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The Journal of Immunology, 2000, 165: 2481-2490.
Copyright © 00 by The American Association of Immunologists

Evidence for Two Subgroups of CD4-CD8- NKT Cells with Distinct TCR{alpha}ß Repertoires and Differential Distribution in Lymphoid Tissues1

Irina Apostolou2,*, Ana Cumano{dagger}, Gabriel Gachelin* and Philippe Kourilsky*

* Unité de Biologie Moléculaire du Gène, Institut National de la Santé et de la Recherche Médicale Unité 277, and Institut Pasteur, Paris, France; and the {dagger} Unité du Développement des Lymphocytes, Institut Pasteur, Paris, France


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
NKT cells are a subset of T lymphocytes that is mainly restricted by the nonclassical MHC class I molecule, CD1d, and that includes several subpopulations, in particular CD4+ and CD4-CD8- (DN) cells. In the mouse, differential distribution of these subpopulations as well as heterogeneity in the expression of various markers as a function of tissue localization have been reported. We have thus undertaken a detailed study of the DN NKT cell subpopulation. With a highly sensitive semiquantitative RT-PCR technique, its TCR repertoire was characterized in various tissues. We found that mouse DN NKT cells are a variable mixture of two subgroups, one bearing the invariant V{alpha}14 chain paired to rearranged Vß2, Vß7, Vß8.1, Vß8.2, or Vß8.3 ß-chains and the other exhibiting unskewed {alpha}- and ß-chains. The proportion of these subgroups varies from about 100:0 in thymus, 80:20 in liver, and 50:50 in spleen to 20:80% in bone marrow, respectively. Finally, further heterogeneity in the tissue-derived DN NKT cells was discovered by sequencing extensively Vß8.2-Jß2.5 rearrangements in individual mice. Despite a few recurrences in TCR sequences, we found that each population exhibits its own and broad TCRß diversity.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Natural killer T cells are a subset of T cells that can be distinguished from conventional T cells by several features. Most of these cells express NK-associated markers, like the NK1.1 and Ly-49 molecules, an intermediate level of TCR and are CD4+ or CD8-CD4- double negative (DN)3 (1, 2, 3, 4, 5). In the thymus, most of these cells express an invariant V{alpha}14J{alpha}15 TCR {alpha}-chain with TCRß-chains predominantly skewed toward Vß8.2 chains (1, 2, 3, 6, 7, 8). In contrast to conventional T cells, which recognize peptides presented by polymorphic MHC molecules, most NKT cells are restricted by a monomorphic MHC class I molecule, CD1d (4, 9, 10), and a sugar moiety of glycolipids bound to CD1d molecules triggers their activation (11, 12, 13, 14, 15, 16, 17).

A recent study has pointed out the different tissular segregation of two NKT cell types (18). One cell type is CD1d restricted, is present in all lymphoid organs, and has a CD4+ or DN phenotype. Its development is mainly thymus dependent. The second one, enriched in spleen and bone marrow, has a CD8+ or DN phenotype, is not CD1d restricted, and develops independently of the thymus. It was further shown that thymus and liver, which are enriched in absolute numbers of CD1d-dependent CD4+ and DN NKT cells, are also enriched in NKT cells with a low expression of NK receptors (Ly-49A and DX5), a memory/activated phenotype (CD62L-CD69+), and a TCR repertoire characterized by an overrepresentation of Vß8.2+ chains and an under-representation of four {alpha}-chains other than the invariant V{alpha}14 one (18, 19, 20). Conversely, spleen and bone marrow, which are enriched in absolute numbers of CD1d-independent CD4+, DN, and CD8+ NKT cells, are also enriched in NKT cells with a higher expression of NK receptors, a "naive" phenotype (CD62L+CD69-), and a less skewed TCR repertoire (18, 19, 20). Previous work have suggested that tissue-specific and/or cell type-specific ligands could be responsible for the distinct TCR reactivities of CD1d-restricted DN NKT cell hybridomas, derived from different tissues (9, 10, 21, 22). Because the V{alpha}14J{alpha}15 invariant rearrangement is generated at random (8), its expression by an important fraction of NKT cells suggests that some selective pressure is exerted on the TCR of these cells.

This tissue heterogeneity of NKT cells led us to examine in more detail, in individual mice, the TCR chain components expressed by the DN NKT cell subpopulation of various tissue localizations. Due to the small number of NKT cells recovered from an individual organ and the lack of many anti-TCR-Vß- and anti-TCR-V{alpha}-specific Abs, a powerful RT-PCR technique was used to quantify the Vß usage and the V{alpha}14 invariant chain expression by thymic, hepatic, splenic, and bone marrow DN NKT cells of individual mice. We found that DN NKT cells localized in different tissues display polyclonal and different TCR repertoires and further demonstrated that these differences reflect the coexistence of two subgroups of DN NKT cells, the proportion of which varies depending on the tissue. DN NKT cells of subgroup I express exclusively the invariant V{alpha}14 chain paired with Vß2, Vß7, Vß8.1, Vß8.2, and Vß8.3 chains and represent ~100, 80, 50, and 20% of DN NKT cells in thymus, liver, spleen, and bone marrow, respectively. In contrast, DN NKT cells of subgroup II express other TCR {alpha}-chains paired with unbiased Vß chains. To further characterize the various DN NKT cell populations, we extensively sequenced the Vß8.2-Jß2.5 rearrangements and found that each tissue contains DN NKT cells with a unique TCRß diversity.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Mice

Female 8- to 12-wk-old C57BL/6 mice used for this study were purchased from IFFA-Credo (l’Arbresle, France). They were maintained under specific pathogen-free conditions.

Cell preparation

Single-cell suspensions were prepared from thymus, liver, spleen, and bone marrow (femur, tibia). Hepatic leukocytes were recovered from PBS-perfused liver, as described elsewhere (23). After a preincubation step with the 2.4G2 mAb, thymic and hepatic cells were incubated with biotinylated anti-CD8, whereas splenic and bone marrow cells were incubated with biotinylated anti-CD8, anti-CD19, anti-MacI, and anti-GR1 mAbs. After four washes, streptavidin-conjugated beads (Dynal, Oslo, Norway) were added, and the depletion was performed according the procedure described in the Dynal manual. Depleted cell suspensions were recovered after 10 washes.

Antibodies

Anti-Fc{gamma} III/II receptors (2.4G2), PE-anti-NK1.1 (PK136), FITC-anti-TCRß (H57-597), biotinylated and allophycocyanin-anti-CD4 (RM4-5), biotinylated anti-Ly-6G (RB6-8C5), biotinylated anti-CD19 (1D3), biotinylated anti-CD11b (M1/70), biotinylated anti-CD62L (MEL-14) mAbs, and streptavidin-allophycocyanin were purchased from PharMingen (San Diego, CA). Biotinylated anti-CD8 (CT-CD8a) and streptavidin-tricolor were from Caltag (South San Francisco, CA), and streptavidin red 613 was from Life Technologies (Gaithersburg, MD).

Flow cytometry

After incubation with the 2.4G2 mAb, depleted cell suspensions were stained with anti-NK1.1, anti TCRß, anti-CD4, and anti-CD62L (for the four-color cell sorting) mAbs for 30 min on ice. After four washes, cells were incubated with streptavidin conjugate for 15 min, washed, and resuspended in PBS, 1% FCS. The three-color and four-color cell sortings were performed on a FACStarPlus (Becton Dickinson, Mountain View, CA) and an Epics-Elite ESP (Beckman Coulter, Fullerton, CA), respectively.

RNA extraction and cDNA synthesis

Total RNA from sorted DN NKT cells was extracted and reverse-transcribed using the avian myeloblastosis virus reverse transcriptase (Boehringer Mannheim, Mannheim, Germany), as previously described (24).

Primers

Vß-specific primers, with the exception of Vß8.2, have been described elsewhere (25). The Vß8.2-specific primer was TTCATATGGTGCTGGCAGCACT, and the labeled Cß-specific primer was 6-carboxyfluorescein (FAM)-CTTGGGTGGAGTCACATTTCTC. V{alpha}-specific primers, with the exception of V{alpha}9, V{alpha}15, and V{alpha}14, have been described previously (26). V{alpha}9-, V{alpha}15-, and V{alpha}14-specific primers were ACACCGTTGTTAAAGGCACC, GAGCCAAAGACTTATAGTTTT, and CTAAGCACAGCACGCTGCACA, respectively. The labeled C{alpha}-specific primer was FAM-ACACAGCAGGTTCTGGGTTC. Primers for CD3{epsilon} were 5'-primer GCCTCAGAAGCATGATAAGC and 3'-primer CCTTGGCCTTCCTATTCTTG, the one used for run-off reactions being 3'-FAM-CCCAGAGTGATACAGATGTC. The Jß2.5-specific primer was GAGCCGAGGAGCACAATCTCC.

Semiquantitative PCR and immunoscope analysis of the TCR repertoire

The number of CD3{epsilon} copies contained in each cDNA sample was quantified as follows. We used a plasmid bearing a 4-bp deleted CD3{epsilon}-specific sequence which can be amplified by the CD3{epsilon}-specific primers. From 106 to 102 copies of the plasmid were mixed to 1 µl of cDNA sample, and a 40-cycle competitive PCR was performed using the unlabeled CD3{epsilon} primers in a final volume of 25 µl. One microliter of the latter PCR was submitted to two cycles of run-off reaction, using the FAM-labeled CD3{epsilon} primer. Resulting fluorescent PCR products were loaded on a 6% polyacrylamide gel and run on a automated sequencer (Applied Biosystems, Foster City, CA). The exact number of CD3{epsilon} copies contained in each cDNA sample was determined using the immunoscope software (24, 27). Semiquantitative analyses of the TCR{alpha}ß repertoires were conducted as follows. cDNA containing 104 copies of CD3{epsilon}-specific cDNAs were subjected to 31 PCR cycles using either a Vß-specific primer and the Cß-fluorescent primer, or a V{alpha}-specific primer and the C{alpha}-fluorescent primer. Under such conditions, exponential PCRs were generated for all V-C combinations. The latter were run on an automated sequencer. The CDR3 length of PCR products and their fluorescence intensity were determined with the immunoscope software. When working on unprimed and polyclonal T cell populations, the CDR3 size distribution of each V-C-specific PCR product adopts a Gaussian-like distribution, composed of six to eight peaks separated by three nucleotides, because they derive from in-frame mRNAs. The area of peaks is proportional to the intensity of fluorescent band and thus to the initial amount of TCR transcripts. The percentage of fluorescence intensity of a given V-C combination was determined as the ratio of the area of all peaks generated in a single V-C PCR product to areas of all V-C-generated peaks in the T cell population.

Cloning and sequencing of the Vß8.2-Jß2.5 rearrangements

For each sample, an amount of cDNA containing 2 x 104 copies of CD3{epsilon} was amplified using Vß8.2- and Jß2.5-specific primers with 5 U Pfu DNA polymerase (Stratagene, La Jolla, CA) in the supplier’s buffer. PCR products were ethanol precipitated and cloned in the PCR-Blunt II-Topo vector from the Zero Blunt TOPO PCR Cloning Kit (Invitrogen, Carlsbad, CA), following the manufacturer’s instructions. Transformation of TOP10 One Shot-competent cells by the previous ligation products and sequencing of cloned Vß8.2-Jß2.5 rearrangements were performed as described (28). The error rate of sequences, consistent with the experimental procedure, as calculated on Vß8.2 and the Jß2.5 germline sequences, was 10-4 mutations/nucleotide.


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Variable TCR-Vß usage by DN NKT cells from various tissues

To address the question of whether DN NKT express distinct repertoires depending on the tissue they colonize, NK1.1+ TCRßintCD4-CD8- cells were sorted (>99% pure) from thymus, liver, spleen, and bone marrow of individual mice (Fig. 1Go). RNA was extracted from a defined number of cells in each population, and the TCR-Vß usage was measured by a semiquantitative RT-PCR procedure combined to the immunoscope technology, as described in Materials and Methods. Compared with conventional T cells, DN NKT cells from thymus and liver preferentially, although not exclusively, use Vß2, Vß7, Vß8.1, Vß8.2, and Vß8.3 segments (Fig. 2Go). The latter are found in similar proportion in the two organs (Table IGo). In spleen, the Vß usage of DN NKT cells is less skewed than in thymus and liver (Fig. 2Go), Vß7, Vß8.2, and Vß8.3 still being over-represented (Table IGo). Bone marrow-derived DN NKT cells display a Vß usage similar to that of conventional T cells (Fig. 2Go), the only noticeable difference being an over-representation of Vß7 and Vß8.2 chains (Table IGo).



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FIGURE 1. Sorted tissue-derived DN NKT cells. CD8- thymic and hepatic cells, as well as CD8-CD19-MacI-GR1- splenic and bone marrow cells which were purified from individual mice were sorted accordingly to the NK1.1+TCRintCD4- phenotype.

 


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FIGURE 2. TCR-Vß usage of tissue-derived DN NKT cells. Semiquantitative RT-PCR immunoscope analysis was performed on DN NKT cells ({blacksquare}) purified from thymus (A), liver (B), spleen (C), and bone marrow (D) of individual mice and on conventional T cells of lymph node origin ({square}). Results are representative of two independently tested mice. The x-axis depicts TCR-Vß segments, and the y-axis shows the percentage of their respective fluorescence intensity.

 

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Table I. Ratios of Vß2, Vß7, Vß8.1, Vß8.2, and Vß8.3 segment usages between DN NKT cells from various tissues and conventional T cells

 
Variable expression of the TCR-V{alpha}14 invariant chain by DN NKT cells from various tissues

All NKT cells do not express the invariant V{alpha}14 chain (7, 8, 14, 21). It was thus necessary to determine the proportion of V{alpha}14 invariant chain-bearing cells in the sorted DN subpopulations. Because the anti-V{alpha}14 Ab does not recognize all V{alpha}14+ NKT cells (Ref. 7 and data not shown), it precludes this investigation by flow cytometry; we thus used the same semiquantitative RT-PCR approach as above to analyze V{alpha}14 transcripts in DN NKT cells.

In thymus, liver, spleen, and bone marrow, the V{alpha}14C{alpha} immunoscope profiles of DN NKT cells display a single 10-aa CDR3 length peak (Fig. 3GoA) which was further identified to the V{alpha}14J{alpha}15 invariant rearrangement (data not shown). This, incidentally, confirms the purity of sorted DN NKT cells because conventional T cells show a polyclonal V{alpha}14C{alpha} profile with several CDR3 size peaks (Fig. 3GoA). Quantification of the invariant rearrangement by RT-PCR revealed, however, significant differences between tissues (Fig. 3GoB). Relative to the same number of TCR transcripts, expression was highest in thymus and liver, intermediate in spleen, and low in bone marrow. This observation implies that either all DN NKT cells express the V{alpha}14 invariant rearrangement, albeit at different levels, or that V{alpha}14+ cells are mixed with variable amounts of V{alpha}14- cells. Because ß-chain expression, as measured by flow cytometry analysis, was similar in all cases, we favored the latter hypothesis. Because thymic DN NKT cells were reported to express almost exclusively the invariant V{alpha}14 chain (2), a reasonable assumption is that thymus, liver, spleen, and bone marrow might contain ~0, 20, 50, and 80% of V{alpha}14- DN cells, respectively.



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FIGURE 3. V{alpha}14-C{alpha} rearrangements in tissue-derived DN NKT cells and in conventional T cells of individual mice. A, Immunoscope profiles of V{alpha}14-C{alpha} rearrangements in thymic (a), hepatic (b), splenic (c), and bone marrow (d) DN NKT cells and in conventional T cells (e). B, Semiquantitative analysis of V{alpha}14-C{alpha} rearrangements in the same populations. Data are representative of two independently tested mice. Fluorescence intensity is represented on the x-axis, and a value of 1 was arbitrarily attributed to the fluorescence intensity obtained with thymic DN NKT cells. That of conventional T cells corresponds to the value obtained from the peak with a 10-aa CDR3 length, because it is not possible to discriminate between the V{alpha}14 invariant rearrangement and irrelevant V{alpha}14 rearrangements of the same CDR3 size.

 
Spleen contains two subgroups of DN NKT cells characterized by distinct TCR repertoires and T cell activation marker expression

The fraction of cells overexpressing Vß2, Vß7, Vß8.1, Vß8.2, and Vß8.3 segments in the various tissues closely correlates with the proportion of putative V{alpha}14+ cells, suggesting the existence of two subgroups of DN NKT cells with distinct TCR repertoires. Thus, and since, consistent with a recent study (18), we found that the percentage of CD62L- DN NKT cells varies in different tissues (99% in thymus, 96% in liver, 50% in spleen, and 40% in bone marrow; data not shown), in a way reminiscent of the V{alpha}14+ cell proportions, we purposefully compared the Vß and V{alpha} usages of CD62L- and CD62L+ DN NKT cells.

Because the small numbers of thymic and hepatic CD62L+ DN NKT cells hinder analyses of their repertoire, we focused on spleen that contains comparable numbers of CD62L- and CD62L+ as well as V{alpha}14+ and V{alpha}14- DN NKT cells. To obtain a sufficient number of cells, 95% pure splenic CD62L- and CD62L+ DN NKT cells were isolated from three spleens, and the V segment usage of their TCR chains was analyzed semiquantitatively. CD62L- cells displayed a TCR-Vß usage strongly biased toward Vß2, Vß7, Vß8.1, Vß8.2, and Vß8.3 segments (Fig. 4GoA, left) and expressed almost exclusively the invariant V{alpha}14 chain (Fig. 4GoB, left). In contrast, CD62L+ cells had an unbiased Vß usage (Fig. 4GoA, right), and TCR {alpha}-chains distinct from the invariant V{alpha}14 chain (Fig. 4GoB, right). Remarkably, the V{alpha}14 invariant chain with a 10-aa-long CDR3 region is the unique V{alpha}14-C{alpha} rearrangement of CD62L- DN NKT cells, as disclosed by immunoscope profile (Fig. 4GoC, left). The rare V{alpha}14-C{alpha} rearrangements detected in the CD62L+ population are polyclonal because several CDR3 lengths were observed (Fig. 4GoC, right). Therefore, splenic DN NKT cells contain two subgroups: subgroup I cells of CD62L- phenotype use the invariant V{alpha}14 chain associated with Vß2, Vß7, Vß8.1, Vß8.2, and Vß8.3 chains; and subgroup II cells of CD62L+ phenotype express unbiased TCR {alpha}- and ß-chains.



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FIGURE 4. Semiquantitative analyses of the TCR-Vß (A) and TCR-V{alpha} (B) usages of splenic CD62L- (left) and CD62L+ (right) DN NKT cells. x- and y-axes are as in Fig. 2Go. C, Immunoscope V{alpha}14C{alpha} profiles obtained from the latter populations.

 
The proportion of the two subgroups of DN NKT cells varies depending their tissue localization

The respective proportions of V{alpha}14+ and V{alpha}14- cells in thymus, liver, spleen, and bone marrow, are 100:0, 80:20, 50:50, and 20:80, respectively. Thus, we took into account the aforementioned proportions to determine whether the coexistence in different proportions of the two subgroups of DN NKT cells, as defined on the basis of their TCR repertoire, underlies the distinct Vß usages found in the various tissues.

In view of the Vß usage obtained in Fig. 4Go and the assumed relative tissue distribution of the two subgroups, we calculated a TCR-Vß usage for each tissue and compared it with the one experimentally obtained and depicted in Fig. 2Go. Fig. 5Go shows that for each tissue, the calculated TCR-Vß usage of DN NKT cells closely matches the experimental one. It is highly likely, therefore, that thymus contains only subgroup I DN NKT cells whereas liver, spleen, and bone marrow harbor 80:20, 50:50, and 20:80 mixtures of subgroups I and II, respectively. Although all splenic CD62L- DN NKT cells express the invariant V{alpha}14 chain, in liver and bone marrow the proportion of CD62L- DN NKT cells is higher than the V{alpha}14+ cell proportion. Hence, subgroup I cells, as defined on the basis of their TCR components, do not represent all of the CD62L- DN NKT cells in the latter tissues.



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FIGURE 5. Comparison between the DN NKT cell Vß usage observed in Fig. 2Go ({square}) and the one calculated by assuming that the proportion of subgroup I and II cells, with a Vß usage as defined in Fig. 4Go, correspond to those of V{alpha}14+ and V{alpha}14- DN NKT cells (i.e., 100:0, 80:20, 50:50, and 20:80 in thymus, liver, spleen, and bone marrow, respectively) ({blacksquare}).

 
DN NKT cells display a polyclonal TCRß repertoire

We next investigated the polyclonality of DN NKT cell TCRß-chains in individual mice. The standard polyclonality of conventional T cells is reflected into Gaussian-like CDR3 size distributions for every analyzed VßCß or VßJß immunoscope profile. Representative profiles obtained for Vß segments either predominantly used by subgroup I (Vß2 and Vß8.2) or used by subgroup II (Vß5.1 and Vß12) DN NKT cells are shown in Fig. 6Go. In all mice, VßCß combinations displayed a Gaussian-like distribution (Fig. 6Go and data not shown). The analysis of Vß8.2-bearing cells was further refined by measuring the Jß usage (which showed a bias in favor of Jß2.1, Jß2.5, and Jß2.7 in all cases; data not shown). The 12 Vß8.2Jß immunoscope profiles were Gaussian-like as well. Thus, in both subgroups and in all tissues, DN NKT cells were polyclonal. We never detected a clonal expansion that would show a higher CDR3 size peak over the Gaussian polyclonal background.



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FIGURE 6. DN NKT cells exhibit a polyclonal TCRß repertoire. Immunoscope profiles of representative Vß-Cß rearrangements obtained from thymic (a), hepatic (b), splenic (c), and bone marrow-derived (d) DN NKT cells are depicted.

 
DN NKT cells display in each tissue a unique TCRß diversity

It was of interest to determine whether various tissues share identical DN NKT cells. We sequenced a large number of ß-chain rearrangements among the Vß8.2-Jß2.5 combination, most expressed within the V{alpha}14+ subgroup. cDNAs were prepared from thymic, hepatic, splenic, and bone marrow-derived DN NKT cells purified from an individual mouse, and Vß8.2-Jß2.5 PCRs were performed on identical amounts of cDNA, containing 2 x 104 copies of CD3{epsilon} transcripts (about one-tenth of the total cDNA). The resulting PCR products were cloned in Escherichia coli and sequenced until approaching saturation.

From the number of sequences found once, twice, or more, it is possible to extrapolate and calculate the likely number of distinct sequences present in a given sample, known as maximum likelihood estimate (MLE) (29, 30). As shown in Table IIGo, for each sample, >250 sequences were needed to approach a plateau. MLE values in the same range as in Table IIGo were found in DN NKT cells from identical tissues of other mice (data not shown). Because thymic DN NKT cells are a homogeneous population of subgroup I cells, it is possible to provide an estimate of their Vß repertoire size. About 50% of thymic DN NKT cells use the Vß8.2 segment (Ref. 18 and data not shown), and the frequency of Jß2.5 usage among Vß8.2 rearrangements in the latter population, as determined by immunoscope analysis (data not shown), is ~13%. Their Vß repertoire size can thus be calculated as the number of distinct Vß8.2-Jß2.5 sequences (MLE value in Table IIGo) divided by (frequency of Vß segment x frequency of Jß segment). The result of this calculation gives an estimate of 3.2 x 103 distinct TCRß rearrangements for 2 x 105 purified thymic DN NKT cells, each rearrangement being thus shared by 60 thymic DN NKT cells. In comparison, 26–45 naive T splenocytes share a given TCRß rearrangement that can associate with at least two distinct V{alpha} chains (31). Hence, the average size of DN NKT cell clones is close to that of conventional T cells.


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Table II. Diversity of the Vß8.2Jß2.5 rearrangements found in DN NKT cells purified from various tissues of an individual mouse

 
Inspection of individual amino acid sequences revealed that thymic, hepatic, and splenic DN NKT cell populations exhibited the greatest sequence recurrence (i.e., shared sequences), about 9% for thymus with liver or spleen, 7% for liver with thymus or spleen, and 6% for spleen with thymus or liver, whereas their sequence recurrence with bone marrow was 3- to 7-fold less (Table IIGo). This is not unexpected, given the observation that these organs contain the highest proportion of subgroup I cells. Reciprocally, bone marrow, mostly composed of subgroup II cells, showed the greatest recurrence with spleen (Table IIGo) which, in contrast to thymus and liver, also contains a high proportion of subgroup II cells. In all cases, each tissue-derived DN NKT cell population shares only a few of its Vß8.2-Jß2.5 rearrangements with the other populations. Hence, in every tissue, DN NKT cells display a mostly unique Vß8.2-Jß2.5 rearrangement diversity.

Shared nucleotide and amino acid Vß8.2-Jß2.5 sequences in an individual animal between tissue-derived DN NKT cells

Table IIIGo shows that 6 distinct nucleotide sequences were shared between thymus and liver, 9 between thymus and spleen, and 8 between liver and spleen of 151, 182, and 248 distinct sequences in thymus, liver, and spleen, respectively (Table IIGo). None was found between bone marrow (84 distinct sequences, Table IIGo) and thymus, and only one was found between bone marrow and liver or spleen. Translation of CDR3 nucleotide sequences revealed a greater recurrence at the amino acid level (Table IIIGo). Two amino acid sequences, 8- and 9-aa-long CDR3, were common to thymus, liver, and spleen, and several others found in two of the three organs. As for bone marrow, only two and three sequences were common to, respectively, thymus and liver, and seven to the spleen. The amino acid CDR3 sequences that originate from distinct nucleotide sequences are indicated in Table IIIGo. Their relatively high number among recurrent sequences suggests that a selection takes place at the protein level.


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Table III. Shared nucleotide and amino acid Vß8.2Jß2.5 sequences between tissue-derived DN NKT cells of an individual mouse

 
Individual variability of DN NKT cell ß rearrangements between animals

To determine whether identical sequences would be found in other animals, we analyzed thymic and hepatic DN NKT cells from a second mouse, splenic and bone marrow DN NKT cells from a third mouse (data not shown). Eight, 10, 13, and 2 amino acid sequences, mostly encoded by different nucleotide sequences, were recurrent to thymi, livers, spleens, and bone marrows, respectively. Some of them were encoded in a given organ by two distinct nucleotide sequences. These observations show that the Vß8.2-Jß2.5 repertoire of DN NKT cells irrespective of the tissue localization displays a large individual variability, as has already been described for conventional T cells (32).


    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Mouse NKT cells comprise two major subpopulations with thus far not well-defined functions, the CD4+ and the DN NKT cells. The present study investigates the cellular basis of the tissue heterogeneity of the latter subpopulation. To that purpose, we analyzed in detail the TCR repertoire of these cells, using the immunoscope technique, combined with a semiquantitative RT-PCR procedure.

In thymus, liver, spleen, and bone marrow, ~100, 80, 50, and 20% of DN NKT cells expressing the invariant V{alpha}14 chain were, respectively, observed. The skewing in the TCR-Vß usage toward Vß2, Vß7, Vß8.1, Vß8.2, and Vß8.3 segments of each tissue-derived population decreased in proportion to V{alpha}14 expression. The latter correlation was suggestive of the existence of two distinct subgroups, one expressing a TCR biased for both chains and the other expressing an unbiased TCR. Because CD62L- and CD62L+ DN NKT cells segregate in these tissues in proportions reminiscent of the V{alpha}14+ and V{alpha}14- populations, particularly in spleen, the V{alpha} and Vß usages of splenic CD62L- and CD62L+ DN NKT cells were analyzed. CD62L- DN NKT cells were found to express exclusively the invariant V{alpha}14 chain associated with Vß2, Vß7, Vß8.1, Vß8.2, or Vß8.3 chains, whereas CD62L+ cells express TCR {alpha}-chains other than V{alpha}14, associated with unbiased TCR ß-chains. We further demonstrated that subgroup I DN NKT cells, as defined by the expression of a biased TCR repertoire, and subgroup II DN NKT cells, as defined by the expression of an unbiased TCR repertoire, coexist in thymus, liver, spleen, and bone marrow in proportions close to 100:0, 80:20, 50:50, and 20:80, respectively.

The above findings are consistent with several observations reported by other groups : DN NKT cells were recently found to be diminished in J{alpha}281-/- mice by ~90, 75, 40, and 60–80% in thymus, liver, spleen, and bone marrow, respectively (19, 20). In sharp contrast to CD1-/- mice in which DN NKT cells express an unbiased TCR{alpha}ß repertoire, DN NKT cells from J{alpha}281-/- mice express, exclusively in thymus and liver, a TCR{alpha}ß repertoire which is biased toward the single TCR ß-chain (18). These thymic and hepatic cells are therefore likely to be selected by CD1d molecules in J{alpha}281-/- mice, being otherwise not selected in C57BL/6 animals in which they display a TCR repertoire highly skewed for both TCR chains (subgroup I DN NKT cells), as shown in the present work. Hence, thymus and liver of C57BL/6 mice might comprise a percentage of V{alpha}14+ DN NKT cells that is slightly higher than that deduced from residual DN NKT cells of J{alpha}281-/- mice. The overexpression of Vß8.2+ chains and the low expression of non V{alpha}14 TCR {alpha}-chains which were observed on thymic and hepatic DN NKT cells by flow cytometry suggested that the majority of these cells were harboring a TCR repertoire biased for both chains (18), which was confirmed by our data. However, the bias toward Vß8.2+ chain expression simultaneously with an important expression of TCR {alpha}-chains other than V{alpha}14 by splenic and bone marrow DN NKT cells was interpreted as the existence, in these tissues, of cells bearing a TCR repertoire in which only the ß-chain is biased (18). In view of our results, the flow cytometry stainings of Eberl et al. can be reinterpreted as reflecting the tissue-variable mixture of subgroups I and II of DN NKT cells that we identified, rather than the existence of DN NKT cells biased either for both TCR chains, in thymus and liver, or for the single TCR ß-chain, in spleen and bone marrow.

All DN NKT cells display a memory phenotype because they bear high levels of the CD44 molecule. However, Oehen et al. (33) reported that only conventional memory T cells having down-regulated the CD62L molecule display an immediate effector function and suggested that chronic Ag activation is required to maintain CD62L at low levels. It is possible that this correlation also applies to NKT cells because they participate in the very early stages of immune responses (34, 35, 36) and produce high levels of cytokines within few hours after TCR engagement (31, 34, 35, 37, 38). Thus, subgroup I DN NKT cells (V{alpha}14+CD62L-) may be subject to a chronic activation in all tissues. In spleen, all subgroup II cells are CD62L+, hence, likely not chronically stimulated. In liver and bone marrow, DN NKT cells comprise higher numbers of CD62L- than V{alpha}14+ cells, meaning that their CD62L- population has not only subgroup I cells but also subgroup II cells. Therefore, liver and bone marrow environments may deliver stimulatory signals both to subgroup I and subgroup II cells. Furthermore, there is a good relevance between the differential ability of DN NKT cells from various tissues to secrete rapidly cytokines and their phenotype of effector and/or resting memory cells in these tissues (19). Overall, CD62L is differentially expressed by subgroup II cells depending on the tissue, which strongly suggest that the two subgroups may be regulated by distinct sets of ligands. Our work also reveals that CD62L- DN NKT cells are more heterogeneous than their CD4+ counterpart because the latter has been recently demonstrated to exhibit a TCR biased for both chains whatever their tissue localization (18).

CD4+ and DN NKT cells which develop in CD1d-/- mice have been shown to display an unbiased TCR repertoire (18). This observation has led to the hypothesis that CD1d-dependent and -independent NKT cell populations could be distinguished from each other by the expression of a biased and an unbiased TCR repertoire, respectively. However, all tissues comprise about 70% of CD1d-restricted DN NKT cells (18) whereas the two subgroups segregate differently. No strict correlation can be thus established between subgroup I and II DN NKT cells, and CD1d restriction in wild-type mice. In particular, subgroup II DN NKT cells are likely a mixture of CD1d-dependent and -independent cells, in spleen and bone marrow of wild-type mice. Moreover, on immunoscope analysis, the TCR ß-chains expressed by both DN NKT cell subgroups displayed Gaussian-like distributions with respect to the CDR3 length, which is indicative of a considerable DN NKT cell TCRß diversity and of the absence of clonally expanded cells. These observations indicate that a wide range of TCR {alpha}- and ß-chains allow the recognition of CD1d molecules and suggest that homeostasis is maintained, despite the activated phenotype of DN NKT cells but consistent with their being nonaggressive in the mouse, by inhibitory mechanisms of their effector functions (probably involving Ly-49 molecules).

The tissue heterogeneity of the DN NKT cells was further shown by the extensive sequencing of Vß8.2-Jß2.5 rearrangements of thymic, hepatic, splenic, and bone marrow populations purified from an individual mouse, because we found that each tissue-derived population shared only a few nucleotide and amino acid sequences with the others. This observation is consistent with two non-mutually exclusive hypotheses: either a tissue-specific selection of DN NKT cell TCR occurs; or DN NKT cells are subject to continuous fluxes between tissues. Previous work reported that when challenged with distinct CD1d+ cell types, CD1d-restricted NKT cell hybridomas with different TCRs display their own autoreactivity patterns independently of the level of CD1d expression, even when they share same {alpha}-chain and Vß segment (21, 22), and that the reactivity of one of two NKT cell hybrids bearing the V{alpha}14 invariant chain but different Vß-chains requires CD1d trafficking to endosomal compartments (22). Moreover, the composition of hybridoma TCR chains appeared to be critical in the recognition of {alpha}-galactosylceramide (14), a synthetic glycolipid capable of eliciting in vivo and in vitro NKT cell responses (11, 14, 34, 35, 36) and a recent study suggested that oligoclonal expanded NKT cells can discriminate between distinct glycosylphosphatidylinositol Ags (15). These studies, which emphasize on one hand the NKT cell reactivity to endogenous and cell type specific-ligands and on the other hand the role of NKT cell TCR in the recognition of glycolipid Ags, argue in favor of a TCR tissue-specific selection.

Vß8.2Jß2.5 rearrangements are predominantly used by subgroup I cells and consistent with the proportion of this subgroup in the various tissues, the highest occurrence of common sequences was observed among thymic, hepatic, and splenic DN NKT cells. Moreover, it is a very unlikely event to find T cells with identical nucleotide TCRß rearrangement and which developed from different precursors. Therefore, because thymus comprises almost exclusively subgroup I cells, the nucleotide recurrence of the latter populations show that at least some subgroup I DN NKT cells share a common precursor.

The present report thus demonstrate: 1) that DN NKT cells comprise two subgroups of cells: subgroup I, which expresses the invariant V{alpha}14 chain in association with Vß2, Vß7, Vß8.1, Vß8.2, and Vß8.3 chains, and subgroup II, which express other {alpha}-chains paired with unskewed ß-chains; 2) that the proportion of subgroup I and subgroup II DN NKT cells is about 100:0 in thymus, 80:20 in liver, 50:50 in spleen, and 20:80 in bone marrow; 3) that in all tissues, both subgroups are polyclonal; and 4) that DN NKT cells from each tissue express a large individual TCR Vß8.2Jß2.5 sequence diversity.

During the past years, many studies have focused on NKT cell involvement, mainly through their cytokine production, in rejection of tumors (39, 40), autoimmune diseases (41, 42, 43), and infectious processes (15, 44, 45). Bone marrow DN NKT cells have been recently implicated in the IL4-mediated suppression of acute graft vs host disease (46). Another study reports that insulin-dependent diabetes mellitus in nonobese diabetic mice is in part related to a dysfunction of IL12-mediated IFN-{gamma} secretion by TCR-stimulated NKT cells and that cytokine production by TCR-stimulated NKT cells of distinct tissue localization is heterogeneous (42). Because CD4 vs DN NKT cell proportions and subgroup I vs subgroup II DN NKT cell proportions vary depending on the tissue, it will be of interest to determine the cytokines produced by these respective NKT cell subpopulations on TCR engagement and to determine whether all these NKT cell subpopulations are identically implicated in the various immune responses. Lastly, almost complete disappearance of CD4+ NKT cells was observed in liver of LFA-1-deficient mice (47), the residual NKT cells being thus likely of DN phenotype (48). It is intriguing that in the latter, residual NKT cells do not display the Ly-49 phenotype of liver but instead that of splenic wild-type NKT cells. Whether these cells belong to subgroup I and/or subgroup II DN NKT cells is an interesting question to be addressed. Overall, this report and those of others contribute to a better definition of NKT cell subpopulations and thus should help to unravel their respective functions in homeostasis and immunopathology.


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Table 3AA. (continues).

 

    Acknowledgments
 
We thank D. Laouini for intensive discussions; I. Motta, J. Kanellopoulos, and M. Weksler for critical reading of the manuscript; A. Lim for technical advice; S. Dalle for constructing the CD3{epsilon} plasmid; and M.-C. Gendron for the four-color cell sorting.


    Footnotes
 
1 This work was supported by the Institut National pour la Santé et la Recherche Médicale, the "Axe Immunologie des Tumeurs" of La Ligue Nationale Contre le Cancer, and the European Community. I.A. is a recipient of a fellowship from l’Association pour la Recherche sur le Cancer. Back

2 Address correspondence and reprint requests to Dr. Irina Apostolou, Unité de Biologie Moléculaire du Gène, Institut National de la Santé et de la Recherche Médicale Unité 277, and Institut Pasteur, 25 rue du Dr. Roux, 75724 Paris cedex 15, France, Back

3 Abbreviations used in this paper: DN, double negative; CDR3, complementarity-determining region 3; MLE, maximum likelihood estimate; FAM, 6-carboxyfluorescein; int, intermediate. Back

Received for publication November 8, 1999. Accepted for publication June 7, 2000.


    References
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 

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