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The Journal of Immunology, 2000, 165: 5084-5096.
Copyright © 2000 by The American Association of Immunologists

TNFR-Associated Factor Family Protein Expression in Normal Tissues and Lymphoid Malignancies

Juan M. Zapata*, Maryla Krajewska*, Stanislaw Krajewski*, Shinichi Kitada*, Kate Welsh*, Anne Monks{ddagger}, Natalie McCloskey§, John Gordon§, Thomas J. Kipps, Randy D. Gascoyne{dagger}, Ahmed Shabaik|| and John C. Reed2,*

* The Burnham Institute, Program on Apoptosis and Cell Death Regulation, La Jolla, California 92037; {dagger} British Columbia Cancer Agency, Department of Pathology, Vancouver, British Columbia, Canada; {ddagger} Science Applications International Corp., National Cancer Institute-Frederick Cancer Research and Deveopment Center, Frederick, MD 21702; § Medical Research Council Centre for Immune Regulation, University of Birmingham, Birmingham, United Kingdom; and Departments of Medicine, Hematology, and Oncology and || Pathology, University of California, San Diego, CA 92093


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
TNFR-associated factors (TRAFs) constitute a family of adapter proteins that associate with particular TNF family receptors. Humans and mice contain six TRAF genes, but little is known about their in vivo expression at the single cell level. The in vivo locations of TRAF1, TRAF2, TRAF5, and TRAF6 were determined in human and mouse tissues by immunohistochemistry. Striking diversity was observed in the patterns of immunostaining obtained for each TRAF family protein, suggesting their expression is independently regulated in a cell type-specific manner. Dynamic regulation of TRAFs was observed in cultured PBLs, where anti-CD3 Abs, mitogenic lectins, and ILs induced marked increases in the steady-state levels of TRAF1, TRAF2, TRAF5, and TRAF6. TRAF1 was also highly inducible by CD40 ligand in cultured germinal center B cells, whereas TRAF2, TRAF3, TRAF5, and TRAF6 were relatively unchanged. Analysis of 83 established human tumor cell lines by semiquantitative immunoblotting methods revealed tendencies of certain cancer types to express particular TRAFs. For example, expression of TRAF1 was highly restricted, with B cell lymphomas consistently expressing this TRAF family member. Consistent with results from tumor cell lines, immunohistochemical analysis of 232 non-Hodgkin lymphomas revealed TRAF1 overexpression in 112 (48%) cases. TRAF1 protein levels were also elevated in circulating B cell chronic lymphocytic leukemia specimens (n = 49) compared with normal peripheral blood B cells (p = 0.01), as determined by immunoblotting. These findings contribute to an improved understanding of the cell-specific roles of TRAFs in normal tissues and provide evidence of altered TRAF1 expression in lymphoid malignancies.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
To date, six members of the TNFR-associated factor (TRAF)3 family of signal-transducing adapter proteins have been identified in humans and mice (1). Several TRAF family proteins interact directly with the cytosolic domains of various TNF family cytokine receptors, including CD27, CD30, CD40, CD120b (TNFR2), lymphotoxin-ß receptor (LTßR) and the herpes virus entry mediator. Through interactions with other adapter proteins, TRAFs also indirectly associate with additional cytokine receptor complexes, including TNFR1 (CD120a), DR3, and IL-1R (CD121). The structure within these proteins that permits their association with TNF family receptors is the TRAF domain, a novel protein fold of ~180 aa (1). The x-ray crystallographic structure of the TRAF domain of TRAF2 reveals a trimeric assembly, with each TRAF domain monomer containing a surface crevice responsible for binding peptidyl motifs found in the cytosolic domains of the TNF family receptors to which TRAF2 is known to bind (2, 3, 4). Similarities and differences in the peptidyl specificities of individual TRAFs account for their selective associations with particular TNFR family members, yielding diversity, redundancy, and competition among TRAFs with respect to ligand-inducible recruitment to various TNFR family receptor complexes (5, 6, 7, 8, 9, 10).

While capable of associating with multiple cytokine receptor complexes, several TRAFs can also bind to a variety of protein kinases, including the NF-{kappa}B-inducing kinases NK{kappa}B-inducing kinase, receptor interacting protein 1, and caspase-recruiting domain (containing IL-1ß converting enzyme-associated kinase), as well as the c-Jun N-terminal kinase (JNK) pathway activators mitogen-activated protein (MAP) kinase kinase kinase-1, apoptosis signal-regulating kinase-1, and the germinal center kinase-related kinase (GCKRK; Refs. 11, 12, 13, 14, 15, 16, 17). Thus, TRAFs physically and functionally connect TNF family cytokine receptors to intracellular protein kinases, thereby linking these receptors to downstream signaling pathways.

The in vivo roles of TRAFs are beginning to be elucidated through the generation of transgenic mice that overexpress these proteins or dominant-negative mutants of them, as well as through targeted gene ablation (knockouts) in mice (18, 19, 20, 21, 22, 23, 24). However, to date, little is known about the normal patterns of TRAF expression in lymphoid, hemopoietic, and other types of tissues in vivo. Moreover, little effort has been made thus far to examine how the expression of TRAFs might change in association with malignant transformation, an issue of potential importance for better understanding host immune responses to tumors.

Previously, we generated specific Abs to TRAF3 and TRAF4, defining their normal patterns of expression in human tissues in vivo (25, 26). In this report, we identified Abs that selectively recognize TRAF1, TRAF2, TRAF5, or TRAF6, and used these reagents for assessing the in vivo locations of expression of these TRAF family proteins in normal human and murine tissues. We also characterized the expression of TRAF1, TRAF2, TRAF5, and TRAF6 in 83 human tumor cell lines, and found evidence of elevations of TRAF1 expression in non-Hodgkin lymphomas (NHLs) and B cell chronic lymphocytic leukemia (B-CLL). The findings lay the foundation for a more complete understanding of the diversity of cellular responses to the TNF/Toll family receptors, which rely on TRAF family proteins for their signal transduction mechanisms.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Ab and immunogen preparation

Polyclonal antisera were generated in rabbits using synthetic peptides or recombinant protein immunogens. Unless otherwise specified, peptides were synthesized with an N-terminal cysteine appended to permit conjugation to maleimide-activated carrier proteins keyhole limpet hemocyonin KLH and OVA (Pierce, Rockford, IL) as described previously (27) and with a C-terminal amide (NH2) rather than free carboxylic acid. Among the peptides used as immunogens were: MASSSGSSPRPAPDENEFPFGC, corresponding to residues 1–22 of human TRAF1; CRADNLHPVSPGSPLTQEK, representing aa 51–69 of murine TRAF1; CVTPPGSLELLQPGFSKTLLGTKLEAK, corresponding to aa 6–31 of human TRAF2; CSFLEAQASPGTLNQVGPELLQR, representing residues 250–271 of murine TRAF2; CMAHSEEQAAVPCAFIRQNSG, corresponding to aa 1–20 of murine TRAF5; and CDAKPELLAFQRPTIPRNPK, representing residues 451–469 of human and murine TRAF6. Antipeptide antiserum specific for TRAF3 and TRAF4 have been described (25, 26).

An additional anti-TRAF3 serum was produced using recombinant human TRAF3 (residues 341–568)-His6 protein. Recombinant TRAF3 341–568(341–568) was produced as a fusion protein with a C-terminal his6 tag. This protein was expressed in BL21 (DE3) cells by induction with 1 mM isopropyl ß-D-thiogalactoside. Following cell growth and lysis, the clarified cell lysate was applied to a nickel-nitrilotriacetic acid column (Qiagen, Valencia, CA) and eluted with an imidazole gradient. The pooled TRAF3 fractions were dialyzed against 50 mM Tris at pH 8.8 and applied to a 10/10 fast protein liquid chromatography mono Q column (Pharmacia, Piscataway, NJ) and eluted with an NaCl gradient.

New Zealand White female rabbits were injected s.c. with a mixture of 0.25 ml KLH peptide (1 mg/ml), 0.25 ml OVA peptide (1 mg/ml), or recombinant protein (0.1–0.25 µg protein/immunization) and 0.5 ml Freund’s complete adjuvant (dose divided over 10 injection sites) and then boosted three times at weekly intervals followed by another 3–20 boostings at monthly intervals with 0.25 mg each of KLH peptide, OVA peptide, or recombinant protein immunogens in Freund’s incomplete adjuvant, before collecting blood and obtaining immune serum. Commercially available Abs for TRAF1 (H-132), TRAF2 (H-20), TRAF5 (H-257), and TRAF6 (H-274) (Santa Cruz Biotechnology, Santa Cruz, CA) were purchased for comparison and used for some experiments as indicated below.

Tissues and patient specimens

Normal tissues for immunohistochemical analysis were derived either from human biopsy and autopsy material (n >= 3) or from adult mice of various strains. Only tissues that appeared to be histologically free of disease were used. These tissues were fixed in either neutral buffered formalin, zinc-buffered formalin (Z-fix; Anatech, Battle Creek, MI), B5, or Bouin’s solution (Sigma, St. Louis, MO), and embedded in paraffin. For part of the analysis, we constructed a tissue microarray containing 130 specimens, representing 0.6- or 1-mm (diameter) cylindrical cores acquired from paraffin blocks of normal human or mouse tissues, which were sectioned at 4- to 5-µm thickness (28). In addition to normal tissues, archival paraffin blocks were obtained for 236 NHL specimens, representing patients’ materials from several Eastern Cooperative Oncology Group (ECOG)-sponsored clinical trials attained through protocol E6491. Histological diagnosis was confirmed by review by an expert hemopathologist before immunostaining, according to the National Cancer Institute (NCI) Working Formulation (29), then converted to the updated Revised European-American Lymphoids neoplasm classification where possible (30).

Immunohistochemistry

Tissue sections were immunostained using a diaminobenzidine-based detection method as described in detail, using either an avidin-biotin complex reagent (Vector Laboratories, Burlingame, CA) or the Envision-Plus-HRP system (Dako, Carpinteria, CA) using an automated immunostainer (Dako Universal Staining System) (25, 26, 31, 32, 33). The dilutions of anti-TRAF antiserum typically used were 1:1500 (v/v) for anti-TRAF1, 1:3000 for TRAF2, 1:500 for anti-TRAF5, and 1:1000 for anti-TRAF6. Nuclei were counterstained with either hematoxylin or methyl green. For all normal tissues examined, the immunostaining procedure was performed in parallel using preimmune serum to verify the specificity of the results. Initial confirmations of Ab specificity also included experiments in which antiserum was preadsorbed with 5–10 µg/ml of either synthetic peptide immunogen or recombinant protein immunogen. The immunostaining results were arbitrarily scored according to intensity as 0, negative; 1+, weak; 2+, moderate; and 3+, strong. Results presented for each normal tissue were based on immunohistochemical analysis of multiple immunostained slides (n >= 3 for each tissue). For lymphomas, samples were additionally scored for percentage of immunopositive malignant cells, estimating the percentage in increments of 10% (0%, 10%, 20%, 30%, etc.) in overview and from a minimum of five representative high power fields. Comparisons were made with the germinal centers (GCs) from non-neoplastic lymph nodes (n = 9).

In vitro translations

TRAF1, TRAF2, TRAF3, TRAF4, TRAF5, and TRAF6 cDNAs subcloned into either pKSII-Bluescript (Stratagene, La Jolla, CA) or pcDNA-3 (Invitrogen, San Diego, CA) were transcribed and translated in vitro using 1 µg plasmid DNA, 25 µl TNT-reticulocyte lysates and either T3 or T7 RNA polymerase (Promega, Madison, WI) according to the manufacturer’s protocol in the presence of 35S-labeled L-methionine (~1 mCi/mmol; Amersham, Arlington Heights, IL).

Immunoblotting

Whole cell lysates were prepared from frozen human tissues obtained at autopsy, as described previously (25, 26, 33). For analysis of cultured cell lines, cells were lysed in RIPA solution (25 mM Tris, pH 7.2, 150 mM NaCl, 5 mM EDTA, 1% sodium deoxycholate, 0.1% SDS, and 1% Triton X-100) containing protease inhibitors (1 mM PMSF, 0.28 trypsin inhibitor units/ml aprotinin, 50 µg/ml leupeptin, 1 mM benzamidine, and 0.7 µg/ml pepstatin). Cell and tissue lysates were normalized for total protein content (50 µg/lane) and subjected to SDS-PAGE/immunoblot analysis using 1:500–1:2000 (v/v) dilutions of antisera and secondary HRP-conjugated goat anti-rabbit Ab (1:3000 v/v dilution; Bio-Rad, Richmond, CA), with detection accomplished using an enhanced chemiluminescence (ECL; Amersham-based) multiple Ag detection immunoblotting method that allows for multiple reprobings of blots without Ab stripping, as described previously (25, 34).

For immunoblot data qualifications, TRAF cDNAs were in vitro translated in the presence of [35S]methionine and analyzed by SDS-PAGE. The region of the gel containing each labeled TRAF protein was sliced, and the radioactivity contained in the band was quantified in a scintillation counter. The amount of TRAF protein contained in the in vitro translation mixture was determined according to the radioactivity incorporated into the protein and the number of methionines contained by each TRAF protein. Known amounts of each in vitro translated TRAF (5–50 µg) were used to create standard curves in immunoblot assays where the ECL-based Ag detection method was used. ECL data on x-ray films were quantified by scanning densitometry using the IS-1000 image analysis system (Alpha Innotech, San Leandro, CA), and the results from the in vitro translated protein standard-containing blot were used to normalize all data and thus estimate the nanograms of TRAF proteins per milligram of total cellular protein. Data from two independent standard-containing blots were within 20% agreement.

Cell isolation and culture

PBLs were isolated from the heparinized blood of normal volunteers and cultured in the presence of anti-CD3 (OKT3) Ab, PHA, and IL-2 as described in detail previously (35). Normal human GC B lymphocytes were isolated from tonsils by a method involving magnetic microbead-based immunodepletion with anti-IgD, anti-CD39, anti-CD3, and anti-CD14 (36). B cells were cultured in RPMI/10% FBS medium with or without 100 ng/ml of recombinant CD40 ligand (CD40L; Immunex, Seattle, WA). Peripheral blood B cells were isolated from peripheral blood using anti-CD19-conjugated magnetic beads (Dynal, Lake Success, New York) according to the manufacturer’s instructions. B-CLLs were isolated as described (37). All CLL specimens contained >=95% leukemic cells as determined by FACS analysis using anti-CD19 and anti-CD5 Abs. Of the 49 leukemic specimens, 21 represented previously untreated patients and 28 were derived from B-CLL patients with refractory disease.

Established tumor cell lines were cultured in either RPMI or DMEM with 5 or 10% FBS (38). These cell lines included the NCI panel of 60 human tumor cell lines (39) plus 23 additional human tumor lines maintained in our laboratory.

Statistical analysis

Comparisons of protein expression data derived from the NCI panel of 60 human tumor cell lines were made with other biomarker data using Spearman and Pearson test statistics for nonbinary patterns and Fisher’s exact test for pairs of binary data. In both cases, p values were calculated from two-tailed t-distributions and adjusted using a Bonferroni correction for multiple correlations (39). Correlations of the expression patterns of the different TRAF proteins with responses of these cell lines to various cytotoxic drugs and compounds can be found at http://dtp.nci.nih.gov. TRAF1 protein levels in B-CLLs were compared by an unpaired t test, using immunoblot data that had been quantified by previously described methods (37, 38, 40).


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Characterization of anti-TRAF Abs

Antisera were raised in rabbits using synthetic peptides and recombinant proteins representing fragments of TRAF1, TRAF2, TRAF5, or TRAF6 as immunogens. To explore the specificity of these antisera, immunoblot analysis was performed using in vitro translated TRAF1, TRAF2, TRAF3, TRAF4, TRAF5, and TRAF6. The antisera raised against human TRAF1 aa 1–22 (Bur32), human TRAF2 aa 6–31 (Bur 34), murine TRAF5 aa 1–20 (1847), as well as human and murine TRAF6 aa 451–469 (Bur30) were determined to react specifically with the intended TRAF proteins, and did not cross-react with other members of the family (Fig. 1Go). Additional commercially available antisera for TRAF1 (H-132), TRAF2 (SC C20), TRAF5 (SC7220), and TRAF6 (H-274) were also determined to bind selectively to their intended TRAFs, based on immunoblot analysis of in vitro translated TRAF1 through TRAF6 (Fig. 1Go). The specificity of these anti-TRAF antisera was also confirmed through experiments where epitope-tagged versions of TRAF1, TRAF2, TRAF5, or TRAF6 were transiently expressed in 293T cells and lysates from the transfected cells were subjected to SDS-PAGE/immunoblot analysis (data not shown).



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FIGURE 1. Characterization of anti-TRAF antisera by immunoblot analysis of in vitro translated TRAF family proteins. Plasmids containing cDNAs encoding human TRAF1, TRAF2, TRAF3, TRAF4, TRAF5, and TRAF6 were used for in vitro translation of these proteins in the presence of [35S]-L-methionine. Equal volumes of the translation lysates were analyzed by SDS-PAGE (10% gels), transferred to nitrocellulose filters, and analyzed by immunoblotting using antisera directed against TRAF1 (H-132), TRAF2 (C20), TRAF5 (H-257), or TRAF6 (bur30). Abs were detected by an ECL method. Bottom, Autoradiogram resulting from exposure of a blot to x-ray film, confirming production of all in vitro translated 35S-labeled proteins. Similar results were obtained with additional Abs not shown here.

 
Expression of TRAFs in normal tissues

Detergent lysates were prepared from normal tissues, normalized for total protein content, and expression of TRAFs was analyzed by SDS-PAGE/immunoblotting using antisera with specificity for TRAF1, TRAF2, TRAF5, or TRAF6. These experiments revealed tissue-specific differences as well as some similarities in the relative steady-state levels of these TRAF family members in human tissues. For example, the most abundant amounts of the TRAF1, TRAF2, and TRAF6 proteins were detected in thymus, testis, and epidermis (Fig. 2Go). By comparison, TRAF1 and TRAF6 were far less prevalent (as a percentage of total proteins) in most other tissues, whereas TRAF2 was more widely expressed and was found at levels that were within a few fold of those seen in the high-expressing tissues. Levels of TRAF5 were highest in thymus and epidermis.



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FIGURE 2. Immunoblot analysis of TRAF1, TRAF2, TRAF5, and TRAF6 expression in normal human tissues. Detergent lysates were prepared from various normal human tissues, normalized for total protein content (50 µg), and subjected to SDS-PAGE/immunoblot assay using antisera specific for TRAF1, TRAF2, TRAF5, or TRAF6. Ab detection was accomplished by an ECL method.

 
As shown in Fig. 2Go, the expected endogenous ~50- to 53-kDa TRAF1, ~60- to 64-kDa TRAF2, ~64-kDa TRAF5, and ~66-kDa TRAF6 proteins were the most abundant bands detected in SDS-PAGE/immunoblot assays. However, additional minor bands of lower molecular mass were seen in some cases, presumably representing partial degradation products of these TRAFs, which may arise during tissue harvesting or processing (Fig. 2Go). Higher molecular mass forms of TRAF2 arise from posttranslational modifications, including ubiquitination (data not shown). Rare isoforms of TRAFs arising from alternative mRNA splicing cannot be excluded. Similar results were obtained in those cases where two or more TRAF-selective Abs were available (data not shown), further confirming the validity of these results.

Immunohistochemical localization of TRAFs in tissue sections

Using antisera specific for TRAF1, TRAF2, TRAF5, or TRAF6, the in vivo patterns of expression of these proteins were examined in normal human or murine tissues by immunohistochemistry methods. Overall, the cell type-specific patterns of expression of these four TRAF family members were strikingly different, indicating that they are all independently regulated to a large extent. Table IGoGoGo presents a comprehensive summary of the immunostaining results for TRAF1, TRAF2, TRAF5, and TRAF6, and also includes for comparison our previously published observations for TRAF3 and TRAF4 (25, 26). In the vast majority of instances, immunostaining for TRAFs was confined to the cytosol, though occasionally nuclear immunostaining was also found (Table IGo).


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Table I. TRAFs immunoreactivity in normal human and mouse tissues

 

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Table 1A. Continued

 

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Table 1B. Continued

 
Fig. 3Go presents some examples of TRAF1, TRAF2, TRAF5, and TRAF6 immunostaining data for the lymphoid and hemopoietic organs of lymph node, spleen, thymus, and bone marrow. These tissues are emphasized because many of the TNF family cytokine receptors to which TRAFs bind are prominently involved in the physiology of these organs. Note that although several TRAFs were expressed in the GC lymphocytes of lymph nodes (all except TRAF4), small resting lymphocytes in the interfollicular regions of nodes were typically immunonegative for all TRAFs (Fig. 3Go; Table IGo). Thus, expression of TRAFs in lymphocytes may be dynamically regulated in vivo with changes in lymphocyte activation. Interestingly, TRAF6 was the only TRAF family member expressed at immunodetectable levels in cortical thymocytes, whereas TRAF3 was the only member detected in medullary thymocytes (Fig. 3Go; Table IGo). Thus, TRAF expression may be modulated during thymocyte differentiation. Differences in the intensity of TRAF immunoreactivities in myeloid progenitor cells and mature granulocytes in bone marrow similarly suggest fluctuations in the expression of these proteins during hemopoietic differentiation. Additional details are provided in Table IGo. It should be noted that because of the nonquantitative nature of immunohistochemistry, these data should be interpreted as only approximations of the relative amounts of these TRAF family proteins in various types of cells in vivo.



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FIGURE 3. Immunohistochemical analysis of TRAF family proteins in normal lymphoid and hemopoietic tissues. Representative examples of TRAF1 and TRAF2 (human tissues), and TRAF5 and TRAF6 (murine tissues), immunostaining are shown for lymph node, thymus, spleen, and bone marrow. Ab detection was accomplished by a diaminobenzidine method (brown), and nuclei were counterstained with hematoxylin (blue). Photomicrographs represent x60 to x400 original magnification. Some of the salient features include 1) for TRAF1, overexpression in dendritic cells located in the interfollicular zone of the lymph node, T cell zone in the spleen, and thymic medulla; only multinucleated megakaryocytes are positive in bone marrow; 2) for TRAF2, only a subset of dendritic cells in the lymph node, spleen, and thymic cortex is strongly stained. In the bone marrow, myeloid precursors, granulocytes, monocytes, and plasma cells express TRAF2; 3) for TRAF5, histiocytes in lymph node sinuses and in the red pulp of spleen as well as epithelioreticular cells in the thymic medulla and cortex contain TRAF5 staining. In bone marrow, TRAF5-positive cells include myeloid precursors, mature neutrophils, and megakaryocytes; and 4) for TRAF6, in nodes, GC lymphocytes are commonly positive as are the occasional dendritic cells. Endothelial cells are strongly TRAF6 immunopositive in blood vessels in the spleen. Nearly all immature cortical T cells in thymus but not the differentiated thymocytes in the medulla are strongly positive for TRAF6. In bone marrow, megakaryocytes demonstrate an intense staining, whereas myeloid precursors and neutrophils are moderately positive.

 
Inducible expression of TRAFs in PBLs and GC B cells

To explore whether changes in TRAF family protein might occur during lymphocyte activation, PBLs (representing mostly T cells) were cultured for various times with or without PHA and IL-2 or with OKT3 monoclonal anti-CD3 Ab. As shown in Fig. 4GoA, unstimulated PBLs contained little or no detectable TRAF1, TRAF2, TRAF5, or TRAF6 when initially placed into culture and during up to 6 days of culture in the absence of mitogens or lymphokines (with the exception of TRAF6, where a slight increase in protein levels was also detected after several days of culture without stimulus). In contrast, marked increases in all of these TRAF family proteins were induced by anti-CD3 Ab and by the combination of PHA and IL-2. However, note that because elevations in TRAFs occurred relatively late in these cultures, it is unlikely that PHA, anti-CD3, or IL-2 are directly responsible.



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FIGURE 4. Induction of TRAF expression in PBLs and GC B cells. Lysates were prepared, normalized for total protein content (25 µg), and subjected to SDS-PAGE/immunoblot assay using antisera specific for TRAF1, TRAF2, TRAF3, TRAF5, and TRAF6. A, PBLs were cultured with or without anti-OKT3 Ab (2.5 µg/ml) or with PHA (5 µg/ml) and recombinant IL-2 (50 U/ml) for various times as indicated. B, GC B cells were cultured for 1 day with or without CD40L (100 ng/ml).

 
TRAF expression was also studied in freshly isolated GC B cells. Unstimulated GC B cells contained TRAF2, TRAF3, TRAF5, and TRAF6 but not TRAF1. In contrast, stimulation of these B cells with CD40L triggered striking increases in TRAF1 expression, but resulted in no significant changes in the levels of TRAF2, TRAF3, TRAF5, and TRAF6 (Fig. 4GoB). Probing the same blots with Abs specific for other proteins, such as caspase-10 and poly(ADP-ribose) polymerase, demonstrated the specificity of these CD40L-induced changes in TRAF expression and also confirmed loading of approximately equal amounts of total protein in all lanes (data not shown).

Analysis of TRAF protein levels in human tumor cell lines

Lysates were prepared from 83 human tumor cell lines, representing a wide range of malignancies, including the entire NCI 60 cell line anticancer drug screening panel (38). After normalization for total protein content (50 µg/lane), samples were subjected to immunoblot analysis using various anti-TRAF Abs. Fig. 5Go shows a representative example of some immunoblot data obtained for TRAF1, TRAF2, TRAF3, TRAF5, and TRAF6. Though the most abundant bands seen in immunoblot analyses corresponded to the anticipated molecular masses for each of these TRAF family members, in some cases additional bands were also observed in lesser amounts, possibly representing posttranslationally modified versions of TRAFs, low abundance isoforms arising from alternative mRNA splicing, or partially degraded proteins.



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FIGURE 5. Examples of immunoblot analysis of TRAF family protein expression in tumor cell lines. Representative immunoblot data are presented for expression of TRAF1, TRAF2, TRAF3, TRAF5, and TRAF6 in human tumor cell lines. Tumor cell lysates were normalized for total protein content (50 µg) before SDS-PAGE/immunoblotting.

 
Using in vitro translated radiolabeled TRAF proteins to create standard curves for extrapolation, the relative amounts of each TRAF were estimated for each tumor cell line. Only the most prevalent, expected molecular mass band for each TRAF was quantified, thus the results do not include the lower abundance modified or alternative isoforms of TRAF1, TRAF2, TRAF3, TRAF5, and TRAF6. Fig. 6Go summarizes the results, expressing the data as nanograms of TRAF protein per milligram of total protein. TRAF2, TRAF3, TRAF5, and TRAF6 were widely expressed among various types of cancer cell lines, although the levels of TRAF2 and TRAF3 tended to be higher by 2- to 3-fold overall compared with TRAF5 and TRAF6. In contrast, expression of TRAF1 was far more restricted. The most consistent and highest levels of expression of TRAF1 were found in B cell lines. Indeed, all B cell lines tested contained detectable levels of TRAF1, including the B cell lymphoma lines RL, Raji, DND39, MuTu, SU-DHL.1, and RS11846, the lymphoblastoid B cell line BJAB, and the pre-B cell leukemia 380, which arose from an antecedent non-Hodgkin B cell lymphoma (41). The pre-B cell line 697 and all T cell lines tested failed to express TRAF1, as did all myeloid leukemia lines tested except the SR line. However, the AML2 cell line did contain a smaller molecular mass anti-TRAF1 reactive protein, which remains to be characterized.



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FIGURE 6. Summary of TRAF family protein expression in 83 human tumor cell lines. x-ray films resulting from immunoblot analysis were analyzed by scanning densitometry as described (37 ). Data were compared with a standard curve generated using 35S-labeled, in vitro translated TRAFs, and the nanograms of TRAF per milligram of total protein were calculated and displayed as bar histograms for 83 human tumor cell lines.

 
Statistical comparisons of TRAF1, TRAF2, TRAF3, TRAF5, and TRAF6 protein levels with other biomarkers previously assessed in the 60 cell line drug screening panel revealed no correlations. However, interestingly, TRAF6 data were positively correlated with TRAF2 (p = 0.0006; r = 0.375) and TRAF3 (p = 0.0001; r = 0.4112). TRAF2 was also correlated with TRAF3 (p = 0.0007; r = 0.3665).

TRAF1 expression in NHLs

The abundant expression of TRAF1 in B cell lines prompted us to explore the expression of this TRAF family member in NHLs. Patient specimens used for these studies represented archival paraffin blocks obtained from a variety of ECOG trials. A total of 232 lymphoma specimens were immunostained using anti-TRAF1 Ab, and the immunostaining results were scored with respect to the percentage of TRAF1-immunopositive neoplastic cells (0–100%). Based on comparisons with non-neoplastic nodes, the presence of >=30% immunopositive malignant lymphocytes was chosen as a cut-off for dichotomizing immunostaining data into positive vs negative groups. Using this method, 112 of 232 (48%) lymphomas were determined to be TRAF1 positive, having percentages of TRAF1 positive exceeding those found in non-neoplastic reactive lymph node biopsies (n = 6). Fig. 7Go shows some representative examples of TRAF1 immunostaining in a reactive node compared with lymphomas, including a TRAF1-negative follicular small cleaved-cell lymphoma (FSCCL), a TRAF1-positive follicular mixed small/large cell lymphomas, and a TRAF1-positive diffuse large cell lymphoma (DLCL). In normal and reactive nodes, note that although follicular dendritic cells and extrafollicular histiocytes were stained intensely for TRAF1, only occasional large (activated) GC lymphocytes were TRAF1 immunopositive. Similarly, only occasional malignant B cells were stained for TRAF1 in the FSCCL specimen shown in Fig. 7Go, though TRAF1-positive dendritic cells and histiocytes were prevalent in the same tissue section. In contrast, a substantial proportion of the malignant lymphocytes was strongly stained for TRAF1 in the follicular mixed small/large cell lymphomas and DLCL specimens presented (Fig. 7Go).



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FIGURE 7. Comparisons of TRAF1 immunostaining in normal and malignant lymph nodes. Representative examples of TRAF1 immunostaining in normal lymph nodes and lymphomas are presented. Data represent photomicrographs taken at x150 (top) and x400 (bottom) original magnification for (from left to right) a non-neoplastic reactive node biopsy, FSCCL, a follicular lymphoma with mixed small cleaved and large cells (FMCL), and a DLCL. The inset shown for the reactive node represents a higher power view (x1000 original) of follicular dendritic cells, with strong TRAF1 immunostaining. Only occasional lymphocytes in nodes display TRAF1 immunopositivity, whereas follicular and extrafollicular dendritic cells and histiocytes commonly exhibit strong TRAF1 immunoreactivity. In FSCCL, most of the malignant small cleaved cells are immunonegative. In FMCL, the larger transformed lymphocytes are prominently stained for TRAF1. In DLCL, most of the malignant cells contain moderate to strong intensity TRAF1 immunoreactivity.

 
Table IIGo summarizes the TRAF1 immunostaining results, correlating the TRAF1 data with lymphoma histology. Because of the archival nature of these specimens, outdated methods for histopathological categorization were used (mostly NCI working formulation) at the time these specimens were collected and entered into ECOG databases. Thus, only tentative conclusions can be drawn with respect to histology. However, approximately equivalent proportions of lymphomas with nodular (follicular) (51/107; 48%) vs diffuse (61/125; 49%) cytoarchitecture were TRAF1 immunopositive. Comparisons of lymphomas according to cell size (small cells vs large cells) suggested a greater tendency of large cell lymphomas to be TRAF1 immunopositive than small cell lymphomas (73/133 (55%) large cell vs 19/59 (32%) small cell) (p = 0.004). However, using the histopathological diagnoses to correlate TRAF1 immunostaining with lymphoma cell size may have underestimated these differences, because in 31 of 40 (78%) mixed small and large cell lymphomas, TRAF1-immunopositive cells nevertheless were predominantly larger malignant cells (Fig. 7Go). Altogether, TRAF1 expression appears to be up-regulated compared with normal nodes in roughly half of NHLs.


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Table II. TRAF 1 expression in lymphomas1

 
TRAF1 protein levels are elevated in B-CLLs

TRAF1 expression in B-CLL specimens was also evaluated using immunoblotting methods (37), including 21 previously untreated and 28 treatment-refractory patients. Comparisons were made with purified normal peripheral blood B lymphocytes (n = 4). Though a limited comparison, TRAF1 protein levels appeared to be higher in many B-CLLs than in normal B cells (Fig. 8Go). Moreover, treatment-refractory B-CLLs contained significantly higher levels of TRAF1 compared with previously untreated B-CLLs (p = 0.03 by unpaired t test) or normal peripheral blood B lymphocytes (p = 0.01). Thus, TRAF1 protein levels may be pathologically elevated in some B-CLLs, with higher TRAF1 possibly representing a progression event or adaptation associated with resistance to chemotherapy.



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FIGURE 8. TRAF1 protein levels are elevated in B-CLLs. Detergent lysates were prepared from B cells purified from normal PBLs, previously untreated B-CLLs, and refractory B-CLLs. After normalization for total protein content (25 µg), samples were subjected to SDS-PAGE/immunoblot analysis using anti-TRAF1 antiserum. Data were collected by an ECL method with exposure to x-ray film, followed by quantitation by scanning densitometry. Data are expressed relative to positive control cell lysate derived from the RS11846 lymphoma cell line (set at 100%), which served as an internal standard on all blots, as described (37 ).

 

    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
In this report, we elucidated for the first time the in vivo patterns of expression of several members of the TRAF family of signal transducing adapter proteins, including TRAF1, TRAF2, TRAF5, and TRAF6. Because similar data have previously been published for TRAF3 and TRAF4 (25, 26), the data provided here now complete the expression analysis for all currently known TRAF family proteins. The analysis of TRAF expression by immunohistochemistry reveals tissue and cell type-specific expression of all members of the TRAF family, and suggests great diversity in the repertoire of TRAFs present within various types of cells at particular points in their differentiation. With six family members, if each were independently regulated, 64 combinations of TRAF family protein expression would be theoretically possible, thus providing enormous opportunities for individualizing the intracellular signal transduction pathways that specific types of cells use for responding to the TNF/Toll family cytokine receptors, which rely on TRAFs for their functions.

One of the reasons why differences in the expression of combinations of TRAF family proteins can have important implications relates to hetero-oligomerization among TRAFs. In particular, interactions of some TRAF family members with certain TNF family receptors are dependent on hetero-oligomerization with other TRAFs. For example, although TRAF1 can directly interact with the cytosolic domain of CD30, it does not directly bind the cytosolic domains of TNFR1, TNFR2, and CD40, depending instead on recruitment to these receptors through association with TRAF2 (5, 6, 8, 9, 42). Thus, TRAF1 depends on TRAF2 for its association with certain TNF family receptors. Moreover, TRAF1/TRAF2 heterodimers have been shown to recruit the antiapoptotic proteins cIAP1 and cIAP2 to TNFR1 and TNFR2 receptors (43). The simultaneous combination of TRAF1, TRAF2, cIAP1, and cIAP2 protein expression has been reported to be required for optimal suppression of caspase-8 activation induced by TNFR1, thus preventing TNFR1-induced apoptosis (44). Thus, it may be of relevance to mechanisms of apoptosis suppression in the context of responses to TNF-{alpha} that several types of cells appear to express TRAF1 in the absence of TRAF2 (based on immunohistochemical analysis of normal tissues), including dendritic cells in nodes, thymus, and spleen, as well as megakaryocytes, smooth muscle cells, neurons in peripheral autonomic ganglia, and selected types of epithelial cells (Table IGo). Similarly, TRAF5 directly binds the cytosolic domain LTßR (45), but relies on hetero-oligomerization with TRAF3 for its association with CD40 (8). The interdependence of TRAF3 and TRAF5 coexpression is underscored by the observation that TRAF5 can activate kinases involved in NF-{kappa}B induction and JNK activation, whereas TRAF3 does not (45, 46). Thus, CD40-expressing cells that contain TRAF5 in the absence of TRAF3 presumably cannot use TRAF5 for CD40 signal transduction responses. Examples of TRAF5 expression in the absence of immunodetectable TRAF3 were found by immunohistochemical analysis in interdigitating reticulum cells of nodes (paracortex), thymus, and spleen; follicular dendritic cells of GCs; as well as in macrophages and histiocytes, all cell types that are known to express CD40 and respond to CD40L. Thus, one presumes that these types of cells rely upon other NF-{kappa}B- and JNK-activating TRAF family members, besides TRAF5, which are known to bind the cytosolic domain of CD40.

Our studies with isolated PBLs and GC B cells suggest that expression of TRAFs can be dynamically regulated in response to various stimuli that induce lymphocyte activation, proliferation, or differentiation. Though little or no TRAF1, TRAF2, TRAF3, TRAF5, or TRAF6 protein was found in circulating resting PBLs, expression of all of these TRAF family members was induced by TCR complex ligation using anti-CD3 Ab or other T cell mitogens. Because TRAFs participate in signaling by a variety of TNF family receptors (CD27, CD30, and OX4B), which provide costimulatory functions in T cell responses (47, 48, 49, 50), the inducibility of TRAF expression suggests a mechanism for ensuring that only Ag-stimulated T cells are competent to respond to costimulatory signals for TNF family cytokines. In this regard, in vitro studies of mature T cells isolated from TRAF knockout mice indicate that TRAF3 is essential for proliferative responses of T cells, whereas TRAF6 is not (20, 23). Moreover, CD28-independent costimulation of resting T cells by the TNFR family member 4-1BB has been demonstrated to require TRAF2 (51). Thus, a critical role exists for TCR-inducible expression of certain TRAF family members in T cell-proliferative responses. Furthermore, poststimulatory degradation of TRAFs may help to ensure that T cells are competent to respond to costimulatory TNF family ligands during only a brief window, as has been documented recently for the case of CD30-dependent degradation of TRAF2 (52).

In contrast to peripheral blood T cells, GC B cells constitutively expressed TRAF2, TRAF3, TRAF5, and TRAF6. Previous studies have shown that GC B cells do not express TRAF4 (26). Thus, these cells, which respond to CD40, possess a diversity of TRAFs, suggesting that they are poised to rapidly respond to CD40L within the microenvironment of the GC. Among the five TRAF family proteins surveyed, only TRAF1 was induced by CD40L. Recent studies have demonstrated that TNF-{alpha} and CD40L induce TRAF1 mRNA expression (53), consistent with our results.

Many TNF family receptors are expressed on malignant cells, providing opportunities for modulating tumor cell growth, Ag-presenting capacity, and sensitivity to apoptotic agents such as anticancer drugs. TNF derives its name from early investigations of this cytokine that suggested that it might be selectively cytotoxic to tumor cells, sparing normal cells. Differences in sensitivity to TNF-{alpha}-induced cell death have been linked to TRAF-dependent signal transduction responses, including NF-{kappa}B-dependent and -independent mechanisms (54, 55, 56). Thus, alterations in the levels and ratios of various TRAF family proteins can translate into differences in tumor cell sensitivity to TNF-mediated cytotoxicity. For example, TRAF1 and TRAF2, in combination, reportedly promote resistance to TNF-induced apoptosis at a proximal step, squelching activation of the apical caspase in the death receptor pathway, namely, pro-caspase-8 (44). Thus, elevated levels of TRAF1 or TRAF2 might promote tumor cell resistance to TNF-{alpha} and related death ligands such as Apo3L (DR3-Ligand), whose receptors use very similar signaling mechanisms (57). Conversely, overexpression of TRAF3 can interfere with NF-{kappa}B induction by TNFR1, CD40, and TRAF2, in at least some circumstances (58), suggesting that reductions in TRAF3 levels might provide tumor cells with improved resistance to TNF-mediated cytotoxicity. Similarly, TRAF3 has been implicated as an important mediator of the growth-suppressing and apoptosis-sensitizing effects of LTßR and CD40 on epithelial cancer cells (59, 60, 61). However, because NF-{kappa}B and other TRAF-activated signaling pathways also can up-regulate expression of molecules involved in Ag presentation, promoting NF-{kappa}B induction may have disadvantages in terms of tumor avoidance of immune recognition. The immunoblot analysis of TRAF protein levels in 83 tumor cell lines, when compared with the patterns of TRAF expression observed in normal tissues by immunohistochemical methods, suggests some possible tumor-specific alterations in TRAF family protein expression. For instance, though TRAF1 was not present at immunodetectable levels in normal mammary epithelium, some breast cancers contained abundant amounts of TRAF1 protein. Similarly, although TRAF2 was not detectable by immunostaining in normal prostatic epithelium, most prostate cancer cell lines contained high levels of TRAF2 protein. Conversely, although normal colonic epithelial cells were uniformly TRAF3 immunopositive, most colon cancer cell lines lacked expression of TRAF3, suggesting cancer-associated down-regulation of TRAF3 expression.

Examination of TRAF1 expression in lymphomas suggests that striking up-regulation occurs commonly in these neoplasms, particularly during transformation of the malignant cells to large cell disease. Although normal lymphocytes can be induced to express TRAF1, immunohistochemical analysis of normal lymph nodes and other peripheral lymphoid organs suggests that relatively small percentages of normal (presumably activated) lymphocytes express this particular member of the TRAF family in vivo. In contrast, much higher percentages of malignant lymphoma cells commonly expressed TRAF1, implying a deregulation in TRAF1 expression. B cell lymphoma cell lines were also the most consistent expressers of TRAF1 among the 83 human tumor cell lines examined in vitro, suggesting that TRAF1 overexpression does not require unique microenvironments found in lymphoid organs in vivo and implying autonomous deregulated expression of this TRAF family member in these malignancies. Furthermore, circulating B-CLLs also commonly contained high levels of TRAF1, and recently it has been reported that Reed-Sternberg cells of Hodgkin’s disease and EBV-transformed lymphoid cells also express high levels of TRAF1 (62). The molecular explanation for the aberrant expression of TRAF1 in lymphomas and B-CLLs remains to be revealed. The chromosomal locus where the TRAF1 gene resides in humans is not frequently involved in chromosomal translocations or other cytogenetic abnormalities typically seen in lymphomas or leukemias (63). The promoter of the TRAF1 gene contains several NF-{kappa}B binding sites and is highly inducible by NF-{kappa}B (53). Thus, deregulation of signal transduction pathways that control NF-{kappa}B represents at least one hypothetical mechanism by which TRAF1 overexpression could occur in lymphomas and B-CLLs. Though the functional significance of constitutively elevated levels of TRAF1 remains to be fully elucidated, T cells of transgenic mice engineered to overexpress TRAF1 display resistance to Ag-induced apoptosis in vitro and in vivo (18). Thus, elevated TRAF1 levels may endow malignant lymphocytes with enhanced protection from apoptosis induced either intrinsically by Ag receptor-mediated induction of TNF family death receptors and ligands (18) or extrinsically by other immune effector cells. Future studies of TRAF1 expression in cohorts of lymphoma and B-CLL patients receiving uniform therapy are needed to establish whether expression of this TRAF family member is of prognostic significance with respect to clinical outcome.


    Acknowledgments
 
We thank E. Sausville and D. Scudiero for providing access to the NCI tumor panel and performing statistical analysis, and R. Cornell for manuscript preparation.


    Footnotes
 
1 This work was supported by National Institutes of Health/National Cancer Institute Grant CA-69381 and the U.K. Medical Research Council (to J.G.), and NS36821 (to S. Krajewski). J.M.Z. was a fellow of the Lymphoma Research Foundation of America and is currently supported by the Lady Tata Memorial Foundation, and J.G. is a Medical Research Council Non-Clinical Research Professor. Back

2 Address correspondence and reprint requests to Dr. John C. Reed, The Burnham Institute, 10901 North Torrey Pines Road, La Jolla, CA 92037. Back

3 Abbreviations used in this paper: TRAF, TNFR-associated factor; DLCL, diffuse large cell lymphoma; NHL, non-Hodgkin lymphoma; B-CLL, B cell chronic lymphocytic leukemia; CD40L, CD40 ligand; FSCCL, follicular small cleaved-cell lymphoma; LTßR, lymphotoxin-ß receptor; JNK, c-Jun N-terminal kinase; ECOG, Eastern Cooperative Oncology Group; ECL, enhanced chemiluminescence; GC, germinal center; NCI, National Cancer Institute; KLH, keyhole limpet hemocyonin. Back

Received for publication March 13, 2000. Accepted for publication August 9, 2000.


    References
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 

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