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Institute of Parasitology, McGill University, St. Anne de Bellevue, Quebec, Canada; and
Department of Microbiology and Immunology, McGill University, Montreal, Canada
| Abstract |
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40% of the genes
whose expression was detected in macrophages were down-regulated during
infection with L. donovani. However, several genes were
also induced during the infection process, some of which could play a
role in recruitment of additional macrophages to the site of infection.
Taken together, the general suppression of gene expression in addition
to the selective induction of key genes is likely to play an important
role in allowing the parasite to survive and proliferate within its
host macrophage cell. | Introduction |
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During an established infection, Leishmania has developed
mechanisms to subvert the macrophage microbicidal activity. For
example, L. donovani amastigotes interfered with the
expression of MHC II molecules following stimulation with IFN-
(reviewed in Ref. 2) and the B7-1 costimulatory molecule
(3, 4, 5). This infection also results in reduced expression
of IL-1 and TNF-
genes following stimulation with LPS or
Staphylococcus aureus (6, 7, 8). Several reports
have also documented an impairment in signal transduction in infected
macrophages (9, 10, 11, 12).
Although these and other studies have examined the expression of a
variety of specific genes in response to various macrophage ligands,
little is known about what happens to global host cell gene expression
when Leishmania is multiplying within macrophages.
Therefore, we have undertaken to compare the expression of 588
well-characterized genes in noninfected and L.
donovani-infected macrophages using a cDNA expression array
analysis. In this manner, it was possible to obtain a novel perspective
on the effect of infection on macrophage gene expression. Of particular
interest, L. donovani infection resulted in suppression of
40% of the cellular genes whose expression was detectable in
macrophages, although housekeeping genes were expressed at equal levels
in infected and noninfected cells. In addition, L. donovani
infection did also result in an up-regulation of a small number of
genes in macrophages including macrophage inflammatory proteins
(MIP)3 1
and 1
,
which could result in the recruitment of new macrophages to the site of
infection. The selective induction of such genes together with the
widespread suppression of gene expression during infection likely plays
key roles to ensure the suitability of the infected host cell for the
parasite survival and replication.
| Materials and Methods |
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BMM were obtained from femurs of 6- to 8-wk-old female BALB/c mice (Charles River Canada, St. Constant, Québec, Canada) as previously described (8, 10, 12) by flushing femurs with RPMI 1640 complete medium. These cells were incubated in tissue culture dishes (Nunc, Roskilde, Denmark) for 1 day at 37°C in 5% CO2 in moist air in RPMI 1640 complete medium containing 15% (v/v) L929 cell-conditioned medium as a source of M-CSF or CSF-1. After 1 day in culture, the immature nonadherent cells were transferred into new polystyrene culture dishes (Falcon 1029; Fisher, Montreal, Canada), which were weakly adherent for macrophages and were cultured in 15% CSF-1 to induce macrophage differentiation for 7 days. The resulting BMM population was made quiescent by culturing them in CSF-1-free medium for 18 h. Cell viability after scraping was determined by trypan blue exclusion assay, and live cells were counted with a hemocytometer. The quiescent BMM (106 cells/ml) in polystyrene tubes were infected with amastigotes of 1S2D strain of L. donovani at a ratio of 4:1 amastigotes per macrophage for 12 h. Noningested parasites were removed by three washed at low speed (225 x g) with warm RPMI 1640 complete medium. Infection levels were determined by microscopic examination of Giemsa-stained cytocentrifuge preparations. Infected cells were cultured for 4 days before total RNA isolation, at a time when amastigotes are actively proliferating inside the macrophages.
RNA isolation
Total RNA from noninfected and infected BMM was isolated and subjected to DNase treatment to eliminate genomic DNA contamination using Atlas Pure Total RNA Labeling System (Clontech Laboratories, Palo Alto, CA). The integrity of total RNA was confirmed by agarose gel electrophoresis.
Gene array analysis
Gene expression was analyzed using the Atlas Mouse cDNA
Expression Array (Clontech Laboratories). The basic principal of this
technique can be viewed as reverse Northern blotting using several
hundred well-characterized and organized cDNA probes.
Poly(A)+ RNA was enriched from total RNA using
Atlas Pure Total RNA Labeling System (Clontech).
Poly(A)+ RNA enrichment samples were reverse
transcribed in the presence of reverse transcriptase (Clontech
Laboratories) and [
-32P]dATP. The generated
radiolabeled cDNA probes from noninfected and infected cells with a
specific radioactivity of
1.3 x 106 cpm
were purified from unincorporated nucleotides and hybridized to
identical membranes containing the mouse cDNA arrays. Each cDNA array
contains 588 previously characterized mouse genes. Each of the cDNAs on
the array contains 200600 bp of unique sequences lacking a poly(A)
tail, repetitive elements, or highly homologous sequences to minimize
cross-hybridization and nonspecific bindings of the labeled cDNA
probes. The amount of each cDNA fragment on the array contains 10 ng of
DNA immobilized in two adjacent dots, and the strength of the signal is
proportional to the level of the mRNA. Following hybridization,
high-stringency washes were performed and the membranes were subjected
to autoradiography. The hybridization pattern was analyzed with the
AtlasImage 1.1 software package (Clontech Laboratories) specifically
designed for analyzing Atlas Array data. Approximately 50% of the RNA
in the infected cell was derived from L. donovani as
determined by parasite ribosomal RNA levels relative to the macrophage
ribosomal RNA levels. Therefore, two times as much RNA was used from
the infected cell as from the noninfected cell to prepare the
hybridization probes. As detailed in Results, the
hybridization intensity levels were carefully standardized using
several highly expressed housekeeping genes whose respective expression
levels were the same in the infected and noninfected cells.
Northern blot analysis
Total RNA from noninfected and infected BMM was isolated using
Atlas Pure Total RNA Labeling System (Clontech Laboratories). Ten
micrograms of total cellular RNA was denatured by glyoxal at 50°C for
1 h and chilled on ice for 5 min. One microgram of ethidium
bromide was added to each sample before electrophoresis in 1% agarose
gel to fractionate RNA as previously described (13).
Following electrophoresis, RNA was blotted on to Hybond-N nylon
membrane (Amersham, Little Chalfont, U.K.) as recommended by the
manufacturer. The RNA was cross-linked to the membrane using UV
irradiation and prehybridized with 20x SSC phosphate/EDTA, 50x
Denhardt, 50% formamide, 10% SDS, and 10 mg/ml denatured salmon sperm
DNA at 42°C for 3 h. Hybridization was performed at 42°C for
18 h with probes purified from agarose gels and nick translated in
the presence of 125 µCi [
-32P]dCTP (ICN
Biochemicals, Québec, Canada). Membranes were washed once at room
temperature and twice at 55°C with 0.5x SSC for 30 min each and
autoradiographed at -70°C in cassettes on Kodak Bio Max MS films
(Rochester, NY) with Bio Max MS intensifying screens. The mouse
MIP-1
, monocyte chemoattractant protein (MCP)-1 receptor A
(MCP-1RA), and CD40 probes used were the 326-, 297-, and 337-bp cDNA
fragment, respectively, (Clontech Laboratories). To ensure that equal
amounts of RNA were analyzed, blots were stripped, rehybridized with a
radiolabeled cDNA probe for actin (1.25 kb PstI of pBA-1),
washed, and again subjected to autoradiography. When quantified by
scanning densitometry, multiple exposures were used to ensure that all
signals were within the linear response range of the film.
| Results |
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An equal number of viable noninfected and infected BMM were used for
the RNA extraction. RNA was isolated from noninfected BMM that were
made quiescent through culturing in the absence of growth factor for
18 h before harvesting and from BMM that were infected for 4 days.
Poly(A)-enriched RNA was used as the template to prepare the
-32P-radiolabeled cDNA probes. The probes were
then hybridized to two identical gene array membranes that contained an
extensive representation of previously characterized cellular genes
involved in a variety of functions and clustered in six quadrants as
follows: 1) oncogenes, tumor suppressor genes, and cell cycle
regulators; 2) stress response genes, ion channels and transport genes,
and intracellular signal transduction modulators and effectors; 3)
apoptosis-related genes and genes involved in DNA synthesis, DNA
repair, and DNA recombination; 4) transcriptional factors and general
DNA binding proteins; 5) cell surface receptors, and cell adhesion
molecules; and 6) cell-cell communication factors.
To quantify the level of gene expression, the membranes were subjected
to autoradiography and the relative intensity for each gene was
analyzed by using AtlasImage 1.1 software as detailed in
Materials and Methods. To compare transcript levels in
infected and noninfected cells, appropriate internal reference genes
were used for standardization. Conventionally, so called housekeeping
genes are used as internal standards for which we examined the genes
encoding ubiquitin, G3PDH,
-actin, and ribosomal protein S29. As
shown in Fig. 1
, which focuses only on
these four internal standard genes, the transcript levels were equal in
the infected and noninfected cells. Based on these control data showing
a similar level of housekeeping gene expression in the infected and
noninfected cells, it was next possible to examine the expression of
the other genes on the array.
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and MIP-1
genes were up-regulated in the infected cells.
The products from these genes could play a major role in the
recruitment of additional macrophages to the site of infection to
increase the number of potential host cells for the parasite to
infect.
|
) or down-regulated (MCP-1RA and CD40) during
infection. As shown in Fig. 3
mRNA was significantly higher in the infected cells compared
with the noninfected cells, and this is consistent with the gene array
analysis (Fig. 2
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| Discussion |
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to see whether this would reduce the level or spread of
infection. The present study was undertaken to determine the effect of Leishmania infection of global gene expression in host macrophages. For this purpose, a gene array analysis using an appropriate representation of well-characterized genes was undertaken in this study. An unexpected result was the general suppression of a significant percentage of genes during infection. It is noteworthy that this result would also be expected if the analysis was conducted on a microarray containing the entire genome. Although this study was also able to identify the induction of several interesting genes during infection, future studies using a micoarray approach will likely identify significantly more induced genes. Nevertheless, it is clear that the experimental approach described within has been successful in providing novel and significant new insight into this infection process.
Although a significant percentage of the expressed genes were down-regulated during infection, the majority of these were down-regulated by about 2-fold. A 2-fold down-regulation of a few genes may not have a significant effect on the host cell. However, as demonstrated within, almost 40% of the genes whose expression was detectable were down-regulated by 2-fold or greater. Because of this large number of down-regulated genes, this would be expected to have a significant overall effect on the host cell. The down-regulation of these genes likely reduces the capacity of the cell to function normally and thus contributes to the ability of the amastigotes to proliferate in the compromised cell.
However, it is noteworthy that several genes were down-regulated to a much greater extent than 2-fold, and it is of interest to consider the potential role of these genes during infection. For example, the CD40 gene was down-regulated by about 5-fold, and it has been previously shown that activation of macrophages by Th1 cells during the killing of intracellular Leishmania required the interaction between CD40 on the macrophages and the CD40 ligand on the Th1 lymphocytes (18, 19, 20). In addition, CD40 deficiency in resistant mice rendered these animals susceptible to infection with Leishmania major (21). Therefore, down-regulation of expression of the CD40 gene during infection as demonstrated within would enhance the survival of Leishmania.
There was also a more significant reduction in the expression of the
MCP-1RA gene (also referred to as CCR-2) in infected cells as
determined by the gene array analysis, and this was also consistent
with the Northern blot data. This gene encodes the receptor for the MCP
(22). MCP-1RA (CCR-2) knockout mice have been
characterized with an abnormality in monocyte/macrophage migration and
were defective in the production of Th1-generating cytokines including
IFN-
(23). Therefore, down-regulation of MCP-1RA gene
expression could also enhance parasite survival through impairing
migration of the infected cell and reducing the ability to mount an
anti-Leishmania Th1 immune response. Finally, the
proapoptotic gene BAD was also significantly down-regulated,
and this is consistent with our previous observation that infection
results in an inhibition of apoptosis (16). It would be of
interest to undertake a larger examination of genes involved in the
apoptosis process in these cells.
It is also interesting to consider some of the genes that were
significantly induced during infection such as MIP-1
and MIP-1
.
The MIP-1
and MIP-1
gene products are potent chemoattractants for
monocyte/macrophages. These cytokines may be important in attracting
the noninfected immature monocyte/macrophages, which could represent a
safe target into the site of infection because these immature cells can
be infected but would not be expected to kill the parasite.
It will be important in future studies to determine the mechanism in
which both the suppression and induction of gene expression occurs
simultaneously during infection. For example, the general suppression
of gene expression could be due in part to the impairment of signal
transduction pathways of the parasite including the protein kinase C
(9, 10, 11, 12, 24). In fact, this study showed that infection
with L. donovani down-regulated many of proteins that are
important in the intracellular signal transduction pathway including
mitogen-activated protein kinase kinases 1 and 3 as shown in Table I
.
Moreover, infection also resulted in a suppression of general
transcription factors including NF-
B p105 and RelB. These proteins
are all members of the NF-
B/Rel family of transcription factors that
regulate the expression of a variety of genes involved in immune
response, inflammatory responses, and cellular growths (for example,
GM-CSF, IL-2, IL-6, IL-8, etc.) (25). Taken together, the
results from this study reveal that this infection has a remarkable
overall effect on cellular gene expression, and this could provide an
explanation why Leishmania is able to survive in perhaps the
most hostile cellular environment in the mammalian host, the
macrophage cell.
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| Footnotes |
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2 Address correspondence and reprint requests to Dr. Greg Matlashewski, Department of Microbiology and Immunology, McGill University, 3775 University Street, Montreal, Canada H3A 2B4. ![]()
3 Abbreviations used in this paper: MIP, macrophage inflammatory protein; BMM, bone marrow-derived macrophage; MCP, monocyte chemoattractant protein; MCP-1RA, MCP-1 receptor A. ![]()
Received for publication October 27, 2000. Accepted for publication December 21, 2000.
| References |
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prevents parasite-induced inhibition of interleukin-1 production and primes monocytes to respond to Leishmania by producing both tumor necrosis factor-
and interleukin-1. J. Clin. Invest. 85:1914.
B and I
-B proteins: new discoveries and insights. Annu. Rev. Immunol. 14:649.[Medline]This article has been cited by other articles:
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