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-Chain Gene Rearrangement Correlates with Its Association with the Underphosphorylated Form of Retinoblastoma1
Department of Life Science, Tokyo Institute of Technology, Yokohama, Japan
| Abstract |
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-chain gene
rearrangement, which was investigated in mice deficient for these
sites. Previously, we found that Pax-5 can bind to the KI and KII
sites; however, the function of Pax-5 in
-chain gene rearrangement
has not been investigated. Here, we have used an in vitro culture
system in which differentiation from pre-B cells to immature B cells is
induced by removing IL-7. We showed that, after the induction of
differentiation, Pax-5 dissociated from the KI and KII revealed by EMSA
analyses, and this dissociation occurred specifically at the KI and KII
sites, but not at the Pax-5 binding site, in the CD19 promoter because
of a lower binding affinity of Pax-5 for the KI and KII sites. During
differentiation induced by removing IL-7, the underphosphorylated form
of retinoblastoma preferentially associated with Pax-5, which caused
dissociation of Pax-5 from KI and KII sites. These results suggest that
the dissociation of Pax-5 from the KI and KII sites is important in the
induction of
-chain gene rearrangement. | Introduction |
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Pax-5 expression is detected in many stages of B cell development, beginning with the very early commitment stage (8). During the early stages, Pax-5 exhibits a heterozygous monoallelic expression pattern, transcribing either of the two alleles in a stochastic, reversible manner that is independent of the parental origin. Interestingly, this monoallelic expression switches to biallelic expression at the immature B cell stage (9). In Pax-5 mutant mice, B cell development was arrested at the pre-BI stage, characterized by the large cell size and the surface expression of CD43 (8). CD19 was completely lost on the Pax-5 deficient cells, suggesting that Pax-5 is crucial for the expression of CD19. More recently, CD19 was shown to be a direct target for Pax-5 (10, 11). In Pax-5 mutant pre-BI cells, the first step of IgH gene rearrangement from germline to DHJH was normal. However, the frequency of rearrangement from DHJH to VHDHJH was reduced to 1/50 (8), suggesting that Pax-5 is involved in the machinery of Ig gene rearrangement during the differentiation from pre-BI cells to immature B cells.
In the early differentiation of B lineage, the pre-BI cells are large
cell-cycling cells undergoing spontaneous DHJH rearrangement
(12). Successful completion of
VH-DHJH rearrangement is one of the checkpoints
for the positive selection for the differentiation of B lineage cells
into large pre-B cells, which transiently bear a complex of µ-chain
coupled with the surrogate light chain (VpreB and
5) on the surface
(13). This complex, known as pre-B cell receptor (pre-BCR)
(14, 15, 16, 17, 18), was reported to trigger proliferation of pre-B
cells (19), promote allelic exclusion at the IgH locus
(20, 21), and induce differentiation to small pre-B cells,
which then undergo Ig
-chain gene rearrangement (22, 23). Pax-5 might regulate H and
-chain gene rearrangement by
a similar mechanism in which signals downstream of the pre-BCR may be
involved.
During
chain gene rearrangement, two sterile transcripts of 1.1 kb
and 0.8 kb are detected before the V
J
joining (24, 25). The 0.8-kb RNA transcript initiates immediately upstream of
the mouse J
1 segment within a region that contains two binding sites
(KI and KII) for Pax-5. Immediately adjacent and downstream of the
KI/KII site, there is the recombination signal sequence where
recombination-activating gene (RAG)1 and RAG2 bind (26).
Importantly, specific mutations of the KI and KII sites did not affect
germline
transcription in mice; however, they reduced the frequency
of V
-J
rearrangement to 1/10 of the normal level
(27). These data clearly demonstrate that the KI and KII
sites are cis-acting recombination enhancing elements;
however, the molecular mechanism of both sites in
-chain gene
rearrangement has not been investigated. The recognition of these sites
by Pax-5 implicates its function in the control of
-chain gene
rearrangement (28).
Recently, we have established IL-7-dependent pre-BCR-positive pre-B
cell lines. After removal of IL-7, the cells undergo differentiation
into immature B cells because of enhanced
-chain gene rearrangement
(29). This in vitro differentiation system is useful for
studies of the molecular mechanism of
-chain gene rearrangement
because the signals downstream of pre-BCR are active. In this study, a
role of Pax-5 binding to the KI and KII sites in
-chain gene
rearrangement has been investigated. The results demonstrate that the
association of Pax-5 with Rb induces the dissociation of Pax-5 from the
KI and KII sites during the induction of
-chain gene rearrangement,
suggesting that Pax-5 binding to and dissociating from the KI and KII
sites is important for
-chain gene rearrangement.
| Materials and Methods |
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PreBR1 and -BR2 cells derived from bone marrow cells of BALB/c mice were maintained in the presence of IL-7 (100 U/ml) as described previously (29). For in vitro differentiation, cells were washed three times to remove IL-7 and then cultured for 3 days at 5 x 105-1 x 106 cells/ml. The immature B cell line, WEHI231, was cultured in RPMI 1640 medium supplemented with 10% heat-inactivated FCS, 100 U/ml penicillin-streptomycin, and 50 µM 2-ME.
Preparation of nuclear extracts
Nuclear extracts were prepared according to the method of Scrheiber et al. (30). Cells (1 x 107) were harvested and washed twice in PBS, then the cell pellet was resuspended in 400 µl buffer A (10 mM HEPES (pH 7.5), 10 mM KCl, 0.1 mM EDTA, 0.1 mM EGTA, 1 mM PMSF, 2 µg/ml aprotinin, 1 mM DTT, 400 µM Na3VO4, 2.5 µg/ml leupeptin, and 5 µg/ml pepstatin). After incubation for 15 min on ice, 25 µl 10% Nonidet P-40 was added followed by vortexing. Cells were centrifuged in a microcentrifuge at 15,000 rpm for 1 min at 4°C. The supernatants were discarded, the cell pellets were resuspended in 100 µl buffer C (20 mM HEPES (pH 7.9), 25% glycerol, 0.4 M NaCl, 1 mM EDTA, 1 mM EGTA, 1 mM PMSF, 2 µg/ml aprotinin, 1 mM DTT, 400 µM Na3VO4, 2.5 µg/ml leupeptin, and 5 µg/ml pepstatin), and then shaken for 15 min at 4°C. After centrifugation in a microcentrifuge at 15,000 rpm for 5 min at 4°C, the supernatant was transferred to a fresh Eppendorf tube. The protein concentration of the nuclear extracts was determined by the Bradford assay.
EMSA
DNA was end-labeled with 32P by the Megalabel kit (Takara Shuzo, Kyoto, Japan). Labeled DNA (1.5 x 104 cpm) was incubated with 2 µg poly(dI-dC) (Pharmacia Biotech, Uppsala, Sweden) and nuclear extracts in a total volume of 20 µl. After incubation at room temperature for 15 min, samples were loaded onto a 5% polyacrylamide gel (29:1, acrylamide:bis-acrylamide) which was prerun for 1 h at room temperature at 150 V in 1x TAE (Tris-acetate EDTA). Samples were electrophoresed at 150 V for 2 h. Gels were dried and exposed to x-ray film (Kodak, Rochester, NY). Competition experiments were performed by mixing competitor DNA oligonucleotides with the binding reaction mixture before adding nuclear extracts. For supershift experiments, nuclear extracts were incubated with 2 µg of a goat anti-mouse N-terminal 19 of Pax-5 Ab (N-19), a goat anti-mouse C-terminal 20 of Pax-5 Ab (C-20; Santa Cruz Biotechnology, Santa Cruz, CA), and a control goat IgG (Southern Biotechnology Associates, Birmingham, AL) for 20 min at room temperature, respectively, before the labeled DNA fragments were added.
Oligonucleotide pairs upstream of J
1 (KI,
5'-CTCTGTTCCTCTTCAGTGAGGAGGGTTTTTGTA-3'; KII, 5'-
CCAAGCGCTTCCACGCATGCTTGGAGAGGGGGTTA-3'); CD19 promoter,
5'-CTAGACACACCCATGGTTGAGTACCCTCCAGT-3'; and Oct self-complementary
loop (octamer), 5'-GCCTCATTTGCATGGACTTAGCTTGTCCATGCAAATGAGG-3')
were used for EMSA. The octamer probe binds the ubiquitous Oct-1 factor
(31).
Western blotting analysis
Each 10 µg of nuclear protein was applied to wells of a SDS-10% polyacrylamide gel. Separated protein was blotted onto a nitrocellulose membrane (Schleicher & Schüll, Dassel, Germany), and the membranes were blocked in 5% nonfat milk in TTBS (10 mM Tris-HCl (pH 7.5), 150 mM NaCl, 0.1% Tween 20) at 4°C overnight. A goat anti-mouse N-terminal 19 of Pax-5 Ab, a goat anti-mouse C-terminal 20 of Pax-5 Ab, or a mouse anti-human Rb Ab (BD PharMingen, San Diego, CA) that cross-reacts to mouse Rb was incubated at a 1:500 dilution at room temperature for 1 h with shaking. Membranes were washed three times with TTBS and incubated at room temperature in a 1/1000 dilution of a HRP-conjugated rabbit anti-goat IgG Ab (Santa Cruz Biotechnology) or a HRP-conjugated goat anti-mouse IgG Ab (Bio-Rad, Hercules, CA) for 30 min. After washing membranes three times with TTBS, proteins were visualized with the chemiluminescence ECL kit according to the manufactures instruction (Amersham Pharmacia Biotech, Piscataway, NJ).
DNA content analysis of PreBR1 and PreBR2
For the DNA content analysis, 5 x 1045 x 105 cells were suspended in 200 µl ice-cold PBS, mixed with 2 ml ice-cold solution consisting of 70% ethanol and 30% PBS, and then incubated for 30 min on ice. Cells were harvested by centrifugation, suspended in 940 µl PBS containing 20 µl RNase A (5 mg/ml) and 40 µl propidium iodide (PI) (1 mg/ml), and were incubated for 30 min at 37°C. DNA content was analyzed by measuring a peak of FL-2.
Flow cytometry
A FITC-conjugated mAb 1D3 (anti-mouse CD19) and a
FITC-conjugated goat anti-mouse
-chain were purchased from BD
PharMingen and Southern Biotechnology Associates, respectively. Flow
cytometry using the FACSCalibur (BD Biosciences, Mountain View, CA) was
performed as described (29).
Immunoprecipitation
Precleared PreBR1 and PreBR2 nuclear extracts (100 µg) from cells cultured 0 or 3 days after removal of IL-7 were incubated with a mouse anti-human Rb (2 µg) in buffer C on a rotator at 4°C overnight. The immune complexes were captured by the addition of 20 µl protein G-Sepharose (Amersham Pharmacia Biotech). After washing five times with buffer C before loading onto a SDS-polyacrylamide gel, the immunoprecipitates were suspended in a 2x SDS sample buffer, eluted from the beads by boiling, and separated by SDS-PAGE. After electrophoresis, the gel was transferred to a nitrocellulose membrane and blocked in 5% nonfat milk in TTBS overnight. Pax-5 was detected by Western blotting as described above.
Preparation of GST fusion protein and GST pull-down assay
GST-Rb 379928(379928) was a gift from Dr. W. Kaelin (Dana Farber
Cancer Institute, Boston, MA). Escherichia coli BL21
cells transformed with pGEX 2T and pGEX 2T-Rb 379928(379928) were
inoculated overnight and then diluted. Diluted cultures were incubated
with 0.2 mM isopropyl-
-D-thiogalactopyranoside
for 4 h. The cells were centrifuged and suspended in 2.5 ml of a
lysis buffer (50 mM Tris-HCl (pH 8.0), 150 mM NaCl, 1 mM PMSF, 2
µg/ml aprotinin, 1 mM DTT, 400 µM
Na3VO4, 2.5 µg/ml
leupeptin, 5 µg/ml pepstatin, and 0.2 mg/ml lysozyme). After rotating
for 30 min at 4°C, 277 µl 10% Triton X-100 was added to the cell
lysate, and the cultures were incubated for further 20 min at 4°C.
The solutions were centrifuged at 3000 rpm for 30 min at 4°C, and the
remaining supernatants were incubated with 50 µl glutathione beads at
4°C overnight. Glutathione beads containing 3 µg GST or GST-fusion
protein were washed with the buffer C and incubated with precleared
nuclear proteins (100 µg) of PreBR1 and PreBR2 cells cultured in the
presence of IL-7 for 1 h at 4°C. Where indicated, 100 µg/ml
ethidium bromide (EtBr) was included in the reaction buffer.
After washing five times with buffer C, glutathione beads were
suspended in 2x SDS sample buffer, and protein was eluted from the
beads by boiling and separated by SDS-PAGE. Proteins were transferred
to a nitrocellulose membrane, and Pax-5 was detected by using a goat
anti-mouse N-terminal 19 of Pax-5 Ab. Abs were revealed by an ECL
Western blot detection system as described above.
| Results |
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PreBR1 and PreBR2 are IL-7-dependent preBCR+
pre-B cell lines; thus, they express IgH (µ-chain) together with the
surrogate L chain (VpreB and
5), Ig
-, and Ig
-chain. Three days
after removal of IL-7, pre-B cells differentiated into
IgM+ (µ and
) immature B cells, with smaller
sizes shown in Fig. 1
.
|
1
region, gel shift analyses were performed by using KI- and KII-specific
oligonucleotide probes (Fig. 2
|
|
PreBR1 and PreBR2 cell lines differentiate into immature B cells
within 3 days after removal of IL-7. Pax-5 binding to the KI and KII
sites was analyzed by EMSA during this differentiation process (Fig. 4
, A and B). The
ubiquitous Oct-1 transcription factor was used as a control for the
equivalence of the nuclear extracts. The signal of the shifted KI-Pax-5
and KII-Pax-5 bands decreased by 2 days after removal of IL-7, a
reduction that was even more pronounced by day 3, whereas the Oct-1
signal was unchanged (Fig. 4
C), indicating that the removal
of IL-7 did not result in nonspecific degradation of nuclear proteins.
Three days after removal of IL-7, pre-B cell differentiation was almost
complete. These results demonstrate that Pax-5 dissociates from the KI
and KII sites during differentiation from pre-B to immature B
cells.
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After induction of differentiation, the size of differentiated
PreBR cells becomes smaller, suggesting that cells enter the resting
stage of the cell cycle. To examine this possibility, flow cytometry
was performed. The DNA content of PreBR1 and PreBR2 cells was analyzed
by staining cells with propidium iodide before and 3 days after removal
of IL-7. In this experiment, only living cells were gated. PreBR1 and
PreBR2 growing on IL-7 contained 56 and 52% in
S/G2/M phases of the cell cycle, whereas only 33
and 38% of the cells were in S/G2/M phases 3
days after removal of IL-7 (Fig. 7
A). This result shows that
differentiated PreBR cells existed more in
G0/G1 phases, indicating
the resting stage of cell cycle, and it prompted us to examine the
possible Rb involvement in the differentiation process. Because the
underphosphorylated Rb can associate with Pax-5, we examined the
phosphorylation of Rb during the differentiation process (Fig. 7
B). The analysis revealed that Rb in the PreBR cells
growing in the presence of IL-7 was hyperphosphorylated but was
underphosphorylated 3 days after removal of IL-7.
|
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| Discussion |
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-chain gene
rearrangement. Pax-5 dissociates from KI and KII binding sites after
associating with Rb during differentiation from pre-B cells to immature
B cells in vitro. The severe disruption of rearrangement from DHJH to
VHDHJH in Pax-5-deficient mice indicates that Pax-5 may be involved in
Ig H chain gene rearrangement (8) as well and probably
regulates Ig gene rearrangement generally. In our previous studies, we
demonstrated that Pax-5 binds to KI and KII sites located upstream of
J
1 and close to the recombination signal sequences
(28). The importance of the KI and KII sites for
-chain
gene rearrangement was confirmed by experiments with mice deficient for
KI and KII sites. In the present study, we investigated the
dissociation of Pax-5 from KI and KII sites during induction of
-chain gene rearrangement in vitro. During the differentiation from
pre-BI cells to immature B cells, the following successive events
occur: 1) IL-7 receptor signals cease, 2) Rb becomes unphosphorylated,
3) Pax-5 becomes associated with unphosphorylated Rb, and 4) Pax-5 is
dissociated from KI and KII binding sites.
To address the question of why Pax-5 binding to KI and KII sites is
dissociated although Pax-5 binding to CD19 promoter remains, we
conclude that the binding affinity to KI and KII sites is much lower
than that of CD19 promoter or Rb-Pax-5 association; thus KI and KII
probes cannot take away Pax-5 from the Rb-Pax-5 complex in cell
lysates. Wallin et al. (32) examined Pax-5 binding
affinity to two activator elements, CD19 (10, 11) and
germline transcription of the
gene (33, 34, 35, 36), and two
repressor elements, the J chain gene promoter (37) and the
H chain 3'
enhancer (38, 39, 40, 41), by using competitive
gel-shift assays. The results demonstrated that the Pax-5 site with
positive regulatory activity had 20 times the affinity for the factor
as those sites with repressor activity. They concluded that the
difference in affinity indicated that the activator sites could
outcompete the repressor sites when the supply of Pax-5 was limiting.
Thus, we and Wallin et al. obtained similar results and conclusions.
Using in vivo footprinting analyses, Shaffer et al. (31)
also observed the dissociation of Pax-5 from its binding site in the 3'
-chain gene enhancer during the differentiation from pre-BI cells to
immature B cells. They suggested that signals from pre-BCR result in a
decrease in Pax-5 binding. The nature of this repression is quite
similar to that in KI and KII sites, where we also found binding and
releasing during differentiation.
In our experiments, Pax-5 dissociation from KI and KII sites is found
in pre-BCR-positive cells; however, the signals from IL-7 removal
dissociate Pax-5 from the KI and KII sites more efficiently than those
from the pre-BCR. After Pax-5 is removed, RAG1 and RAG2 can bind to the
recombination signal sequences because the KI site starts one base
upstream of the recombination signal sequence nonamer, and RAG proteins
possibly cover or penetrate the KI site (42), suggesting
that Pax-5 may interfere with RAG binding. In the IgH 3'
enhancer,
a similar function was revealed in that Pax-5 binding blocks the
positive regulator for IgH
-chain transcription
(38, 39, 40, 41). We will further investigate the correlation
between Pax-5 binding and RAG binding by in vivo footprinting. In
contrast, to investigate the function of Pax-5 at KI and KII sites
during differentiation, the constitutive expression of Pax-5 was
performed by retroviral transfection of the Pax-5 gene into pre-B
cells. Our results demonstrated that a high expression of Pax-5 brought
cell death (data not shown), illustrating the difficulty of such a
experiment in vitro, because the Pax-5 amount might be very strictly
regulated in B lineage cells (9).
Itoh et al. (43) reported that, by using IL-7-stimulated B
precursor cells, Rb was phosphorylated by anti-cyclin-dependent kinase
(CDK)4 immunoprecipitants in vitro, indicating that CDK4,
assembled with cyclin D3, in the regulation of
G1/S transition was activated under this
condition. Rb is known to be regulated by the CDK4-cyclin D complex
(44); thus, this machinery functions in the pre-B cell
line. In vivo, this system is functioned in the pre-BI cell stage;
therefore, during transition from the pre-BI to immature B cell stage,
Pax-5 is initially released for the activation of the
locus, and
then signals from pre-BCR may induce the rearrangement. Recently, lipid
raft formation has been suggested to be important for signaling from
the pre-BCR (45) because it is autonomously involved in
the lipid raft. Thus, another possibility is that IL-7 removal induces
the activation of lipid rafts, and signals from pre-BCR are transduced
from the raft structure.
Besides the Rb association, there are several possibilities for
dissociation of Pax-5 from the KI and KII sites. First, in terms of
post-translational modification, although we do not deny this
possibility, it seems unlikely because no reports have appeared for the
modification of Pax-5. Second, protein-protein interaction except for
Pax-5-Rb possibly occurs because Pax-5 potentially associates with
other proteins. This second case is likely. Pax-5 may associate with
other proteins whose expression is regulated in a
differentiation-dependent manner during
-chain rearrangement; thus,
Pax-5 loses the binding affinity to the KI and KII sites.
Finally, the fact that Rb and Pax-5 interact together in B lineage cells suggests that Rb has a common regulation in T cells for TCR gene rearrangement, because IL-7 is a common growth factor for both B and T cell progenitors.
| Acknowledgments |
|---|
| Footnotes |
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2 Address correspondence and reprint requests to Dr. Akira Kudo, Department of Life Science, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama, 226-8501 Japan. E-mail address: akudo{at}bio.titech.ac.jp ![]()
3 Abbreviations used in this paper: Rb, retinoblastoma; pre-BCR, pre-B cell receptor; RAG, recombination-activating gene; CDK, cyclin-dependent kinase. ![]()
Received for publication January 2, 2001. Accepted for publication March 23, 2001.
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