The Journal of Immunology, 2001, 167: 6009-6014.
Copyright © 2001 by The American Association of Immunologists
Antigen Discovery in Chronic Human Inflammatory Central Nervous System Disease: Panning Phage-Displayed Antigen Libraries Identifies the Targets of Central Nervous System-Derived IgG in Subacute Sclerosing Panencephalitis1
Mark P. Burgoon2,*,
Gregory P. Owens*,
Sharon Carlson*,
Amy L. Maybach* and
Donald H. Gilden*,
Departments of
*
Neurology and
Microbiology, University of Colorado Health Sciences Center, Denver, CO 80262
 |
Abstract
|
|---|
The presence of increased IgG in the brains of humans with
infectious and inflammatory CNS diseases of unknown etiology such as
multiple sclerosis may be a clue to the cause of disease. For example,
the intrathecally synthesized oligoclonal bands in diseases such as
subacute sclerosing panencephalitis (SSPE) or cryptococcal meningitis
have been shown to represent Ab directed against the causative agents,
measles virus (MV), or Cryptococcus neoformans,
respectively. Using SSPE as a model system, we developed a strategy to
identify the antigenic targets of the intrathecal disease-relevant IgG
in chronic human inflammatory and demyelinating diseases of the CNS.
Libraries of cDNA Ags were displayed on the surface of T7Select
bacteriophage and biopanned on IgG extracted from the brain of an SSPE
patient, or on a monospecific recombinant Fab identified from SSPE
brain. After three or six rounds of biopanning on either Ab, positive
phage-displayed Ags reacting with IgG were enriched to 3577% of all
panned clones. Sequence analysis of the positive clones identified
fragments of the nucleocapsid protein of MV, the cause of SSPE. The
sensitivity of the system was determined by diluting the positive
clones from this SSPE phage-displayed library at a ratio of
10-6 into another phage-displayed library that did not
contain any detectable MV Ags; after six rounds of panning, the
positive clones comprised 34% of all phage and were also shown to be
MV nucleocapsid specific. This strategy will be useful to identify
potentially rare Ags in diseases of unknown
cause.
 |
Introduction
|
|---|
The
increased IgG and oligoclonal bands
(OGBs)3 found in the
brains of humans with infectious CNS diseases have been shown to be Ab
directed against the causative agent (reviewed in Ref. 1).
For example, OGBs in the cerebrospinal fluid (CSF) of patients with
disorders such as cryptococcal meningitis, mumps meningitis,
progressive rubella panencephalitis, HSV encephalitis, HTLV-1
myelopathy, subacute sclerosing panencephalitis (SSPE), and Lyme
disease are directed against the respective fungus, virus, or bacterium
(2, 3, 4, 5, 6, 7, 8). In SSPE, a chronic progressive measles virus (MV)
infection of brain (9),
95% of the CNS IgG is
synthesized locally (10), and 2575% of the CNS Ab is
directed against MV (7, 11). Additional IgG reactivities
in the CSF of SSPE patients have been detected against other viruses,
as well as myelin basic protein and various oligodendrocyte proteins
(12, 13, 14, 15). However, the pathogenic role of these
autoantibodies is not clear, since Abs to myelin basic protein and
myelin oligodendrocyte glycoprotein are frequently found in
patients with various nondemyelinating neurologic conditions
(16). It is also not known whether such minor reactivities
contribute to the robust and persistent humoral immune response present
in many chronic CNS inflammatory diseases. The complexity of these
immune responses may indicate a link between persisting viruses and
autoimmunity through mechanisms such as molecular mimicry or the
unveiling of cryptic self epitopes (17, 18, 19). Nevertheless,
the dominant humoral response of intrathecal IgG in chronic
inflammatory diseases of the CNS appears to be directed against the
cause of disease. OGBs are also present in the brains of several
inflammatory CNS diseases of unknown cause, such as multiple sclerosis
(MS) and CNS sarcoidosis. Although OGBs are found in 88100% of CSF
from MS patients, their corresponding Ags are unknown (1, 20). We predict that identification of the antigenic targets of
the OGBs will help to understand the pathogenesis and even the cause of
these diseases.
In this study, we describe a strategy to identify the Ag targets of the
IgGs present in the CNS of a patient with SSPE, a chronic inflammatory
encephalitis caused by MV. We constructed phage-display Ag libraries in
the T7Select vector from mRNA expressed in the brain of an SSPE
patient. The libraries were biopanned on IgG extracted from SSPE brain,
as well as on a monoclonal Fab specific for the MV nucleocapsid, to
determine whether such IgG could capture their specific Ags.
 |
Materials and Methods
|
|---|
Brain tissue, cDNA library construction, and IgG isolation
Pathologically verified SSPE brain of a 22-year-old man
(CNL) was removed at death, frozen quickly, and stored at
-70°C. Total RNA was extracted with guanidinium isothiocyanate and
acid phenol (21). Poly(A)+ RNA was
isolated and used previously to synthesize and directionally clone cDNA
into a
ZAP (Stratagene, La Jolla, CA) cDNA expression library
(22). The cDNA was size selected for inserts containing
>400 nt before insertion into the vector, resulting in a directionally
cloned library with an average insert size of 1.5 kb and a complexity
of 9 x 105 PFU. A second cDNA expression
library was also constructed in
ZAP from the postmortem brain of a
55-year-old woman with MS (23).
IgG was purified from SSPE brain tissue. Briefly, frozen brain was
homogenized in TBS and centrifuged, and the insoluble pellet was
rehomogenized in TBS. Soluble fractions were combined, and IgG was
extracted by protein A-affinity chromatography, as described elsewhere
(24). The MV nucleocapsid-specific Fab 4, purified from an
SSPE brain by panning a Fab phage-display library on MV-infected Vero
cells (25), was also used as Ab. After digestion of the
selected pCOMB3H bacteriophage clones with
SpeI/NheI restriction endonucleases, soluble Fabs
were released into the culture media and purified by affinity
chromatography on protein A-Sepharose.
Phage-display library construction
Ag phage-display libraries were constructed in the T7Select10-3b
vector (Novagen, Madison, WI). cDNA from the SSPE
ZAP library
(described above) were first isolated as excised Bluescript plasmid DNA
(Stratagene), and then purified from the Bluescript backbone by
restriction with BamHI/XhoI enzymes and agarose
gel extraction using the Qiaquick Gel Extraction kit (Qiagen, Valencia,
CA). Inserts were subcloned into the T7Select10-3b vector by three
separate strategies to maximize in-frame expression of the cDNAs on the
T7 phage surface (see Table I
): A, cDNA was partially restricted with
AluI, purified from agarose gels, and 240 ng was ligated
with 500 ng of T7Select10-3b digested with SmaI (3:1 molar
ratio), resulting in a library with a complexity of 1.5 x
106 PFU; B, cDNA was partially restricted with
Sau3A1 and purified, and 1 µg was ligated into the BamHI
site of T7Select10-3b vector; and C, cDNA inserts from the
ZAP
library were directly subcloned into the
BamHI/XhoI sites of T7Select10-3b. The libraries
were packaged using T7 packaging kits (Novagen) and amplified by
infection of log-phase BLT5615 bacteria
(A600 = 0.6) in 50 ml of
Luria-Bertani broth according to the manufacturers
instructions.
Selection of IgG-binding clones
The three SSPE T7 libraries (Table I
) were mixed proportionate
to their complexities. The combined library was amplified on the day
before panning by infection of 50 ml of log-phase BLT5615 cells
(A600 = 0.6) with 50 µl of mixed
phage library in the presence of 1 mM isopropyl
-D-thiogalactoside, with continued incubation
at 37°C until lysis was visible and centrifugation of the lysate at
8000 x g for 10 min. The phage-containing supernatant
was biopanned on IgG. A total of 1 µg of brain IgG or 300 ng of Fab
in 100 µl was incubated overnight at 4°C in each of two wells of a
96-well microtiter plate (Costar 3590; Costar, Cambridge, MA). Wells
were rinsed twice with distilled water and blocked with 5% nonfat milk
in TBS for 1 h at 37°C. The SSPE phage library supernatant was
added directly to the wells for panning. In separate experiments, the
SSPE library was diluted into a phage-display library constructed from
a MS brain and devoid of any MV Ags. The proportion of SSPE
IgG-reactive clones in the mixture with MS-derived clones was 1 x
10-4 or 1 x 10-6.
After addition of 100 µl of phage supernatant to each well, the plate
was sealed and incubated at 37°C for 1 h and washed five times
with TBS/0.05% Tween 20 (TBST), and bound phage was eluted by
incubation of 200 µl of 1% SDS for 10 min, followed by scraping the
well surface with a pipette tip. The elution buffer from both wells was
combined, and phage was titered by serial dilution and infection of 250
µl of BLT5615 cells for 15 min, followed by growth overnight at room
temperature on 100-mm Luria-Bertani agar plates containing 50
µg/ml carbenicillin. The remainder of the eluted phage was amplified
by infection of 50 ml of log-phase BLT5615 cells as above, and phage
lysate supernatants were used the following day in subsequent
panning.
Analysis of biopans
After each pan, amplified lysate of the eluted phage was plated
at limiting dilution by infection of 250 µl of BLT5615 cells, as
described above. Replica nitrocellulose filters were lifted from plates
containing 300500 PFU, blocked in TBS/3% BSA for 1 h at room
temperature, and incubated with 5 µg/ml panning substrate IgG or Fab
in blocking buffer overnight at room temperature with agitation.
Filters were washed five times for 5 min each time with TBST and
incubated for 1 h with 1/300 dilution of goat anti-human IgG
Ab conjugated to alkaline phosphatase (Vector Laboratories, Burlingame,
CA). Filters were washed five times for 5 min each time with TBST, and
Ab-positive plaques were visualized with nitroblue tetrazolium. The
total number of PFU was counted on each plate, as well as the number of
PFU reacting with Ab. After overlaying the culture plate on the filter,
positive plaques were randomly picked from the final pan in each
experiment with sterile pipet tips. cDNA inserts from those clones were
PCR amplified using the primers T7Up2 (5'-cggaccagattatcgctaagt-3') and
T7Down2 (5'-ggttcaccgatagacgccag-3'), located adjacent to the cDNA
multiple cloning site in the T7Select10-3b vector. PCR products
were then sequenced with each primer at the University of
Colorado Cancer Center DNA Sequencing and Analysis Core (Denver,
CO). The identity of the insert sequence was determined by BLAST
comparison with the GenBank database
(http://www.ncbi.nlm.nih.gov/BLAST/). Alternatively, PCR-amplified
products of the positive clones panned on recombinant Fab were
electrophoresed in agarose gels, transferred to nitrocellulose, and
hybridized with a 32P-labeled cDNA encoding the
entire MV nucleocapsid transcript (26).
 |
Results
|
|---|
Phage-displayed Ag libraries were constructed from the postmortem
brain of a 22-year-old SSPE patient in three subcloning strategies,
using the repertoire of cDNA inserts contained in a previous expression
library in the
ZAP vector (22). cDNA was excised by
BamHI/XhoI restriction digestion and
directionally cloned into the corresponding sites of the T7Select10-3b
phage display vector (library C in Table I
). In addition, the cDNA was partially
digested with AluI or Sau3A1 and cloned into the
SmaI or BamHI site of T7Select10-3b, respectively
(libraries A and B). These partially restricted libraries contain many
smaller inserts than the BamHI/XhoI library, and
are likely to contain expression products from cDNAs too large to
easily clone into the T7 vector. Furthermore, each of the two partially
restricted libraries is likely to express epitopes that may be
interrupted in the other libraries by the restriction digestion.
Although the full-length cDNA library (C) contained only 200,000
distinct clones, the partially restricted libraries (A and B) contained
1.5 x 106 and 11 x
106 clones, respectively, several times the
complexity of the original CNL library in
ZAP.
Before panning, the three T7 libraries were combined according to their
relative complexities, so that the mixture contained phage from each
library proportional to its size. Approximately 3 x
1010 of the resulting mixture was incubated in
two wells of a microtiter plate preadsorbed with SSPE IgG from CNS
tissue (Fig. 1
). After washing the plate,
bound phage were eluted with 1% SDS and amplified by infection of
bacterial cultures. The amplified lysates were then reapplied to
additional IgG in subsequent pans for further enrichment of Ab-specific
clones. In parallel, the same phage-displayed Ag libraries were
biopanned on wells adsorbed with a monospecific recombinant Fab
directed against the MV nucleocapsid protein (25). After
three to six pans on either Ab, an equivalent number of PFU was plated
from each pan. Replica filters were lifted from the plates and
immunoblotted with the IgG used as the panning substrate (Fig. 2
). This blot provided a convenient assay
to measure the proportion of Ab-specific clones and to determine
whether additional rounds of panning were necessary. The number of
positive plaques was determined for each pan and expressed as a
proportion of the phage eluted during that pan. Immunoblotting revealed
1% positive clones in the initial SSPE phage-display libraries
(Table II
). However, after three rounds
of panning on the IgG purified from SSPE brain, positive clones
comprised 77% of all eluted phage. In similar pans on the MV
nucleocapsid-specific Fab, 35% of all eluted phage were positive after
six rounds. The total number of eluted phage at each pan typically
increased with increasing proportions of positive phage, providing an
additional measure to monitor clone enrichment.

View larger version (16K):
[in this window]
[in a new window]
|
FIGURE 1. Panning strategy. Phage-displayed Ag libraries were incubated in wells
containing IgG substrates and washed, and bound phages were eluted with
1% SDS. An aliquot of the eluted phage was titered on bacterial
plates, and the remainder of the eluted phage was amplified by
infection of BLT5615 bacterial cultures and reapplied to a fresh
microtiter plate adsorbed with additional IgG for subsequent
biopanning. Phage that was titered on bacterial plates was
immunoreacted on replica filters for the detection of positive
clones.
|
|

View larger version (39K):
[in this window]
[in a new window]
|
FIGURE 2. Detection of positive clones by immunodetection. Eluted phage from each
pan were plated at limiting dilution to densities of 300500 PFU/dish.
Replica nitrocellulose filters were lifted from each dish and reacted
with the panning substrate IgG. Positive clones were detected by
reaction with alkaline phosphatase-conjugated secondary Ab and
nitroblue tetrazolium. Positive clones were enriched on substrates of
either SSPE IgG (SSPE 214) or monospecific MV nucleocapsid Ab
(anti-N Fab 4), from very low numbers in the initial pans to a
large percentage of the total PFU in later rounds.
|
|
The sensitivity of the panning procedure for selecting specific Ags was
extended by diluting the Ag libraries before panning. The three SSPE
phage-displayed libraries were mixed with a separate T7 phage-display
library constructed from the postmortem brain of an MS patient, a
library that contained no PCR-amplifiable fragments of any MV
components and no positive phage by immunoblotting with SSPE Abs.
Although we have detected anti-MV Abs in other MS cases, the IgG
from this MS brain failed to immunoblot MV lysates or stain SSPE brain
sections (data not shown). The resulting diluted libraries contained
positive clones for SSPE Ab at a dilution of
10-4 or 10-6. The
libraries were then panned on the SSPE IgG, as described above. After
only three rounds of selection, the positive clones initially diluted
to 10-4 enriched to 37% of all eluted phage
(Table III
). In parallel panning
experiments, the SSPE library was initially diluted to
10-6 positive clones in the background of the MS
library. This panning required six rounds of selection to enrich the
positives to similar levels of 34% (Table III
). Replica filters lifted
from each panning round were immunoblotted with the selecting Ab.
Although no positive clones were detected on titration plates from the
early rounds, they rapidly accumulated in later rounds (Fig. 3
).

View larger version (27K):
[in this window]
[in a new window]
|
FIGURE 3. Sensitivity of selecting rare Ags by biopanning. Rare Ags were selected
even after diluting the proportion of positive clones in the SSPE
libraries to 10-4 and 10-6 in a phage-display
library known to contain no reactive clones. Although no positive
clones were detected on plates containing 300500 PFU from initial
pans, the number of positives increased to a large proportion of the
total eluted phage after three or six pans.
|
|
After high enrichment of IgG-reactive phage, a random sample of the
positive plaques was picked from the culture plate after alignment to
the immunoblotted filter, and the displayed Ags in the phage were
identified. The clones selected on the SSPE IgG were identified by
sequence analysis of the respective cDNA inserts. Initially, five
positive plaques were picked after the last round of panning with the
undiluted library and each of the diluted libraries. The cDNA insert
from each clone was PCR amplified using adjacent primers in the
T7Select10-3b vector, and the PCR fragment was sequenced at the
University of Colorado Cancer Center Core sequencing facility. Fourteen
of these 15 sequences revealed distinct, but overlapping clones,
representing a small region of the MV nucleocapsid gene. All of the 14
clones terminated at a natural Sau3A1 site found in the nucleocapsid
sequence (Fig. 4
). The last sequence was
a nonoverlapping clone of the same nucleocapsid gene. For the clones
selected on the recombinant anti-nucleocapsid Fab, 10 plaques were
randomly picked, PCR amplified, and analyzed by gel electrophoresis.
Four distinct sets of similarly sized cDNA fragments were revealed.
Hybridization of these fragments to a 32P-labeled
probe representing the MV nucleocapsid cDNA revealed 9 positive clones
of the 10 examined (data not shown).

View larger version (16K):
[in this window]
[in a new window]
|
FIGURE 4. Identification of MV clones selected on SSPE 214 IgG. Most clones
identified after panning the SSPE library on SSPE 214 IgG, including
those from early pans of the diluted libraries, were MV nucleocapsid
specific. Each cDNA is aligned with the nucleocapsid transcript
(numbers indicate nucleotide start and end points of the cDNAs).
Asterisks denote multiple identifications of particular clones.
|
|
To search for selected phage-displayed clones representing different MV
proteins or clones that may represent autoimmune Ags other than MV, 30
additional phage that reacted with SSPE IgG were picked from early pans
in which the proportion of positives was only 23% (in Table III
, Pan
2 for the 10-4 panning or Pan 4 in the
10-6 panning). Many of these additional clones
were also chosen for their weaker reactivity with the SSPE IgG, and
therefore may have represented secondary immune responses in the SSPE
brain. Most of the cDNAs identified in these additional clones encoded
the same regions of the MV nucleocapsid gene, or different regions of
that gene (Fig. 4
). One clone encoded the 5' untranslated region of a
human small ribonucleoprotein (accession number XM018380). However, the
peptide that is expressed in T7Select phage at the 5' end of this clone
(RPRRRGAAAGDA) did not demonstrate homology to any measles sequence, or
any other sequence in the Swisprot or translated GenBank databases. The
SSPE IgG reacts weakly with this phage, but it is not known what this
epitope represents.
 |
Discussion
|
|---|
In other chronic inflammatory CNS diseases of humans in which
oligoclonal bands (OGBs) of IgG are present, the immunologic targets of
the OGBs have been shown to be the causative agent of the disease
(reviewed in Ref. 1). However, in other human inflammatory
and demyelinating CNS diseases that contain OGBs, such as MS, CNS
sarcoidosis, Behcets disease, and many of the vasculitides, the cause
is unknown. We have developed a strategy to identify the antigenic
targets of the OGBs present in the CNS, particularly when the Ag is
present at low abundance. Rare Ags displayed on the surfaces of a phage
library can be enriched and amplified to enhance detection and
identification. Using SSPE as an experimental paradigm, we have
demonstrated that Ags in the brain, including those from pathogens, can
be displayed on phage surfaces and biopanned on CNS-derived IgG. The
enrichment and identification of the corresponding Ags, in this case
MV, identified the target of the immunologic response and the etiologic
agent of the disease.
To maximize the probability of expressing all transcripts in brain, we
used three separate strategies to construct Ag-display libraries from
an SSPE brain in the T7Select vector. In addition to full-length cDNAs
from the original
library, we subcloned smaller fragments of the
cDNAs from partial digests with two distinct restriction endonucleases,
AluI and Sau3A1. In this way, cDNAs subcloned from one
internal site (e.g., AluI) that do not allow in-frame
expression in T7 may be properly expressed from a different site (e.g.,
Sau3A1). Partially restricted cDNA inserts also increased the
probability that each epitope is expressed, either from its nearest
upstream restriction site or from a more distant site.
The biopanning of phage-displayed Ag libraries on IgG substrates allows
the selection and enrichment of specific Ags. All of the positive
clones identified from the last pans in our experiments were cloned
into the BamHI site of the T7Select vector, and thus were
derived from the largest library B. Positive clones picked from earlier
pans were also derived from library B, except for one positive clone
from the 10-6 panning experiment that was
derived from the AluI library (A). The selection of the
majority of clones from the largest library may simply reflect the
relative contribution of the libraries to the original phage
population.
The rate of enrichment, i.e., the number of pans necessary before an Ag
is clearly distinguished and readily picked from a plate of only
several hundred clones, depends in part on the selecting Ab. As shown
in Table II
, the SSPE library panned on IgG from the brain yielded 77%
positive clones in the population eluted from the third pan, whereas
the same library panned on a monospecific Fab required six rounds to
recover 35% positive clones. The faster enrichment of clones with
brain IgG may be expected if such IgG selects multiple epitopes from a
single Ag (Fig. 4
).
The vast majority of the clones selected on SSPE IgG encoded the
nucleocapsid protein (Fig. 4
). Although many of the clones overlapped
the same region of the nucleocapsid sequence, distinct sets of clones
would have translated from distinct sites in the nucleocapsid
transcript, indicating that they represented different clones in the
original library that were probably coselected due to the common
epitopes, rather than a population derived from one predominant or
fast-growing clone.
Although from other SSPE brains we have identified IgG reactivities to
other MV components, including high affinity reactivities to the
phosphoprotein (25, 27), the IgG from the SSPE brain used
in the current study selected almost exclusively nucleocapsid clones,
and is consistent with other studies that demonstrate a high reactivity
for the MV nucleocapsid (28, 29). Indeed, intrathecally
synthesized IgG from SSPE patients has detected multiple MV components
(24, 25, 27, 30, 31, 32). However, this Ag-panning technique
may prove more useful for determining the major reactivities exhibited
by the IgG. The detection of minor or multiple reactivities of IgG in
other chronic inflammatory CNS diseases using this panning strategy may
be hindered by the very rapid enrichment of high affinity phage-bound
Ags. However, the selection of clones at early panning stages may
reveal different Ags with widely differing reactivities. In this study,
clones selected from early pans revealed a larger set of MV
nucleocapsid clones than those selected in the last pans, as well as
one clone unrelated to MV. Although the SSPE IgG used in this study has
only immunostained SSPE brain containing MV, and not control brains
from MS patients (data not shown), the identification of this
additional clone as a non-MV Ag also demonstrates the potential for
selecting self Ags as well as exogenous ones with IgG extracted from
the CNS. This may be possible even in the presence of an overwhelming
response to a single Ag, as seen in this study.
In addition to the MV clones, one clone was selected with SSPE IgG that
expressed a peptide from the 5' untranslated region of the human
ribonucleoprotein. Although surprising, the peptides antigenicity is
more likely to represent a related reactivity for a different non-MV Ag
in the SSPE brain, which was not suggested by homology searches of
various protein databases. This non-MV reactivity in SSPE may reflect
the autoimmune response seen in several SSPE studies
(12, 13, 14, 15).
Our panning strategy requires that the Ag persist in the tissue used to
produce the Ag library, and is most useful to select and amplify
low-abundance Ags that may otherwise be undetectable. This is likely to
occur in chronic CNS conditions that demonstrate persistent OGB
profiles, a condition that probably requires continued antigenic
stimulation to maintain OGB production. However, the initial
IgG-stimulating Ag might not be present when the Ag library is
constructed, or its transcripts might be degraded during the cDNA
synthesis. Alternative strategies have been developed for the panning
of phage-displayed libraries of synthetic peptides to identify
IgG-binding motifs (33, 34). However, the panning of short
oligomeric peptides works best on substrates of single or highly
restricted IgGs, since the antigenic correlates of the bound phage are
best discerned from the presence of common sequences or motifs in the
eluted phage-bound peptides and from their subsequent alignment to
sequence databases. Multiple IgG reactivities may select populations of
diverse peptide motifs, complicating the identification of shared
sequences. Furthermore, the phage-displayed cDNA libraries described in
this work typically provide larger sequences in the selected clones to
accurately identify the endogenous Ag.
Our phage-display Ag library strategy provides several advantages over
previous techniques used for Ag identification, such as expression
library screening (35). First, the phage-displayed panning
of Ags requires far less IgG to detect and isolate the positive clones
than the hundreds of micrograms typically required in extensive
screening of
expression libraries. Second, the panning technique
enables more rapid screening of a cDNA library displayed on phage, with
the potential to examine a complex library containing
>107 clones in 12 wk and limited only by the
complexity of the constructed library. Phage-displayed panning of
cDNAs has been successfully used to identify Ab-binding epitopes in
tobacco mosaic virus and hepatitis C core proteins, as well as ligands
for transcription factors, lipocalin, and type 1 plasminogen activator
inhibitor (36, 37, 38, 39, 40).
Our data demonstrate that phage-displayed Ag libraries constructed from
the brains of chronic human inflammatory CNS diseases can be used to
select and identify the appropriate Ags targeted by the humoral
response, even to enrich relatively rare clones present in a complex
library. This method will identify persistent Ags without bias to their
pathogenic or autoimmune nature, and will be useful in identifying
disease-relevant Ags in other CNS inflammatory diseases of unknown
cause.
 |
Acknowledgments
|
|---|
SSPE brain was kindly provided by the National Neurological
Research Specimen Bank, Veterans Administration Medical Center
(Los Angeles, CA). We thank Marina Hoffman for editorial review and
Cathy Allen for preparing this manuscript.
 |
Footnotes
|
|---|
1 This study was supported in part by Public Health Service Grant NS 32623. 
2 Address correspondence and reprint requests to Dr. Mark P. Burgoon, Department of Neurology, University of Colorado Health Sciences Center, 4200 East Ninth Avenue, Mailstop B183, Denver, CO 80262. E-mail address: mark.burgoon{at}uchsc.edu 
3 Abbreviations used in this paper: OGB, oligoclonal band; CSF, cerebrospinal fluid; MS, multiple sclerosis; MV, measles virus; SSPE, subacute sclerosing panencephalitis. 
Received for publication March 5, 2001.
Accepted for publication September 14, 2001.
 |
References
|
|---|
-
Gilden, D. H., M. E. Devlin, M. P. Burgoon, G. P. Owens. 1996. The search for virus in multiple sclerosis brain. Multiple Sclerosis 2:179.[Medline]
-
Porter, K. G., D. G. Sinnamon, R. R. Gillies. 1977. Cryptococcus neoformans-specific oligoclonal immunoglobulins in cerebrospinal
fluid in cryptococcal meningitis. Lancet i:1262.
-
Vandvik, B., E. Norrby, J. Steen-Johnson, K. Sensvold. 1978. Mumps meningitis: prolonged pleocytosis and occurrence of mumps virus-specific oligoclonal IgG in the cerebrospinal fluid. Eur. Neurol. 17:13.[Medline]
-
Coyle, P. K., J. S. Wolinsky. 1981. Characterization of immune complexes in progressive rubella panencephalitis. Ann. Neurol. 9:557.[Medline]
-
Grimaldi, L. M., R. P. Roos, S. G. Devare, J. M. Casey, Y. Maruo, T. Hamada, K. Tashiro. 1988. HTLV-I-associated myelopathy: oligoclonal immunoglobulin G bands contain anti-HTLV-I p24 antibody. Ann. Neurol. 24:727.[Medline]
-
Grimaldi, L. M. E., R. P. Roos, R. Manservigi, P. G. Spear, F. D. Lakeman, R. J. Whitley. 1988. An isoelectric focusing study in herpes simplex virus encephalitis. Ann. Neurol. 24:227.[Medline]
-
Vandvik, B., E. Norrby, H. J. Nordal, M. Degre. 1976. Oligoclonal measles virus-specific IgG antibodies isolated from cerebrospinal fluids, brain extracts, and sera from patients with subacute sclerosing panencephalitis and multiple sclerosis. Scand. J. Immunol. 5:979.[Medline]
-
Martin, R., U. Martens, V. Sticht-Groh, R. Dorries, H. Kruger. 1988. Persistent intrathecal secretion of oligoclonal, Borrelia burgdorferi-specific IgG in chronic meningo-radiculo-myelitis. J. Neurol. 235:229.[Medline]
-
Ter Meulen, V., J. R. Stephenson, H. W. Kreth. 1983. Subacute sclerosing panencephalitis. Comp. Virol. 18:105.
-
Cutler, R. W., E. Merler, J. P. Hammerstad. 1968. Production of antibody by the central nervous system in subacute sclerosing panencephalitis. Neurology 18:129.[Free Full Text]
-
Mehta, P. D., A. Kane, H. Thormar. 1977. Quantitation of measles virus-specific immunoglobulins in serum, CSF, and brain extract from patients with subacute sclerosing panencephalitis. J. Immunol. 118:2254.[Abstract/Free Full Text]
-
Mathiesen, T., H. von Holst, S. Fredrikson, G. Wirsen, B. Hederstedt, E. Norrby, V. A. Sundqvist, B. Wahren. 1989. Total, anti-viral, and anti-myelin IgG subclass reactivity in inflammatory diseases of the central nervous system. J. Neurol. 236:238.[Medline]
-
Gorny, M. K., Z. Wroblewska, D. Pleasure, S. L. Miller, A. Wajgt, H. Koprowski. 1983. CSF antibodies to myelin basic protein and oligodendrocytes in multiple sclerosis and other neurological diseases. Acta Neurol. Scand. 67:338.[Medline]
-
Ruutiainen, J., T. Arnadottir, G. Molnar, A. Salmi, H. Frey. 1981. Myelin basic protein antibodies in the serum and CSF of multiple sclerosis and subacute sclerosing panencephalitis patients. Acta Neurol. Scand. 64:196.[Medline]
-
Panitch, H. S., C. J. Hooper, K. P. Johnson. 1980. CSF antibody to myelin basic protein: measurement in patients with multiple sclerosis and subacute sclerosing panencephalitis. Arch. Neurol. 37:206.[Abstract/Free Full Text]
-
Karni, A., R. Bakimer-Kleiner, O. Abramsky, A. Ben-Nun. 1999. Elevated levels of antibody to myelin oligodendrocyte glycoprotein is not specific for patients with multiple sclerosis. Arch. Neurol. 56:311.[Abstract/Free Full Text]
-
Steinman, L., P. Conlon. 1997. Viral damage and the breakdown of self-tolerance. Nat. Med. 3:1085.[Medline]
-
Levin, M. C., M. Krichavsky, J. Berk, S. Foley, M. Rosenfeld, J. Dalmau, G. Chang, J. B. Posner, S. Jacobson. 1998. Neuronal molecular mimicry in immune-mediated neurologic disease. Ann. Neurol. 44:87.[Medline]
-
Paroli, M., E. Schiaffella, F. di Rosa, V. Barnaba. 2000. Persisting viruses and autoimmunity. J. Neuroimmunol. 107:201.[Medline]
-
Mattson, D. H., R. P. Roos, B. G. W. Arnason. 1981. Comparison of agar gel electrophoresis and isoelectric focusing in multiple sclerosis and subacute sclerosing panencephalitis brains. Ann. Neurol. 9:34.[Medline]
-
Chomczynski, P., N. Sacchi. 1986. Single-step method of RNA isolation by acid guanidium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:156.
-
Smith-Jensen, T., M. P. Burgoon, J. Anthony, H. Kraus, D. H. Gilden, G. P. Owens. 2000. Comparison of immunoglobulin G heavy-chain sequences in MS and SSPE brains reveals an antigen-driven response. Neurology 54:1227.[Abstract/Free Full Text]
-
Owens, G. P., M. P. Burgoon, J. Anthony, B. K. Kleinschmidt-DeMasters, D. H. Gilden. 2001. The immunoglobulin G heavy chain repertoire in multiple sclerosis plaques is distinct from the heavy chain repertoire in peripheral blood lymphocytes. Clin. Immunol. 98:258.[Medline]
-
Owens, G. P., M. P. Burgoon, M. E. Devlin, D. H. Gilden. 1997. Extraction and purification of active IgG from SSPE and MS brain. J. Virol. Methods 68:119.[Medline]
-
Burgoon, M. P., R. A. Williamson, G. P. Owens, O. Ghausi, R. B. Bastides, D. R. Burton, D. H. Gilden. 1999. Cloning the antibody response in humans with inflammatory CNS disease: isolation of measles-specific antibodies from phage display libraries of a subacute sclerosing panencephalitis brain. J. Neuroimmunol. 94:204.[Medline]
-
Sambrook, J., E. F. Fritsch, T. Maniatis. 1989. Molecular Cloning: A Laboratory Manual Cold Spring Harbor Lab. Press, Cold Spring Harbor, NY.
-
Burgoon, M. P., G. P. Owens, T. Smith-Jensen, D. Walker, D. H. Gilden. 1999. Cloning the antibody response in humans with inflammatory central nervous system disease: analysis of the expressed IgG repertoire in subacute sclerosing panencephalitis brain reveals disease-relevant antibodies that recognize specific measles virus antigens. J. Immunol. 163:3496.[Abstract/Free Full Text]
-
Adels, B. R., D. C. Gadjusek, C. J. Gibbs, P. Albrecht, N. G. Rogers. 1968. Attempts to transmit subacute sclerosing panencephalitis and isolate a measles related antigen, with a study of the immune response in patients and experimental animals. Neurology 18:30.[Free Full Text]
-
Salmi, A. A., E. Norrby, M. Panelius. 1972. Identification of different measles virus-specific antibodies in the serum and cerebrospinal fluid from patients with subacute sclerosing panencephalitis and multiple sclerosis. Infect. Immun. 6:248.[Abstract/Free Full Text]
-
Hall, W. W., R. A. Lamb, P. W. Choppin. 1979. Measles and subacute sclerosing panencephalitis virus protein: lack of antibodies to the M protein in patients with subacute sclerosing panencephalitis. Proc. Natl. Acad. Sci. USA 76:2047.[Abstract/Free Full Text]
-
Lin, F. H., P. D. Mehta, H. Thormar. 1982. Precipitation of measles virus proteins by immunoglobulin G fractions containing groups of oligoclonal bands isolated from sera of patients with subacute sclerosing panencephalitis. Infect. Immun. 37:393.[Abstract/Free Full Text]
-
Norrby, E., Y. Gollmar. 1972. Appearance and persistence of antibodies against different virus components after regular measles infections. Infect. Immun. 6:240.[Abstract/Free Full Text]
-
Scott, J. K.. 1992. Discovering peptide ligands using epitope libraries. Trends Biochem. Sci. 17:241.[Medline]
-
Zwick, M. B., J. Shen, J. K. Scott. 1998. Phage-displayed peptide libraries. Curr. Opin. Biotechnol. 9:427.[Medline]
-
Choo, Q. L., G. Kuo, A. J. Weiner, L. R. Overby, D. W. Bradley, M. Houghton. 1989. Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome. Science 244:359.[Abstract/Free Full Text]
-
Holzem, A., J. M. Nahring, R. Fischer. 2001. Rapid identification of a tobacco mosaic virus epitope by using a coat protein gene-fragment-pVIII fusion library. J. Gen. Virol. 82:9.[Abstract/Free Full Text]
-
Pereboeva, L. A., A. V. Pereboev, L. F. Wang, G. E. Morris. 2000. Hepatitis C epitopes from phage-displayed cDNA libraries and improved diagnosis with a chimeric antigen. J. Med. Virol. 60:144.[Medline]
-
Butteroni, C., M. de Felici, H. R. Scholer, M. Pesce. 2000. Phage display screening reveals an association between germline-specific transcription factor oct-4 and multiple cellular proteins. J. Mol. Biol. 304:529.[Medline]
-
Redl, B., P. Merschak, B. Abt, P. Wojnar. 1999. Phage display reveals a novel interaction of human tear lipocalin and thioredoxin which is relevant for ligand binding. FEBS Lett. 460:182.[Medline]
-
Lang, I. M., T. L. Chuang, C. F. Barbas, R. R. Schleef. 1996. Purification of storage granule protein-23: a novel protein identified by phage display technology and interaction with type I plasminogen activator inhibitor. J. Biol. Chem. 271:30126.[Abstract/Free Full Text]
This article has been cited by other articles:

|
 |

|
 |
 
G. P. Owens, A. J. Shearer, X. Yu, A. M. Ritchie, K. M. Keays, J. L. Bennett, D. H. Gilden, and M. P. Burgoon
Screening Random Peptide Libraries with Subacute Sclerosing Panencephalitis Brain-Derived Recombinant Antibodies Identifies Multiple Epitopes in the C-Terminal Region of the Measles Virus Nucleocapsid Protein
J. Virol.,
December 15, 2006;
80(24):
12121 - 12130.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
K. C. O'Connor, H. Appel, L. Bregoli, M. E. Call, I. Catz, J. A. Chan, N. H. Moore, K. G. Warren, S. J. Wong, D. A. Hafler, et al.
Antibodies from Inflamed Central Nervous System Tissue Recognize Myelin Oligodendrocyte Glycoprotein
J. Immunol.,
August 1, 2005;
175(3):
1974 - 1982.
[Abstract]
[Full Text]
[PDF]
|
 |
|