HLA-A0201+ or HLA-B8+ EBV or EBV/CMV seropositive adult donors after informed consent was obtained. PBMC were separated using Ficoll density centrifugation (lymphocyte separation medium; Eurobio, Paris, France).

Peptides

The following peptides were obtained >70% pure by HPLC from Sigma-Genosys (Cambridge, UK): The HLA-A2 binding peptide AAGIGILTV (referred to as A9V) derived from the melanoma-associated MelanA/MART-1 protein (15), the HLA-A2 binding peptide NLVPMVATV (referred to as N9V) derived from the pp65 CMV phosphoprotein (6), the HLA-A2 binding peptide GLCTLVAML (refereed to as G9L) derived from the EBV early lytic protein BMLF1 (16), and the HLA-B8 binding peptide FLRGRAYGL (referred to as F9L) derived from the EBV latent protein EBNA3A (13). In addition a panel of 50 23-aa-long (23 mer) peptides (numbered 1–50) overlapping by 12 aa and spanning the entire CMV pp65 sequence was obtained from Chiron Mimotopes (Suresnes, France). Note that the immunodominant HLA-A2 nonamer N9V was included in the 23-aa-long peptide 45. Peptide stock solutions (20 mg/ml in DMSO) were diluted first to 2 mg/ml in acetic acid (1%) and second to the final concentration in RPMI 1640 culture medium (Sigma-Aldrich, St. Quentin Fallavier, France).

Antibodies

The rat anti-human IL-2R {alpha}-chain (CD25) Ab 33.B.3.1 was kindly provided by Dr. J. Carcagne (Pasteur-Mérieux, Lyon, France). Anti-CD3, -CD4, -CD8, -CD19, and anti-HLA DQ mAbs are from Immunotech (Marseille, France) and the anti-IFN-{gamma}-FITC is from BD PharMingen (San Diego, CA).

CD25+ depletion of fresh PBMC

The small fraction of "contaminating" CD25+ cells already present among unstimulated PBMC was depleted as follows: fresh PBMC (200 x 106/ml) were incubated for 20 min at 4°C in 2 ml of PBS containing 5% human serum (HS), 2 mM EDTA, and 20 µg/ml 33.B.3.1. Cells were then washed twice with 30 ml of ice-cold PBS/HS/EDTA (centrifugations were performed at 4°C at 300 x g) and the pellet was resuspended in PBS/HS/EDTA (80 µl for 10 x 106 cells). Goat anti-rat IgG MicroBeads (Miltenyi Biotec, Bergisch Gladbach, Germany) were added (20 µl for 10 x 106 cells), and the cell suspension was mixed gently and incubated for 15 min at 4°C. The cells were then washed in 25 ml of PBS/HS/EDTA and were resuspended in the same buffer (500 µl for 100 x 106 cells). Depletion of CD25+ cells was performed using the VarioMACS (Miltenyi Biotec) with an AS column according to the supplier’s instructions.

Stimulation of CD25-depleted PBMC with peptides

The CD25-depleted PBMC fractions were loaded for 2 h at 1 x 107/ml with 10 µM of G9L (Do1, Do2, and Do3), 1.25 µM of F9L (Do4), 10 µM of N9V (Do6, Do8, and Do12), or 5 µM of a peptide mixture (40–49; Do8 and Do12) in RPMI 1640 alone in a 15-ml polypropylene tube (Sarstedt, Newton, NC). Then, cells were washed twice and cultured in 80 cm2 tissue culture flasks (Nunc, Copenhagen, Denmark) at 2.5 x 106/ml in RPMI 1640, 8% HS, 1% L-glutamine, and 50 µg/ml gentamicin without cytokine for 24–96 h.

Stimulation of CD25-depleted PBMC with ALVAC (canarypox virus)

For pp65 stimulation, one-fourth of the CD25- PBMC fractions was infected at 1 x 107 cells/ml with recombinant ALVAC-pp65 expressing the pp65 protein for 60 min at 37°C in RPMI 1640 alone in a 15-ml polypropylene tube (Sarstedt) at a multiplicity of infection (MOI) of 5:1. After infection, cells were washed once and cocultured with uninfected CD25- PBMC in 80 cm2 tissue culture flasks (Nunc) at 2.5 x 106/ml in RPMI 1640, 8% HS, 1% L-glutamine, and 50 µg/ml gentamicin without cytokine for 24–96 h.

Selection of Ag-specific T cells

After 24–96 h of stimulation with peptides or recombinant ALVAC-pp65 infected autologous PBMC, cells were incubated with the 33.B.3.1 anti-CD25 mAb in the same conditions as for the CD25 depletion, i.e., 20 min at 4°C at a concentration of 2 x 108cells/ml in the presence of 20 µg/ml 33.B.3.1. After incubation, cells were washed twice and incubated with goat anti-rat MicroBeads (80 µl of cold PBS/HS/EDTA and 20 µl of goat anti-rat MicroBeads (Miltenyi Biotec) for 1 x 107 cells) for 15 min at 4°C. After washing, cells were resuspended (500 µl for 108 cells) in cold (4°C) PBS/HS/EDTA. The CD25+ selection was performed using the VarioMACS on a MS+/RS column (Miltenyi Biotec) according to the supplier’s instructions. The CD25+ fraction was then stimulated with pooled allogeneic feeder cells (5 x 106 irradiated (35 Gys) PBMC and 5 x 105 irradiated (35 Gy) BLCL) in the presence of 1 µg/ml leukoagglutinin-A (Sigma-Aldrich) and 150 U/ml rIL-2 (Proleukin, Adesleukine; Chiron, Amsterdam, Pays-Bas). Before specificity assays, cells lines were cultured in rIL-2 alone (150 U/ml) for at least 3–6 wk.

Generation of EBV-BLCL

BLCL were generated for each donor by culturing 2 x 106 PBMC in 100 µl of RPMI and 10% FCS with 500 µl of EBV-containing supernatant from the virus-producing B95.8 marmoset cell line. Cultures were performed in the presence of 1 µg/ml cyclosporin A. After 24 h, 2 ml of RPMI 1640 containing 10% FCS, 1% L-glutamine, and 50 µg/ml gentamicin was added to each well.

Target cells

Autologous or allogeneic BLCL and PHA blasts were either infected with a recombinant vaccinia virus or loaded with a peptide. Chromium labeling was performed before the loading and after the infection. For infection we used recombinant vaccinia viruses encoding for the CMV phosphoprotein pp65 (WR-pp65) or the CMV immediate-early protein IE1 (WR-IE1). The vectors, vCP260 (ALVAC-CMV-pp65); vP1214 (WR-pp65); vCP244 (ALVAC-IE1-Exon4); and vP893 (WR-IE1), were kindly provided by Dr. J. Tartaglia (Virogenetics Corporation, Troy, NY). Target cells (1 x 106) were infected in RPMI 1640 alone at a MOI of 10 for 60' at 37°C in polypropylene tubes (Sarstedt). After infection, cells were diluted to 8 x 105 cells/ml in RPMI 1640 and 10% FCS for overnight incubation. For loading, target cells were incubated for 30 min at 37°C in the presence of 10 µM of G9L, F9L, A9V, or N9V, or 10 µM of peptides 40–49, and were washed twice in RPMI-FCS. For human CMV (HCMV)-infected target cells, HCMV AD169 was propagated in MRC-5 human fibroblasts. Virus was collected when cytopathic effects were >90%. Supernatants were clarified by centrifugation at 1500 x g for 10 min at 4°C and were stored at -80°C until use. Virus titer was determined by PFU titration in human foreskin fibroblasts (American Type Culture Collection, Manassas, VA) according to standard procedures. U373 myasthenia gravis (MG) astrocytoma cells were a gift from S. Michelson (Institut Pasteur, Paris, France). Both MRC5 and U373 MG cells were phenotyped HLA-A2 by the Laboratoire Central d’Immunologie-Rangueil (Prof. Ohayon, Toulouse, France). Before cytotoxic assays, U373 MG and MRC-5 cells were incubated overnight with IFN-{gamma} (1000 U per 106 cells) and were infected with HCMV (MOI of 3) or mock infected for 4 h.

Cytotoxic assay

Infected or loaded target cells were labeled with 100 µCi Na251CrO4 (1 h for BLCL and PHA blasts and for the last 2 h of HCMV infection for U373 MG and MRC5) at 37°C, washed three times, and plated (3000–5000 cells/well) with effector cells at the indicated E:T ratio in a 96-well round-bottom culture plate. After 4 h of incubation at 37°C, 25 µl of supernatant from each well was removed, mixed with 100 µl of scintillation fluid (Optiphase "Supermix"; Wallac, Courtaboeuf, France), and counted in a {beta} scintillation counter (Wallac). Each test was performed in triplicate. Results are expressed as percentage of lysis, according to the following formula: (experimental release - spontaneous release)/(maximal release - spontaneous release) x 100, where experimental release represents mean counts per minute released from the target cells in the presence of effector cells; spontaneous release represents that from target incubated without effectors; and maximum release represents that from target incubated with 1% Triton X-100.

Proliferation assays

Resting T cell taken >3 wk after the last stimulation were cocultured in 96-microwell flat-bottom culture plates at a 1:1 responder:stimulator ratio (25,000 T/25,000 B) for 72 h with the irradiated (35 Gy) autologous or allogeneic target BLCL described above. Six hours before harvesting, 1 µCi of [3H]thymidine was added to each well, and [3H]thymidine uptake was then measured in a liquid {beta} scintillation counter (Wallac). Results are expressed as the mean of triplicate cultures.

Preparation of the CD25-depleted responder population (referred to as the CD25- fraction), peptide stimulation, and CD25+ cell recovery (referred to as the CD25+ fraction) (Fig. 1Go)

Because the frequency of T cells specific for a single MHC and peptide complex is expected to be low, the few PBMC already expressing CD25 had first to be eliminated. The recovery after CD25 depletion was in mean 83.5% ± 11.4%. In preliminary experiments we tested the effect of different peptide stimulation conditions on total CD25+ recovery. The CD25- fraction was either pelleted or adjusted to 107 cells/ml for 2 h before incubation with peptide (2.5 or 10 µM), incubation was performed either 18 or 72 h at 2.5 x 106/ml, and cells were then either incubated in RPMI 1640 supplemented with 5% HS or in X-vivo 15 serum-free culture medium. No dramatic differences were observed between these different conditions on total CD25+ recovery. As a negative control, CD25- fractions were processed without stimulation. Through six experiments performed with the peptide G9L, the CD25+ frequencies varied from 1/600 to 1/286 (1/540 in mean), whereas for the six negative controls, CD25+ recovery varied from 1/800 to 1/300 (1/466 in mean). That the number of CD25+ cells recovered after incubation with or without peptide were very similar was somewhat unexpected. Whether this was due to contamination of the initial CD25- fraction by CD25+ cells that escaped the depletion procedure, to nonspecific induction of the CD25 Ag during the incubation period at high cellular concentration, to delayed specific induction of the CD25 Ag among lymphocytes recently stimulated in vivo, or to nonspecific binding of 33.B.3.1 on some CD25-depleted cells before the positive selection is not known. Experiments are currently being performed to directly address this question.



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FIGURE 1. The three selection strategies evaluated. In a, CD25+ fractions were selected after stimulation with a single peptide of the CD25- fraction. In b, the CD25- fraction was stimulated with a mixture of 10 overlapping peptides (23 aa long with an overlap of 12 aa), whereas in c, stimulation was performed with autologous PBMC from the CD25- fraction infected with a canarypox virus (ALVAC-pp65) encoding the entire CMV-pp65 phosphoprotein (responder:stimulator ratio of 4:1).

 
Isolation of CD4+ or CD8+ T cells

Cells (5 x 106) were incubated with anti-CD4 or anti-CD8 mAb diluted at 1/40 (BioAtlantic, Nantes, France) for 30 min at 4°C, washed twice, and incubated at a 4:1 bead:cell ratio with Dynabeads M-450 sheep anti-mouse IgG (Dynal Biotech, Oslo, Norway) according to manufacturer’s instructions. The positive fraction was then stimulated with pooled allogeneic feeder cells in the presence of leukoagglutinin-A and rIL-2 as described above. Before specificity assays, the cell lines were cultured in rIL-2 alone (150 BRMP U/ml) for at least 3–6 wk.

Flow cytometry

Binding of anti-CD4 anti-CD8 mAb (Immunotech) was revealed by FITC-conjugated rat anti-mouse IgG antiserum (green fluorescence; rabbit anti-mouse-FITC; BioAtlantic). Five thousand labeled cells were analyzed on a FACScan flow cytometer (BD Biosciences, Mountain View, CA) using LYSIS II software. All mAbs were used at previously tested saturating concentrations. For determination of IFN-{gamma}-producing pp65-specific T lymphocytes, intracellular cytokine assessment using flow cytometry was performed as previously described (17), with minor modifications. Briefly, resting T cells (taken 20 days after the last stimulation) were cocultured with the indicated target cells at a concentration of 2.5 x 106/ml (E:T ratio of 1:1) in the presence of 10 µg/ml brefeldin A (Sigma-Aldrich) for 5 h at 37°C in a humidified 5% CO2 incubator. After incubation, cells were washed with cold PBS, resuspended in PBS containing 1 mM EDTA (Amresco, Solon, OH), incubated for 10 min at 37°C, washed with cold PBS, fixed in PBS containing 4% (w/v) paraformaldehyde (EMS, Ft. Washington, PA) for 10 min at room temperature. Finally, cells were washed in PBS and 1% BSA (w/v; Sigma-Aldrich). For staining, permeabilization was performed with PBS, 0.1% BSA, and 0.1% saponin (w/v; Sigma-Aldrich). After staining with Abs PE-CD3, PE-CD19, (Immunotech), or FITC-conjugated mouse anti-human IFN-{gamma} (BD PharMingen) for 30 min at 4°C, cells were washed twice in PBS containing 0.1% BSA and 0.1% saponin, once in PBS, and were then resuspended in PBS containing 1% paraformaldehyde, and stored in the dark at 4°C before analysis.


    Results
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 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Selection of Ag-specific T lymphocytes after stimulation of CD25-depleted PBMC with a single peptide (Fig. 2Go)

CD25-depleted PBMC from HLA-A*0201+ or HLA-B8+ donors were stimulated with the peptides G9L, F9L, or N9V (see Fig. 1Go and Materials and Methods). After amplification using a procedure that preserves the initial diversity of the population amplified (18), the CD25+ fractions were tested for cytotoxic activity against specific and irrelevant target cells. Results are shown in Fig. 2Go, ac, for G9L, F9L, and N9V stimulation, respectively. In Fig. 2Goa, the CD25+ fraction showed specific recognition of the HLA-A*0201/G9L antigenic complex only, because neither the HLA-A*0201+ target BLCL loaded with peptide A9V or N9V nor the HLA-A*0201- target BLCL loaded with the G9L peptide were recognized. Low background recognition of HLA-A*0201+ BLCL loaded with an irrelevant peptide was expected because only a small minority of BLCL cells express proteins of the lytic cycle from which the G9L peptide is derived. In Fig. 2Gob, the CD25+ fraction killed the HLA-B8+ but not the HLA-B8- target BLCL loaded with F9L, and did not kill the HLA-B8+ target BLCL loaded with A9V or G9L. Consequently, this T cell population contained CTL specific for the HLA-B8/F9L antigenic complex. Note that all BLCL used in this study were obtained by transformation with the EBV strain derived from the marmoset B95.8 cell line, which encodes an equivalent EBNA3A epitope (F9I instead of F9L) that is not recognized when endogenously presented (19). Thus, HLA-B8+ BLCL are not recognized unless they are loaded with the wild-type peptide. Finally, in Fig. 2Goc, the CD25+ fraction killed the HLA-A2+ but not the HLA-A2- target BLCL loaded with N9V, and did not kill the HLA-A2+ target BLCL loaded with A9V or G9L (Fig. 2Goc). Consequently, this population contained CTL specific for the HLA-A*0201/N9V antigenic complex.



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FIGURE 2. Selection of Ag-specific T lymphocytes after PBMC stimulation with a single peptide: T lymphocyte selection was performed as it is described in Fig. 1Goa. Shown are three examples of cytotoxic activity of CD25+ fractions after stimulation with three known EBV or CMV epitopes. CD25- fractions from HLA-A*0201+ (a and c) or HLA-B8+ (b) EBV (ac) or CMV (c) seropositive individuals were stimulated in the presence of G9L (a), F9L (b), or N9V (c) peptides. After immunomagnetic sorting, CD25+ fractions were amplified and tested for cytotoxic activity against the indicated HLA/peptides antigenic complexes at an E:T ratio of 50:1.

 
Selection of Ag-specific T lymphocytes after stimulation of PBMC with a mixture of peptides (Fig. 3Go)

The above data proved the efficiency of our procedure and validated the concept that PBMC stimulation with a single peptide followed by a CD25 selection step allows the recovery of T cells with known specificity. Next, we reasoned that if an epitope could still be recognized by memory T lymphocytes when presented among many others, then such a procedure could be used for the random search of new specificities. To test this hypothesis, selection of HLA-A*0201/N9V-specific T lymphocytes was used as a model. CD25- PBMC from two CMV seropositive individuals (donors 8 and 12) were stimulated under the conditions described above, but with a mixture of 10 23 mer (5 µM) peptides spanning one-fifth of the pp65 protein instead of the single N9V peptide (the 23 mer 45 encompasses the nonamer N9V). After amplification, the CD25+ fractions were tested against HLA-A2+ and HLA-A2- BLCL loaded individually with each of the 23 mer peptides present within the pool used for stimulation, or with N9V peptide (see Fig. 3Go). No significant response was observed against peptides loaded or unloaded HLA-A2- BLCL (Fig. 3Go). No response against any target was detected in the CD25+ fraction of PBMC cultured in the absence of the peptide pool (not shown). In contrast, the CD25+ fraction selected after stimulation with the mixture of 23 mer peptides showed two readily detectable cytotoxic responses: one against HLA-A2+ BLCL loaded with the 23 mer 45, which contain the N9V sequence, and the other against the nonamer N9V itself. Consequently, these data demonstrated that the nonameric epitope N9V, even when provided within one of 10 overlapping 23 mer, could still be recognized by HLA-A*0201/N9V-specific T lymphocytes. Thus, our procedure seems particularly attractive for the screening of a limited set of peptides covering a limited protein area.



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FIGURE 3. Selection of Ag-specific T lymphocytes after PBMC stimulation with a mixture of peptides: T lymphocyte selection was performed as described in Fig. 1Gob. CD25- fractions from two HLA-A*0201+ healthy CMV seropositive donors were stimulated with a mixture of 10 overlapping peptides spanning one-fifth of the pp65 protein NH2-terminal region. Note that peptide 45 encompasses the known immunodominant decamer N9V. After a 24- and 72-h incubation at 37° for donors 8 and 12, respectively, the CD25+ fractions were purified using immunomagnetic separation. After amplification, CD25+ fractions were tested against HLA-A2+ and HLA-A2- BLCL loaded with the indicated peptide (E:T ratio 50:1). Results are expressed as percentage of specific lysis.

 
Selection of Ag-specific T lymphocytes after stimulation of PBMC with a canarypox viral vector (ALVAC-pp65) encoding the entire pp65 sequence (Figs. 4Go and 5Go)

Finally, keeping in mind the objective to apply such a T cell selection strategy in a clinical setting, we tested a canarypox viral vector to induce expression of the entire pp65-protein among fresh CD25- PBMC. Naturally attenuated canarypox (ALVAC) constructs have been shown to be an efficient tool in the induction of protective immunity in vivo (20, 21, 22) and also in the ex vivo activation of cytotoxic T lymphocytes (23). These vectors, which retain the pancytotropism of most pox viruses, are unable to productively replicate in nonavian species, and thus eliminate the safety concerns that exist for vaccinia vectors. CD25- PBMC from donors 8, 12, 15, 20, 22, and 26 were stimulated with ALVAC-pp65 according to the protocol described Materials and Methods. For donors 8 and 12, this assay was performed in parallel with the other procedures described above, i.e., a stimulation with the pool of peptides (40–49) or the peptide N9V alone. After amplification, the CD25+ fractions were tested against an HLA-A2+ BLCL either loaded with a peptide (N9V or G9L), infected with a canarypox vector (ALVAC-pp65 or ALVAC-IE1), or infected with a recombinant vaccinia virus (WR-pp65 or WR-IE1). Results obtained with donor 8 are reported in Fig. 4Go as the percentage of specific lysis observed at an E:T ratio of 10:1. For the three cases, CD25-selected PBMC recognized the HLA-A2+ BLCL when loaded with the N9V but not with the G9L control peptide. They also recognized the same target BLCL when it was infected with the recombinant vaccinia virus WR-pp65 but not with the recombinant virus expressing the immediate early protein IE1 (similar results were obtained with donor 12). Determination of pp65 expression levels by intracellular staining after BLCL infection with ALVAC-pp65 or WR-pp65 indicated that canarypox vectors infect BLCL significantly less efficiently than vaccinia vectors (data not shown). Accordingly, although HLA-A2+ BLCL infected with the ALVAC-pp65 showed some recognition compared with ALVAC-IE1 infected BLCL, the level of cytotoxicity observed was well below that obtained against recombinant vaccinia virus-infected BLCL. Remarkably, the three CD25+ fractions had a comparable level of cytotoxic activity against the target cells either loaded with a single peptide or infected with a vector encoding the entire protein. Finally, the CD25+ fractions from ALVAC-pp65 stimulated PBMC of donors 8, 20, 22, and 26 were tested against the human HLA-A2 U373 MG or MRC-5 cell lines infected or not with HCMV AD169. Results presented in Fig. 5Go demonstrate that all CD25-selected fractions showed specific cytotoxic activity against these actual HCMV-infected target cells. Although a systematic analysis at the clonal level will be necessary to document the different specificities present among T cell population selected with the pool of peptide and the ALVAC vector, taken together, these results stress the dominance of the response directed at the HLA-A2 N9V CMV epitope. In total, specific T lymphocytes were isolated after stimulation with N9V, the peptide pool, or ALVAC-pp65 from 3 of 5, 2 of 3, and 6 of 11 of the donors tested, respectively.



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FIGURE 4. Selection of Ag-specific T lymphocytes after PBMC stimulation with a single peptide, a mixture of peptides, or a canarypox vector encoding an entire protein. In this experiment, the three selection procedures described in Fig. 1Go were applied on the same blood sample. After amplification, the CD25+ fractions were tested against HLA-A2- or HLA-A2+ BLCL either loaded with N9V or G9L or infected with ALVAC-pp65, ALVAC-IE1, or with the recombinant vaccinia viruses WR-pp65 or WR-IE1. Results are expressed as the percentage of specific lysis at an E:T ratio of 10:1. Only results obtained against the HLA-A2+ BLCL are shown, and all control values against the HLA-A2- BLCL were negatives.

 


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FIGURE 5. Specific lysis of HCMV-infected target cells by CD25-selected ALVAC-pp65-stimulated CD25- PBMC. After amplification, selected cell lines were tested 1 mo after the last stimulation for their capacity to kill actual HCMV-infected target cells. The human HLA-A2 astrocytoma cell line U373 MG and the human HLA-A2 fibroblast cell line MRC5 were incubated overnight with IFN-{gamma} (1000 U per 106 cells) and were infected or not for 4 h at a MOI of 3 before assay. Results are expressed as the percentage of specific lysis at an E:T ratio of 10:1.

 
Minimal estimation of specific T lymphocytes frequencies after CD25 selection of ALVAC-pp65-stimulated PBMC (Fig. 6Go)

Memory/effector CD4+ (Th1-type) and CD8+ T lymphocytes have the capability to secrete effector cytokines like IFN-{gamma} following short-term antigenic restimulation. To obtain a minimal estimation of the enrichment of pp65-specific T lymphocytes among the CD25+ fraction, fresh PBMC and resting ALVAC-pp65-stimulated PBMC (tested 20 days after the last stimulation) were tested for their capacity to secrete IFN-{gamma} following stimulation against the autologous BLCL alone or transfected with pp65 or IE1 (an example of such a determination for donor 8 is shown in Fig. 6Goa). Results obtained for the five donors tested are shown in Fig. 5Gob: minimal estimation of pp65-specific T lymphocytes ranged from 7.9 to 76% (Fig. 6Gob). Among pp65-unselected PBMC of the same donors, the frequencies of pp65-specific cells ranged from 0.2 to 2.2% (data not shown). To evaluate the speed of amplification of the populations of interest, the mean doubling time of 28 CD25+ fractions was evaluated and found to be 33.3 h. Fig. 6Goc shows the theoretical growth of a CD25+ fraction and the particular example of donor 8 ALVAC-pp65-selected cells. In this case, the pp65-specific T lymphocytes were amplified 583-fold within 13 days.



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FIGURE 6. Minimal estimation of specific T lymphocytes frequencies after CD25 selection of ALVAC-pp65-stimulated CD25- PBMC. PBMC and resting ALVAC-pp65-stimulated PBMC (tested 20 days after the last stimulation) were tested for their capacity to secrete IFN-{gamma} following stimulation against the autologous BLCL alone or transfected with pp65 or IE1 (an example of such determination for donor 8 is shown in a). Results obtained for the five donors tested are shown in b. Among pp65-unselected PBMC of the same donors, the frequencies of pp65-specific cells ranged from 0.2 to 2.2% (data not shown). Evaluation of the efficiency of the nonspecific amplification procedure was performed from 28 CD25+ fractions isolated during preliminary assays (Materials and Methods) and the course of the study. The mean doubling time of these 28 CD25+ fractions was found to be 33.3 h. c, The theoretical growth of a CD25+ fraction (± 1 SD) and the particular example of donor 8 ALVAC-pp65-selected cells. In that case, the pp65-specific T lymphocytes were amplified 583-fold within 13 days.

 
Selection of Ag-specific T lymphocytes after PBMC stimulation with a canarypox vector encoding pp65 allows recovery of both CD4+ and CD8+ memory-specific T lymphocytes (Fig. 7Go)

To determine whether CD25+ fractions selected after ALVAC-pp65 stimulation contained pp65-specific T lymphocytes other than the HLA-A*0201/N9V-specific CD8+ cells described above, they were further separated into CD4+ and CD8+ fractions. After immunomagnetic separation and amplification, each fraction was tested for purity according to their phenotype and for specificity using proliferation and cytotoxic assays. The results are shown in Fig. 7Go. The CD4+ fraction, whose purity is indicated in the top panel, was tested against the autologous BLCL either loaded with the N9V or an irrelevant peptide (G9L) or transfected with a vaccinia virus encoding pp65 (WR-pp65) or IE1 (WR-IE1). As shown, the CD4+ fraction contained T lymphocytes specific for the pp65-transfected autologous BLCL only. This result proved that canarypox virus-infected HLA class II PBMC-bearing cells, likely B lymphocytes or monocytes, were responsible for this CD4+ T lymphocyte activation. As expected, no reactivity was detected against the HLA class I-restricted epitope N9V. The CD8+ fraction was cytotoxic for the autologous BLCL transfected with the WR-pp65 vaccinia virus and also with the autologous BLCL loaded with the peptide N9V, but not against the autologous BLCL transfected with the WR-IE1 vaccinia virus or loaded with the G9L control peptide. These data demonstrated that pp65-specific T lymphocytes were present in both the CD4+ and CD8+ fraction and the data also confirm the immunodominance of the N9V epitope among pp65-specific CD8 T cells. From the 11 donors tested, specific T cells could be recovered after stimulation with ALVAC-pp65 in six cases and both CD4+- and CD8+-specific T cells were obtained in five of these six responding donors.



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FIGURE 7. Proliferative or cytotoxic activity of CD4+- or CD8+-purified CD25+ T lymphocytes after ALVAC-pp65 CD25- PBMC stimulation. After amplification, the CD25+ fractions were further separated into CD4+ and CD8+ fractions by immunomagnetic sorting. Purity of each fraction is shown on the top panel. CD4+ and CD8+ T lymphocytes were then tested in a proliferative and a cytotoxic assay, respectively. As shown, pp65-specific T lymphocytes were present in both CD4+ and CD8+ fractions. Note that the presence of T lymphocytes specific for N9V was detected among CD8+ cells only as it was expected for this HLA class I-restricted epitope.

 
Clonal analysis and epitope mapping (Fig. 8Go)

To precisely document the presence of CD4-specific T lymphocytes among pp65-selected PBMC, CD4 T cell clones were derived by limiting dilution from the bulk cultures of four different donors (8, 12, 15, 20). After cloning, each clone was tested against the autologous BLCL loaded with one of the 50 peptides covering the entire pp65 sequence. Fig. 8Go shows an example of peptide identification. Twenty-seven of the 28 CD4+ T cell clones tested showed the pattern of reactivity presented, strongly suggesting that this particular CD4+ population contained only one or a few specific distinct T cell clones. Proliferation was observed against the autologous BLCL only when it was loaded with peptide 4 and not with any other peptide from the panel (Fig. 8Goa). Further testing with five overlapping shorter peptides covering the sequence of peptide 4 allowed identification of the minimal peptide L12Q, whose reactivity is shown in Fig. 8Gob. Finally, this recognition was abrogated in the presence of an HLA-DQ-specific mAb (not shown) and was observed against HLA-DQ0602+ target BLCL only (Fig. 8Goc), thus demonstrating that HLA-DQ0602 was the restricting element. Using this approach, CD4+ T cell clones specific for peptides 4, 14, 34, and 45 were identified from donors 8, 12, 15, and 20, and CD8+ T cell clones specific for peptides 25, 30, and 33 were identified from donors 8 and 20. Table IGo summarizes the panel of pp65 epitopes identified during this study. In the case of donors 8, 12, and 15, the testing of shorter peptides derived from the 23 mer initially used for screening allowed identification of the minimal epitopes underlined in Table IGo.



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FIGURE 8. Determination of clone Do12-CD4-1 specificity. a, Clone Do12-CD4-1 was tested for its ability to proliferate in the presence of the autologous BLCL loaded with each one of the 50 (23-aa-long) peptides covering the entire pp65 sequence. Peptide 4 was the only one able to induce Do12-CD4-1 proliferation. Testing the reactivity of shorter peptides allowed identification of the 12 mer LLQTGIHVRSQ (b). This recognition was blocked by a mAb directed against HLA-DQ (not shown) and occurred only against HLA-DQO602+ BLCL (c).

 

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Table I. CMV-pp65 peptides recognized by the CD8+ or CD4+ T lymphocytes clones derived from donors 8, 12, 15, and 20 after ALVAC-pp65 stimulation of CD25- PBMC1

 

    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Different technologies may be considered for the enrichment of Ag-specific T lymphocytes. If the Ag is known already, i.e., the HLA-restricting molecule and the peptide presented, then soluble MHC tetramers, initially developed by M. Davis and colleagues (24) provide an elegant and powerful tool for the purification of Ag-specific T cells. Indeed, numerous recent seminal studies relied on this new technology. Another approach allowing detection and purification of live Ag-specific T cells has been developed by J. Scmitz and colleagues in Germany (25). Their method relies on the capability of memory/effector CD4+ (Th1-type) and CD8+ T cells to secrete cytokines such as IFN-{gamma} following a short-term antigenic restimulation with synthetic peptides. To purify IFN-{gamma}-secreting cells, the authors developed a so-called affinity matrix technology, which first consists in creating an affinity matrix for IFN-{gamma} on the cell surface using Ab-Ab conjugates directed against CD45 and IFN-{gamma} (anti-IFN{gamma}-CD45). Then, specific T lymphocytes are allowed to secrete IFN-{gamma} for a short period of time, which then relocate on the Ab-Ab conjugates. Next, IFN-{gamma} is stained with a PE-conjugated IFN-{gamma}-specific Ab, and finally, magnetic activated cell sorting using anti-PE Ab microbeads can enrich PE-labeled cells. The efficiency of this procedure has been shown for Flu 58–66 peptide-specific IFN-{gamma}-producing T cells and for recombinant tetanus toxoid Th2-type IL4-secreting CD4+ T lymphocytes.

The tetramer technology is limited to T cells with known specificities. The affinity matrix technology is limited to T cells that secrete a particular cytokine. This former limitation can become a significant concern if one wants to recover T cells from all components of a particular memory T cell repertoire. For example, it has been recently demonstrated that immunological memory is displayed by distinct T cell subsets: CD45RA-CCR7+ cells corresponding to lymph node-homing cells lacking inflammatory and cytotoxic function (defined by the authors as central memory T cells) and CD45RA-CCR7- cells corresponding to tissue-homing cells having various effector functions and, in particular, the ability to secrete IFN-{gamma}, IL-4, and IL-5. The authors defined these cells as effector memory T cells. Because different memory subsets display different cytokine profiles, this could render their global purification even more complicated using the affinity matrix technology.

Clonal amplification is the basis of the T cell response, and CD25 expression is a prerequisite for T cell proliferation. Curiously, although CD25 selection had been considered >10 years ago for the enrichment of specific T cells before cloning (22), to our knowledge, no systematic approach for direct amplification of Ag-specific T cells using this principle has been developed so far. The end point of the present work was to find a clinically suitable strategy able to select in any genetic background the memory T cell repertoire specific for a viral protein.

We demonstrated that virus-specific memory T cells can be purified through CD25 selection after direct stimulation of PBMC with a peptide, a mixture of peptide, and finally a viral vector encoding an entire protein. In particular, direct purification of pp65-specific CD8+ and CD4+ T cells after a single PBMC stimulation with a canarypox viral vector encoding the entire pp65 protein strongly suggests that this method is probably bound to become the most straightforward approach to purifying specific memory T lymphocytes against a protein of interest, irrespective of their genetic background. After ALVAC-pp65 stimulation, pp65-specific T lymphocytes could be isolated from six of 11 of the CMV seropositive donors tested. Five of these six donors presented both a CD8+ and a CD4+ positive response. Several reasons can account for the fact that pp65-specific T lymphocytes were not isolated from all the donors tested. Although early studies have suggested that the human CTL response to CMV is dominated by CTL against pp65 (28), the major immediate early protein (IE-1) has also been recognized as an important CTL target; thus, for some donors, the frequency of pp65-specific T cells may have been too low to be isolated by our technique. In addition, Kern et al. (29) demonstrated that in some individuals, CD8+ T cells recognized IE-1 but not pp65. Nevertheless, we do not favor the latter explanation because in Kern’s experience, all donors nonresponsive to pp65 were HLA-A2 negatives, contrary to all the donors tested in the present study.

Although we demonstrated the possibility of probing the T cell repertoire for the presence of yet unknown specificities, other strategies may be consider to this end. Intracellular cytokine staining and ELISPOT assays have been used successfully for enumeration and characterization of Ag-specific CD4+ and CD8+ T cells (1, 2), and indeed have proved to be quite useful for T cell epitope mapping (3). If obtaining the corresponding Ag-specific T cell populations in culture is not necessary, these latter strategies are obviously less cumbersome. In contrast, in as far as live Ag-specific T cell purification is required, these methods cannot be used. To isolate as many Ag-specific T cells as possible, two other methods are currently practical: the use of tetrameric complexes or the affinity matrix technology. As stated previously, tetramer technology is limited to T cells with known specificity, and the affinity matrix technology is limited to T cells that secrete a particular cytokine. Each method presents some advantages and some drawbacks, depending on the application. For example, tetramer are best suited to enumerating T cells with already known specificity and T cells that are independent of their functional status (30, 31). In contrast, the affinity matrix technology enables selective isolation of Ag-specific T cells with particular cytokine-mediated effector function (25).

In general terms, the CD25 strategy is not limited by a structural criterion (that is, the MHC-peptide complex of the tetramer) nor by a specific functional status (that is, the ability to secrete a particular cytokine). Moreover, anti-CD25 mAb are widely available compared with tetrameric complexes or the Ab-Ab conjugates required by the affinity matrix technology. Beyond their particular advantages for specific application, it is, to date, difficult to compare the intrinsic performance of each protocol in term of efficiency for purification. Indeed, although data concerning Ag-specific T cell detection are numerous, data concerning Ag-specific T cells purification using these protocols are sparse. In any case, efficiency of cell purification is greatly influenced by the percentage of specific cells in the sample (32). Because in the context of a clinical application we don’t have the choice of the initial sample, purity is likely to remain a poorly predictable parameter. To our understanding, the only way to ensure 100% purity of the selected population would be to clone directly T cells after the purification step and to test individual clones for specificity before pooling them to obtain a polyclonal, yet pure, Ag-specific T cell population. In addition, in the context of allotransplantation, one can consider the possibility of using the same protocol, but for negative selection, deleting alloreactive T cells from the sample before positive selection of viral Ag-specific T cells. Aside from purity, the total number of T cells recovered is also an important parameter to be considered. Indeed, after selection, Ag-specific T cells have to be amplified to reach sufficient number for further testing and/or for reinjection. For many years, nonspecific stimulation procedures have been used to amplify T lymphocytes (33, 34). When optimal, such procedures allow amplification of all T cells present in the culture and consequently do not affect their initial diversity (18). These methods rely on the use of large excess of autologous (when available) or allogeneic feeder cells made of PBMC, BLCL, a polyclonal T cell activator such as PHA or an anti-CD3, and IL-2. The growth rate of T lymphocytes cultured under these conditions corresponds to a doubling time of between 24 and 35 h. According to previously published results, therapeutic doses of Ag-specific T cells probably comprise between 108 (4 x 107/m2 for EBV in the experience of C. Rooney et al. (2) and several billions in the case of CMV in the experience of S. Ridell et al. (3)). In the example presented in Fig. 6Goc, 1.3 x 108 pp65-selected T cells were obtained within 13 days with a purity of 64% as detected by IFN-{gamma} production, starting with 108 PBMC. At present, the exact composition a virus-specific T cell repertoire should have to protect or cure a patient is not really known. That is, how many clones against how many Ags; what we have called the "sufficient T cell repertoire" (8). Nonetheless, whatever the number of Ag-specific T cell targeted, it is likely that the time required for their in vitro amplification will not be reduced to less than 2–3 wk. In any case, in the context of clinical application, both the success of the Ag-specific T cell isolation (which will be affected by the frequency and the total number of Ag-specific T cells in the sample) and the biological security of the preparation (associated with the origin of the biological reagent used) will be directly dependant on the initial volume of blood available. The larger the sample, the higher the number of T cell precursors as well as the number of autologous cells are available for use as feeder cells. Finally, the new clinical possibilities offered by the strategy presented can be rapidly tested because its relies on methods and reagents, namely immunomagnetic sorting, canarypox vector, and anti-CD25 mAbs, that have already been validated for clinical applications.


    Acknowledgments
 
We thank Dr. C. Meric (Pasteur-Mérieux), and Dr. J. Tartaglia and Dr. S. Pincus (Virogenetic) for providing the ALVAC vectors. We also thank and Dr. K. Berencsi and Dr. P. Rohrlich for providing information concerning PBMC ALVAC infection. We are also indebted to Dr. Eva Gonczol from the Wistar Institute for her help in designing the stimulation protocol.


    Footnotes
 
1 This work was supported by an institutional grant from Institut National de la Santé et de la Recherche Médicale, by the Ligue Nationale Contre le Cancer (Comité de Loire-Atlantique), and by Association pour la Recherche en Immuno-cancérologie. Back

2 Addres correspondence and reprint requests to Dr. H. Vié, Institut National de la Santé et de la Recherche Médicale Unité 463, Institut de Biologie, 9 Quai Moncousu, 44035 Nantes cedex, France. E-mail address: hvie{at}nantes.inserm.fr Back

3 Abbreviations used in this paper: BLCL, B lymphoblastoid cell line; HS, human serum; MOI, multiplicity of infection; HCMV, human CMV; MG, myasthenia gravis. Back

Received for publication October 13, 2000. Accepted for publication August 9, 2001.


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 Materials and Methods
 Results
 Discussion
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