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Protein Design Labs, Fremont, CA 94555
| Abstract |
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. In carrying out the modifications to
humanize this Ab, we discovered that an initial version displayed
affinity for IFN-
that was slightly less than that of AF2, but
exhibited IFN-
-neutralizing activity that was severely diminished.
Characterization via site-directed mutagenesis revealed that the
majority of this loss in IFN-
-neutralizing activity was due to
altering the VH framework residue at position 11.
VH position 11 is distal to the binding surface of the Ab;
however, it, along with residues 110 and 112, have been identified as
forming the socket of a molecular ball-and-socket joint between the V
and C domains of the Ig Fab, which influences the elbow angle between
these domains. To determine whether disrupting the structure of this
joint was the basis for reduced IFN-
-neutralizing capacity, we
altered residue 148 of CH1, which with residue 149
comprises the corresponding ball portion of the joint. Changing this
single CH1 domain residue diminished the ability of the Ab
to neutralize IFN-
to a level similar to that observed with the
VH alteration. Thus, an intact ball-and-socket joint
between the V and C domains in AF2 is required for potent
neutralization of IFN-
. These results suggest the importance of the
elbow angle between Ig V and C domains in Ab activity, and support the
hypothesis that this joint can be an important functional element of Ab
structure. | Introduction |
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is a cytokine produced by activated T lymphocytes and NK cells that
exhibits a variety of immunoregulatory activities (1, 2, 3).
Possibly the most crucial of these is the role IFN-
plays in the
generation and maintenance of cells of the Th1 lineage (4, 5). As Th1 cells have been implicated in a variety of autoimmune
diseases (6), neutralization of IFN-
is an attractive
approach for the potential treatment of such conditions.
AF2 is a high affinity murine anti-human IFN-
mAb that displays
potent IFN-
-neutralizing activity (7). The determinant
recognized by AF2 has been mapped and is proximal to, but distinct
from, the surface of IFN-
that interacts with its receptor, yet AF2
prevents IFN-
from binding to IFN-
R+ cells
(7).
The neutralizing activity of AF2 makes it a suitable agent for
interfering with IFN-
activity in patients in whom IFN-
may
contribute to the disease state. However, as a murine Ab, AF2 would
elicit a vigorous human anti-mouse Ab response (8).
Humanization is a strategy proven to eliminate most, if not all, of the
human anti-mouse Ab response (9). This technique
involves replacing all residues of a murine Ab not essential for Ag
binding with those that occur in a human Ig molecule. Thus, the murine
C regions of both the H and L chains are replaced with human
counterparts. The H and L chain V regions present more of a challenge,
as retaining only complementarity-determining region
(CDR)2 residues of
the murine Ab is usually insufficient to confer the level of Ag binding
exhibited by the original murine Ab. Additional murine residues
proximal to the CDRs in three-dimensional space are frequently required
to retain the binding affinity and biological activity of the initial
murine Ab (10). Frequently, humanized Abs have affinities
and biologic activities indistinguishable from the murine counterpart,
and in rare instances humanization can actually improve the affinity of
a murine Ab (11).
Successful humanization of murine Abs has now become routine, and
in a number of instances has allowed the therapeutic potential of
murine mAbs to be realized. Four humanized Abs have been approved for
use in humans (12, 13, 14, 15) and several more are in late phase
clinical trials. Thus, as a first step to clinical development of AF2
as an IFN-
antagonist, we undertook humanization of the Ab.
The initial humanized version of AF2 displayed a relative binding
affinity slightly lower than that of the original murine Ab; however,
the capacity to neutralize IFN-
was greatly diminished.
Comprehensive mutational analysis implicated a VH
framework residue distal to the Ag binding site as responsible for the
majority of this loss. This framework residue maps to the interface
between the V and C domains of Igs and has been identified as a
component of a molecular ball-and-socket joint between these domains.
It has been hypothesized that this general structural feature of Abs is
one of functional importance, as it may modulate flexibility between
these domains (16).
In this study, we present evidence that the integrity of the molecular
ball-and-socket joint between V and C domains is essential for full
biologic activity of AF2. Disruption of this joint by alterations in
either the V or C domains profoundly interferes with the biological
activity (neutralization of IFN-
) of this Ab, with little effect on
Ag binding. These results support the contention that the
ball-and-socket joint is a structural element of the Ig molecule that
can possess functional importance.
| Materials and Methods |
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AF2 is a murine anti-human IFN-
mAb previously described
(7). Human rIFN-
was purchased from R&D Systems
(Minneapolis, MN). Hs294T, COS-7, and L243 cells were obtained from
American Type Culture Collection (Manassas, VA). The HLA-DR-specific
mAb L243 (17) was purified from exhausted culture medium
of the hybridoma. Fluorescein-conjugated goat anti-mouse IgG was
purchased from Jackson ImmunoResearch Laboratories (West Grove, PA).
HRP-conjugated avidin was obtained from Vector Laboratories
(Burlingame, CA).
Computer analysis, modeling, and design of humanized AF2 versions
Three-dimensional models of the V domains of the AF2 Ab using the amino acid sequence determined (see below) were built with the help of the ABMOD and ENCAD programs (18, 19). Sequence analysis, homology searches, and structural analysis of three-dimensional models were conducted with the program Delta (20).
For humanization, the approach of Queen et al. (21) was
followed. First, sequences of human V regions most identical with AF2
were identified. Among the most similar VH
sequences is Eu of Kabats subgroup I (22), with 58%
identity in the framework region. This sequence was used to provide the
VH framework of the humanized Ab. The
VL from Eu was used to provide the humanized Ab
VL framework. This VL
sequence belongs to the Kabat subgroup I of
-chains
(22) and has 65% identity with AF2 in the respective
framework region.
Based on their location relative to the CDRs in the three-dimensional
model, the framework amino acids that could influence CDR conformation,
and thus Ab-binding affinity and/or activity were identified. Amino
acids from the murine AF2 sequence were used instead of the human Eu
amino acids in those positions. Such substitutions were conducted at
positions 48 and 62 of the VL domain, and at
positions 28, 48, 66, 67, 69, 71, and 73 of the
VH domain (the numbering scheme of Kabat et al.
(22) is used unless otherwise noted). That these sets of
framework amino acids contact the CDRs was confirmed using the
structure of the chimeric AF2 Fab solved by x-ray crystallography
(23). Furthermore, as in the procedure described earlier
(21), a number of amino acids in the Eu framework that
were unusual at their positions for their respective human subgroups
were also identified. Those amino acids were changed to correspond to
consensus human sequences of human subgroups I for
VH and VL. Such
substitutions were made at positions 62 of VL, and 27, 30, 89,
91, 94, 103, 104, 105, and 107 of VH. The amino
acid sequences of this initially designed version, denoted EuAF2, are
shown compared with the AF2 sequences in Fig. 1
.
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The cloning of the VL and
VH domains of the AF2 Ab and their subcloning
into mammalian expression vectors pV
and pV
1.d were as described
(26). Genes encoding the humanized versions of the AF2
VL and VH were synthesized
from a series of overlapping oligonucleotides (26).
Site-directed mutagenesis of the murine and humanized AF2 genes was
performed by the overlap-extension PCR method (27). The
presence of the desired nucleotide substitution(s) was confirmed by DNA
sequencing.
Ab expression
H and L chain expression vectors were transiently cotransfected into COS-7 cells using Lipofectamine (Life Technologies, Rockville, MD). After 72 h of incubation, the supernatants were collected and quantitated for Ab by ELISA. In most instances, Ab was purified from transfectant supernatants using protein A-Sepharose chromatography (Bioprocessing, Princeton, NJ). All purified Ab preparations were examined by PAGE under both reducing and nonreducing conditions to verify the presence of only intact IgG. All experiments were conducted with intact whole Ab preparations.
IFN-
neutralization assay
The IFN-
-dependent induction of HLA-DR expression was
conducted essentially as described (7), using the human
melanoma cell line Hs294T (28). Cells were examined for
the level of HLA-DR expression by indirect immunofluorescence. The
level of inhibition of induction by the various Abs was calculated
using the formula:
![]() |
and stained for
HLA-DR expression, MCFAb is the MCF of Hs294T
cells incubated with IFN-
and 250 pM of the indicated Ab, and
MCFmin is the MCF of Hs294T cells incubated in
the absence of IFN-
. Competition ELISA
The competition ELISA using biotinylated AF2 (bAF2) to measure relative affinity differences was conducted as described (7).
| Results |
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with affinity comparable with that of AF2
The murine Ab AF2 was humanized using the VH
and VL frameworks of the human Eu Ab by the
strategy outlined in Materials and Methods. The resulting
humanized version of AF2, designated EuAF2, was expressed and purified
from transfectant supernatant, and compared with the original murine
AF2 Ab for binding to human IFN-
. The comparison was conducted using
a competition ELISA; both AF2 and EuAF2 were assayed for their ability
to competitively inhibit the binding of bAF2 to IFN-
-coated ELISA
plates. Fig. 2
A demonstrates
that EuAF2 competes with bAF2 slightly less efficiently than does AF2.
The IC50 in this particular binding assay, which
is representative of several, is 9.2 nM for AF2 and 20.8 nM for EuAF2.
Thus, the humanized Ab exhibits a relative affinity
2-fold lower
than the murine Ab.
|
-neutralizing activity
To further characterize EuAF2, its capacity to neutralize IFN-
was compared with that of AF2. Induction of MHC class II expression on
responsive cells is a sensitive assay for IFN-
activity
(29). The human melanoma cell line Hs294T expresses no
constitutive class II molecules; however, exposure to IFN-
for
48 h results in a level of class II molecule expression easily
detectable by indirect immunofluorescence and flow cytometry
(7). However, comparing the ability of AF2 and EuAF2 to
inhibit such IFN-
-mediated MHC class II induction revealed a
difference that was much greater than 2-fold observed for direct
binding. Fig. 2
B shows that AF2 is
20-fold more efficient
at neutralizing IFN-
than is EuAF2, with an
IC50 of 0.116 nM for AF2 and 2.43 nM for EuAF2 in
this biological activity assay.
The variation in relative activity between AF2 and EuAF2 in competitive
binding (
2-fold difference) and biological activity (>20-fold
difference) indicated that the humanization process significantly
altered the capacity of EuAF2 to neutralize IFN-
activity, yet
exerted a much smaller effect on IFN-
binding. A chimeric version of
AF2 (murine V regions, human C regions) behaves in a manner
indistinguishable from the murine Ab in these assays (data not shown),
indicating that the deficiency was based in the humanized V regions. To
establish whether the humanized form of either the H or L chain was
responsible for the loss of neutralizing activity, we constructed Abs
that paired the humanized H or L chains with the appropriate murine
chain. Such mix and match experiments revealed that the humanized H
chain was responsible for the decrease in functional activity, as an Ab
composed of the AF2 H chain paired with either the murine (AF2) or
humanized (EuAF2) L chain retained IFN-
-neutralizing activity, while
pairing the AF2 L chain with the humanized H chain resulted in an Ab
with greatly diminished activity (data not shown).
Identification of AF2 VH residues essential for IFN-
neutralization
The H chain V region of EuAF2 contains 21-aa differences from AF2
exclusive of the CDR residues (Fig. 1
). To establish whether the
decrease in IFN-
-neutralizing ability could be localized to
individual residues on the humanized H chain, we constructed a series
of mutants that introduced these 21 residues from the humanized EuAF2 H
chain individually or in groups into the murine AF2 H chain (Fig. 3
). These mutant H chains were
transfected along with the humanized EuAF2 L chain, and transfectant
supernatants were collected after 72 h. The concentration of Ab
was determined by ELISA for each variant, and each Ab was examined for
the ability to neutralize IFN-
, as expressed by the percentage of
inhibition of MHC class II induction on Hs294T cells. Fig. 3
lists the
mutants and depicts their relative efficiency in neutralizing IFN-
.
The majority of the mutants exhibited IFN-
-neutralizing activity
similar to that of AF2. However, two mutants exhibited decreased
IFN-
-neutralizing activity: a 4-aa change in framework region
1 (Asp-10
Glu, Leu-11
Val, Val-12
Lys, and Met-13
Lys)
that exhibited a substantial decrease, and a change in framework
region 2 (Lys-38
Arg) that demonstrated a more subtle decrease (Fig. 3
). The slight decrease in neutralizing capacity observed in the
Ser-75
Thr, Ser-76
Asp mutant was not reproducible upon repeated
analysis.
|
neutralization, each was introduced individually into the AF2 H chain,
and the Abs were produced and assayed for IFN-
-neutralizing
activity. This experiment revealed one mutant (Leu-11
Val) that lost
an amount of IFN-
-neutralizing activity roughly equivalent to that
lost by the original 4-aa mutant; constructs containing the other three
changes individually exhibited a level of IFN-
neutralization close
to that of AF2 (Fig. 3
-neutralizing activity of this Ab.
Modification of EuAF2 VH to restore
IFN-
-neutralizing activity
The identification of the above two residues (11 and 38) as being
capable of reducing IFN-
-neutralizing activity of the murine AF2
VH region led us to determine whether introducing
the original murine amino acids at one or both of these positions would
restore IFN-
-neutralizing capacity to EuAF2. Thus, we introduced
these 2 aa individually or together into the EuAF2
VH and transfected each along with the EuAF2 L
chain into COS-7 cells, then determined the activity of the resulting
Abs in the IFN-
neutralization assay. Fig. 4
displays the neutralization curves for
these versions and reveals that replacing residue 11 (Val) in the EuAF2
VH with a Leu significantly increased
IFN-
-neutralizing capacity, while replacing residue 38 (Arg) with a
lysine had a smaller, but easily detectable effect. However, making
both changes (Val-11
Leu, Arg-38
Lys) resulted in a humanized Ab
version that most closely approximated the IFN-
-neutralizing ability
of AF2 (Fig. 4
). This fully humanized Ab, designated HuZAF, differs
from the initial EuAF2 version by only two residues (11 and 38) in the
framework of the H chain V region.
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neutralization assay. HuZAF exhibits both IFN-
-binding
and IFN-
-neutralizing capacity within 2- to 3-fold of that observed
with AF2 (Fig. 5
-neutralizing capacity improved by
10-fold.
|
Examination of the previously determined three-dimensional
structure of the Fab of AF2 (23) indicates that Lys-38 is
proximal to amino acids in the CDR portion of the Ab; thus, an effect
an Ab activity can be reconciled, as this is the primary location of Ag
binding (Fig. 6
A). The
location of Leu-11, in contrast, is distal to the Ag binding surface,
making it unlikely that this residue affects the structure of the Ag
binding surface. However, examination of this Fab structure indicates
that Leu-11 is involved in the V-C interface, and it interacts closely
with amino acids Phe-148 and Pro-149 of the CH1
domain (Fig. 6
B). To test the role of this interaction in
neutralization capacity, the Phe-148 in HuZAF was replaced by Leu or
Ala. Thus, these variants differ from HuZAF only by a single residue in
the C region. As shown in Fig. 7
, replacement of Phe-148 by either Leu or Ala substantially decreased the
ability of the Ab to neutralize IFN-
, and the magnitude of this loss
was comparable with that observed for the change at
VH position 11 (Fig. 2
). Therefore, altering a
single residue in CH1 diminishes the ability of
HuZAF to neutralize IFN-
activity 5- to 10-fold, and indicates that
this simple modification of the interface between V and C domains has
ramifications for AF2 functional activity.
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| Discussion |
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mAb AF2, we
noticed that while the IFN-
-binding activity was minimally altered,
the biological activity of the initial humanized version (EuAF2) was
inordinately affected. Although EuAF2 exhibited relative Ag-binding
activity within 2-fold of that observed with the original murine Ab,
the capacity to neutralize IFN-
was diminished by greater than
20-fold. As maintaining the potent IFN-
-neutralizing activity of AF2
in any humanized version was essential, we investigated the basis of
this discrepancy.
Our mutational analysis identified two VH
framework residues in AF2 that had been changed to human residues in
the initial humanization that were essential for full
IFN-
-neutralizing activity: a Leu at position 11 and a Lys at
position 38. Reintroducing these two residues into the initial version
of the humanized Ab recovered virtually all of the lost activity. The
resulting humanized Ab, designated HuZAF, exhibits both IFN-
binding
and neutralization within 2- to 3-fold of the original murine AF2
Ab.
The participation of the VH framework residue 38
(Lys) in IFN-
neutralization is not surprising, even though the
EuAF2 Ab has a very similar amino acid (Arg) at this position. Amino
acid 38 is separated from the last residue of CDR1 by only 2 aa, and
thus may play a structural role in the positioning of this CDR.
Moreover, examination of the crystal structure of chimeric AF2
(23) reveals that the C
atom of Lys-38 (the first atom
changed in a Lys to Arg mutation) is only 5
away from the side
chain of a VH CDR2 residue (Phe-63), possibly
influencing the configuration of this CDR also (Fig. 6
A). In
addition, several different Abs humanized by various groups retain the
murine residue at this position (30, 31, 32), implying that
involvement of VH residue 38 in Ab activity is a
characteristic not unique to AF2.
However, the importance of the Leu at VH
framework position 11 to IFN-
-neutralizing capacity was initially
much more difficult to understand. This residue is located far away
from the CDRs both in primary structure and three-dimensional space
(Figs. 1
and 6
A). Position 11 is separated by 19 aa from the
beginning of CDR1, and the closest CDR residue in three-dimensional
space to the C
of Leu-11 (the first atom changed in a Leu to Val
mutation) is also the Phe-63 in VH CDR2, although
in this case the distance is more than 20
(23).
Thus, it is unlikely that Leu11 has a direct
structural effect on the Ag binding site of the Ab.
However, VH framework residue 11 has been
identified as a component of a ball-and-socket joint that exists
between Ab V and C domains (16). Residues 11, 110, and 112
of VH form the socket, while residues 148 and 149
of CH1 (numbered 149 and 150 in Ref.
16) form the corresponding ball of the joint (Fig. 6
B). This structure has been hypothesized to modulate
flexibility between the V and C domains of the Fab (16).
It has been proposed that the orientation of this joint dictates the
elbow angle, which is the angle formed by the approximate 2-fold axis
of symmetry between the
VH/VL domains with the
equivalent axis formed by
CH1/CL, and suggested that
this structure has functional importance (16). Variations
in this elbow angle define the second major form of Ab flexibility (the
first being modulated by the hinge region connecting
CH1 with CH2)
(33). Therefore, it seemed possible that the participation
of the Leu-11 in IFN-
neutralization was based upon the role it
serves as a component of the ball-and-socket joint between the V and C
domains. This hypothesis was tested by altering residue 148 of
CH1, a residue that is part of the ball of the
joint. Replacement of the Phe-148 with Ala or Leu significantly
diminishes the ability of the Ab to neutralize IFN-
. Phe-148 was
chosen to test rather than Pro-149 (the residue that comprises the
other half of the ball of the joint), as changing the latter could
alter the backbone structure. The fact that a single mutation in
CH1 can so dramatically affect the biologic
activity of this Ab with little consequence to Ag binding reveals that
the ball-and-socket joint can have functional significance, and
suggests that the appropriate elbow angle and/or V/C domain flexibility
is essential for the IFN-
neutralization activity of the AF2 Ab and
its humanized versions. It is interesting that 97% (152 of 157) of
sequences available for members of the murine VH
subgroup IIB have a Leu at position 11, making this a highly conserved
residue in this subgroup (22).
The lack of strict correlation between binding affinity and Ab biological activity is an observation not confined to humanized versions of AF2. A humanized Fab variant of the murine anti-p185HER2 Ab 4D5 binds this Ag with affinity comparable with that observed with the murine Fab, but exhibits none of the antiproliferative effect of the latter (34). In addition, humanized versions of an anti-RSV single chain Ab fragment exhibit binding indistinguishable from the murine version; however, viral neutralization is severely impaired (35). Although neither of these cases appears to involve the ball-and-socket joint, it is clear that binding affinity alone is not a sufficient indication of a successful humanization, and the relevant Ab-mediated biological activity must be monitored.
It is unclear why IFN-
neutralization is more susceptible to changes
in the ball-and-socket joint than is direct Ag binding. It is possible
that efficient IFN neutralization requires subtle molecular
interactions, which are trivial to Ag binding, but not permitted by an
altered ball-and-socket joint. AF2 inhibits the binding of IFN-
to
its receptor (7), and interrupting this interaction is
presumably the mechanism of IFN-
neutralization. Our results
indicate that the Ab requires an intact ball-and-socket joint to
exhibit optimal IFN-
-neutralizing activity, and suggests that
intramolecular flexibility of the Ab between V and C domains, and thus
the elbow angle, is important. That IFN-
-neutralizing activity
relies upon flexibility between the V and C region domains may relate
to the fact that the determinant on IFN-
bound by AF2 is proximal
to, but distinct from the surface of the molecule that interacts with
the receptor (7). Possibly a flexible V/C interface
permits the CDRs of the Ab to bind this determinant while allowing the
remainder of the Ab molecule to interfere with IFN-
binding to the
receptor. This implies that simple binding to the epitope on IFN-
is
necessary, but not sufficient for IFN-
neutralization, and suggests
that the Ab must also possess the flexibility to block IFN-
interaction with the receptor. A greater than 10-fold reduction in the
ability of the Fab of HuZAF to neutralize IFN-
(unpublished data) is
consistent with this hypothesis. Therefore, alterations in the
ball-and-socket joint might be expected to preferentially affect
IFN-
neutralization, while exhibiting little influence on binding.
There is precedent for Ag-induced alteration in the elbow angle. A
significant decrease in the elbow angle has been observed between the
free Fab of NC6.8, an anti-guanidinium sweetener Ab, and the Fab-Ag
complex (36), demonstrating Ag binding-dependent changes
in the relative orientation of the V and C domains.
The successful humanization of AF2 provides a potent IFN-
antagonist
that may have therapeutic value. HuZAF exhibits an
IC90 of <1 nM in the IFN-
-mediated induction
of MHC class II expression assay. The concentration of natural IFN-
in this assay is 0.25 nM; thus, HuZAF can essentially abolish IFN-
activity at a molar ratio of less than 4 HuZAF to 1 IFN-
. This
potent IFN-
-neutralizing activity coupled with the long circulating
t1/2 of a humanized Ig makes HuZAF a
potentially ideal therapeutic agent for treatment of conditions in
which IFN-
may contribute to the pathology. The recent appreciation
of the role that lymphocytes of the Th1 lineage play in a variety of
autoimmune conditions, coupled with the integral involvement of IFN-
in the generation and maintenance of this lineage, suggests HuZAF may
possess a unique therapeutic potential. This potential will need to be
tested in a clinical setting.
| Acknowledgments |
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| Footnotes |
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2 Abbreviations used in this paper: CDR, complementarity-determining region; bAF2, biotinylated AF2; MCF, mean channel fluorescence. ![]()
Received for publication August 15, 2000. Accepted for publication October 31, 2000.
| References |
|---|
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|
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and its receptor. Annu. Rev. Immunol. 11:571.[Medline]
receptor: a paradigm for cytokine receptor signaling. Annu. Rev. Immunol. 15:563.[Medline]
in immune regulation. I. IFN-
inhibits the proliferation of Th2 but not Th1 murine helper T lymphocyte clones. J. Immunol. 140:4245.[Abstract]
and IL-4 on the in vitro development of human Th1 and Th2 clones. J. Immunol. 148:2142.[Abstract]
from various primates with greater specificity than can the human IFN
receptor complex. Mol. Immunol. 36:1107.[Medline]
-interferon antibody. J. Mol. Recognit. 12:19.[Medline]
1 modulates the expression of class II histocompatibility antigens on human cells. J. Immunol. 140:4217.[Abstract]
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