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*
Department of Medicine, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, and
Institute of Pathology, Case Western Reserve University School of Medicine, Cleveland, OH 44106
| Abstract |
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| Introduction |
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Reliable algorithms are now available for predicting peptide binding to some (1, 2, 7, 8, 9, 10, 11, 12, 13, 14), but not most, murine or human MHC alleles. While such algorithms can predict peptide binding, they cannot predict which of these peptides are actually processed and presented, nor can they predict the relative strengths of the induced peptide-specific responses. Moreover, as T cell immunity to a given Ag is defined as the sum of the individual T cells present in the host responding to each of the antigenic peptides (restricted by the different MHC alleles), measurement of the response to a single peptide, i.e., by tetramer analysis, may not be an adequate reflection of the hosts immune status.
Numerous studies over the last 10 years have built our knowledge of MHC class II determinant hierarchy and recognition by CD4 cells in vivo (4, 6, 15, 16, 17). The progress was facilitated by the fact that exogenous Ag is readily processed for presentation on class II molecules (18, 19) and that the open ends of the peptide binding groove on class II molecules make them insensitive to frame shifts when long test peptides are used (20, 21). In addition, proliferation assays and, more recently, enzyme-linked immunospot (ELISPOT)4 assays, which require relatively few cells and little labor, have facilitated the assessment of CD4 immunity (6, 15, 22, 23). The published studies have clearly shown that frequently only one of several peptides with class II binding properties behaves in an immunodominant fashion, while other peptides are subdominant (they elicit weaker responses than the dominant determinant) or are cryptic (they do not elicit T cell responses) (6, 15, 16, 17). Moreover, these studies have shown that the determinant hierarchy can be dynamic, particularly under conditions of chronic immune pathology. T cell responses to determinants that initially behave as cryptic or subdominant can become increasingly prevalent and then critically contribute to the T cell-mediated inflammatory processes (16, 17). It is important to note that the dominance or crypticity of a given class II-restricted peptide cannot be predicted on the basis of the peptides ability to bind to MHC II molecules. In fact, the peptides exhibiting the strongest MHC binding ability can be the least immunogenic because they can negatively select high avidity T cell precursors with related specificity (24, 25, 26).
In contrast to the determinant hierarchy of CD4 cells, that of CD8 cells has proven to be a major challenge. Typically, CD8 T cell lines have been generated from immune hosts, a process that may favor the outgrowth of clones specific for some determinants over others and, hence, may not reflect the prevalence of CD8 cells specific for the different peptides in vivo (27). The readout system for CD8 immunity has primarily been the cytotoxicity (CTL) assay, which, in contrast to the proliferation assay, is not particularly sensitive, is rather labor intensive, and depends upon large numbers of effector cells (27, 28). Such limitations have impaired systematic studies aimed at establishing the frequency of CD8 memory cells in vivo capable of recognizing the different class I-restricted peptides of an Ag. It is only within the last several years that alternative methodologies have emerged, including MHC: peptide tetramer staining (29), intracytoplasmic cytokine staining (30, 31), and ELISPOT assays (32, 33, 34), that allow direct measurements of single Ag-specific CD8 cells ex vivo. The ELISPOT approach has been particularly useful for characterizing low frequency CD8 cell responses specific for known MHC class I-restricted peptides using freshly isolated material (35, 36, 37). Published studies have been confined to characterization a limited number of such peptides; however, systematic determinant mapping of CD8 responses has not been reported.
The MHC class I-processing machinery predominantly produces peptide epitopes from Ags synthesized within the APC (18, 19). Functional readout systems for the recognition of well-characterized model Ags by CD8 cells have, therefore, previously required that the Ag be introduced into the cytoplasm of the APC by transfection, viral infection, or osmotic shock (27, 35, 38). The standard approach for determinant mapping of class II determinants has involved screening with long peptides (up to 100 residues) followed by analysis of peptide series synthesized with 5- to 10-residue overlaps. These types of experiments have been feasible because the MHC II binding groove is open on both ends (39) so as to allow even long peptides to bind to MHC and to elicit detectable recall T cell immune responses. Analogous experiments aimed at identifying class I determinants have also been somewhat successful in defining determinant hierarchies in selected model systems (27, 40, 41, 42). However, the fact that the MHC class I peptide binding groove is closed on both ends and is thus relatively intolerant to frame shifts (43, 44) raises questions as to whether such screening approaches, using panels of peptides with 5- to 10-residue overlaps, might inadvertently miss relevant determinants. Theoretically, comprehensive class I determinant mapping requires the use of peptides of a length that can directly bind to the class I molecule, 810 aa (2, 3, 8), and that cover the molecule in steps of single amino acids (to bypass the intolerance to frame shifts). Even for short protein Ags, this approach would require up to hundreds of different peptides to be tested simultaneously with freshly isolated cells obtained from a single individual, a task that is not easily accomplished with CTL assays, tetramer technology, or intracytoplasmic cytokine staining.
In the present studies we used the ELISPOT approach to demonstrate the feasibility of such comprehensive measurements of class I determinant recognition in freshly isolated CD8 cells. This approach should promote the understanding of CD8 cell immunity in a variety of highly defined murine models and should facilitate the assessment of CD8 cell immunity in humans.
| Materials and Methods |
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Male and female C57BL/6 (B6, H-2b),
C57BL/6J-TgR(ROSA26)26 (ß-gal tg, H-2b),
and C57BL/6-Ifngtm1Ts (B6
IFN-
-/-H-2b)
animals, aged 68 wk, were purchased from The Jackson Laboratory (Bar
Harbor, ME) and maintained in the specific pathogen-free animal
facility at the Louis Stokes Cleveland Department of Veterans Affairs
Medical Center. All the transgenic and knockout mice were backcrossed
for >10 generations onto the B6 background.
Peptides
Peptides ß-gal96103 (DAPIYTNV) and H-Ypb (WMHHNMDLI) were synthesized by Research Genetics (Huntsville, AL). ß-Gal106114 (PITVNPPFV), ß-gal139147 (TRIIFDGVN), and ß-gal178186 (RAGENRLAN) were synthesized by Princeton Biomolecules (Columbus, OH). All these peptides were purified by HPLC to >98% purity. The single-step overlapping 9-mer peptides from the ß-gal region 93187 were synthesized using the Multipin Peptide Synthesis System from Chiron Technologies (Raleigh, NC) and ranged in purity from 70 to 85%.
Immunizations
ß-Gal peptides were mixed with CFA (Life Technologies, Grand Island, NY) at a final concentration of 0.5 mg/ml, and 100 µl was injected s.c. into the flanks of the recipient mice. Intravenous tolerance was induced by single injections of 1 mg of peptide into the tail vein.
Placement and evaluation of skin grafts
Full-thickness trunk skin allografts were placed using standard techniques (45, 46). Skin was harvested from killed donor mice, cut into 0.5-cm2 pieces, and placed in sterile PBS until used for transplantation (<30 min). Recipient mice were anesthetized with pentobarbital (50 µg/g body weight) and shaved around the chest and abdomen. The skin graft was placed in a slightly larger graft bed prepared over the chest of the recipient and secured using Vaseline gauze and a bandage. Bandages were removed on day 7, and the grafts were then visually scored daily for evidence of rejection. The graft was considered fully rejected when it was >90% necrotic. In selected animals, allograft rejection was confirmed by histologic analysis.
T cell subset isolation
Splenic and lymph node CD8+ T cells were isolated using commercially available murine T cell isolation columns from R&D Systems (Minneapolis, MN) following the instructions supplied by the manufacturer. Resultant cells were washed in HBSS medium, counted by trypan blue exclusion, and resuspended at appropriate concentrations for use in the various assays. The purified T cell subpopulation was shown to be >92% CD8+ by flow cytometry.
ELISPOT assays
ELISPOT plates (ImmunoSpot P200, Cellular Technologies,
Cleveland, OH) were coated with capture Abs diluted in PBS and then
blocked for 1 h with sterile PBS/1% BSA and washed with sterile
PBS (32, 33, 34, 45, 46). R46A2, produced and isolated in our
laboratory from a hybridoma, was used at 4 µg/ml for IFN-
.
Anti-IL-2 capture Ab (3 µg/ml; JES6-1A12, PharMingen, La Jolla, CA)
was used for IL-2. 11B11 was produced and isolated in our laboratory
from a hybridoma and was used at 2 µg/ml for IL-4. Anti-IL-5 capture
Ab (5 µg/ml; TRFK4, PharMingen, La Jolla, CA) was used for IL-5.
Various dilutions of purified CD8+ T cells
(0.220 x 105/ml) in 200 µl of HL-1
medium (BioWhittaker, Walkersville, MD) were placed in each well with
or without peptide plus spleen cell stimulators as APCs (in duplicate)
and incubated at 37°C for 24 h in 5% CO2.
After washing with PBS followed by PBS/0.025% Tween, detection Abs
were added overnight. Biotin rat anti-mouse (XMG1.2, PharMingen,
San Diego, CA; 4 µg/ml) was used for IFN-
, rat anti-mouse
IL-2-biotin (2 µg/ml; JES6-5H4, PharMingen) was used for IL-2, rat
anti-mouse IL-4-biotin (2 µg/ml; BVD4-1D11, PharMingen), and rat
anti-mouse IL-5 (4 µg/ml TRFK5, PharMingen) was used for IL-5.
Third reagents were added for 2 h at room temperature. Alkaline
phosphatase-conjugated anti-biotin Ab (Vector, Burlingame CA) was
used for IFN-
and IL-5, and streptavidin-HRP (Dako, Carpenteria, CA;
1/2000 in PBS/0.025% Tween) was used for IL-2 and IL-4. The IFN-
and IL-5 plates were developed using a nitro blue tetrazolium chloride
(Bio-Rad Laboratories, Hercules, CA) and 5-bromo-4-chloro-3-indolyl
phosphate (Sigma, St. Louis, MO) substrate. Sixty-six microliters of 60
mM nitro blue tetrazolium chloride in 70% dimethylformamide (DMF) plus
33 µl of 250 mM 5-bromo-4-chloro-3-indolyl phosphate in 100% DMF
were dissolved in 10 ml of 0.1 M Trizma base, 0.1 M NaCl, and 0.1 M
MgCl2 (pH 9.5); 200 µl of this mixture was
placed in each ELISPOT well. The IL-2 and IL-4 spots were developed
using 800 µl of 3-amino-9-ethylcarbazole (Pierce, Rockford, IL; 10 mg
dissolved in 1 ml of DMF) mixed in 24 ml of 0.1 M sodium acetate, pH
5.0, plus 12 µl H202 (200
µl/well). The resulting spots were counted on a computer-assisted
ELISPOT image analyzer (ImmunoSpot Series I Analyzer, Cellular
Technologies, Cleveland, OH), which is designed to detect ELISPOTs
based on size, shape, and colorimetric density (32, 33, 34, 45, 46).
| Results and Discussion |
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To study CD8 cell recognition of MHC class I-restricted determinants, we used a transplant model in which skin grafts from ß-gal tg mice on the C57BL/6 (B6) background (H-2b) were placed onto wild-type B6 recipients. In this model system, ß-gal serves as the sole minor transplantation Ag and causes rejection within 25 days after placement of the graft (46). The transgene is expressed under a ubiquitin promotor (47), leading to synthesis of a nonsecreted protein in the cytoplasm of donor skin cells and resulting in MHC class I-restricted and class II-restricted presentation of ß-gal-derived peptides (46). While both CD4 and CD8 cells seem to contribute to the rejection process, the CD8 compartment is essential, since B6 congenic CD8 knockout mice show greatly impaired and delayed rejection of B6 ß-gal tg skin (46). Thus, in the system used, a defined model Ag is not only expressed such that it can give rise to an Ag-specific class I-restricted CD8 cell response; in addition, the functional consequences of the induced CD8 response can be studied by rejection of the graft. The immune response was induced by the transplantation process itself, and purified CD8 cells were then tested for recognition of ß-gal-derived peptides when rejection was complete (days 2530).
We synthesized a panel of 86 peptides spanning a segment of ß-gal,
93187, previously implicated as containing immunodominant
determinant(s) (46). The peptides were synthesized at 9 aa
in length such that they could directly bind extracellularly to the MHC
molecule when added as soluble peptides (without the requirement for
further Ag processing). The 9-mer peptides spanned the protein sequence
in steps of single amino acids (Fig. 1
),
and each peptide was then tested individually. This approach made the
ex vivo readout system independent of Ag processing because every
conceivable nonamer determinant was made available for MHC I binding
and, hence, for recognition by the in vivo primed CD8 cells. If primed
CD8 cells reactive to a given peptide were present in the host, they
were stimulated in the recall assay.
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or other effector
cytokines upon initial Ag encounter, but acquire this ability through
Ag-driven differentiation in vivo (34, 48). CD8 cells can
differentiate into either TC1 cells, which are programmed to produce
IFN-
and are cytolytic, or TC2 cells, which are programmed to
secrete type 2 cytokines (IL-4, IL-5) and whose ability to kill is
controversial (49, 50). We measured IFN-
, IL-2, IL-4,
and IL-5 production to account for these different types of CD8 cell
responses. Freshly isolated splenic CD8 cells were tested for
peptide-induced cytokine production over 24 h, an interval too
short for in vitro cytokine differentiation or cellular proliferation
to occur (34, 51). The recall Ag-induced ELISPOTs reflect
cognate cytokine production by individual Ag-stimulated T cells;
therefore, the number of peptide-induced ELISPOTs reflected the number
of the peptide-reactive T cells present in the test cell population
that were preprogrammed in vivo to secrete the cytokine upon Ag
challenge. The assay was performed with purified CD8 cells to ascertain
the cellular source of cytokine production. For IFN-
measurements,
the cytokine that dominated this TC1 recall response (46),
spleen cell APCs were obtained from naive, congenic, IFN-
knockout
mice to further assure that only cognate, CD8 cell-derived IFN-
was
measured. Single-determinant dominance of ß-gal recognition in CD8 cells
When we tested CD8 cells from mice that rejected ß-gal tg skin
grafts for peptide-induced IFN-
production, we found that of the 86
simultaneously tested peptides, two adjacent peptides induced cytokine
production (ß-gal95103 and ß -gal96104; Fig. 2
) with a
stimulation index of
200 (212 spots/million for
ß-gal95103 vs less than two spots in medium
alone or with the other ß-gal peptides). Naive B6 mice did not
respond to the peptides or to ß-gal tg spleen cells (not shown).
These data suggest that the peptides 95103 and 96104 have induced
clonal sizes of IFN-
-producing memory cells at least 200 times
larger than any of the other tested ß-gal peptides. The frequency of
CD8 cells responding to intact ß-gal tg spleen cells (
150/million;
Fig. 2
) was similar to the frequency of CD8 cells responding to the
peptides 95103 and 96104. This clearly identifies the 96103
region as immune dominant, encompassing the overwhelming majority of
the ß-gal-reactive CD8 cells. Consistent with our previously reported
studies documenting that the recall response following ß-gal tg skin
graft rejection is TC1 dominated (46), IL-5 ELISPOT
production was not detectable over background (less than five spots per
well) for the same peptide series (not shown). These results were
invariably seen in five individual experiments using the entire peptide
set. While we readily detected IFN-
producers specific for this
region using our ELISPOT approach, we were not able to detect cytolytic
activity toward any individual peptide determinant using standard ex
vivo CTL experiments. We attribute this to the low frequency of
peptide-reactive cells (Fig. 2
), in the range of 200/million, which is
below the known sensitivity of CTL assays (28). In
confirmation of our findings, previously published studies by others,
using an entirely different model system, demonstrated the
immunogenicity of ß-gal96103
(52). Our comprehensive analysis additionally shows,
however, that ß-gal96103 is not only
immunogenic but also immune dominant; no other determinants within the
tested region induced a detectable response.
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production without IL-2, IL-4, or
IL-5 production, was noted over a 6-log-fold concentration of the
peptide in the recall assay (0.001100 µg/ml; not shown). No
cytokine production in response to this peptide was detectable in
unprimed mice or in mice that rejected fully MHC disparate skin grafts
(not shown).
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The binding motifs for both the Kb and the
Db MHC molecules are shown in Table I
. The peptide
ß-gal96103 fits the Kb
motif in that it has the required anchor residues at the 5 and 8
positions, but is not fully compatible with the motif in that the
peptide lacks the tyrosine residue in position 3 (Table I
). We searched
the amino acid sequence of ß-gal93187 for
other peptides that fit either of the Kb or the
Db motif, both manually and with two epitope
binding motif search programs available on the internet
(14). In addition to ß-gal96103,
three other candidate peptides were identified (Table I
). One of these,
ß-gal139147, manually fit the
Kb motif equally well as 96103 did, using
acceptable anchor residues at positions 5 and 8. These two determinants
(96103 and 139147) had the highest scores for binding to
Kb based on one of the epitope search programs
(14). Two other peptides (106114 and 178186) generally
fit the Db motif, having appropriate anchor
residues at positions 4 and 5. While these latter two peptides did not
fully fit the Db motif, in that they lacked the
usual binding residues at several other positions (Table I
), they both
came up as strong potential Db binders using one
epitope search program (14). In fact, peptide 178186 had
the highest binding score of all peptides in the region studied.
Interestingly, the second search program (53) yielded
somewhat different results; while peptides 96103 and 178186 were
predicted to be good binders to Kb and
Db, respectively, 139147 and 106114 were
ranked much lower. As shown above (Fig. 2
), CD8 cell memory to any of
these three alternative peptides
(ß-gal106114,
ß-gal139147,
ß-gal178186) was not detected with the
peptide scan screening approach. With different well-established
algorithms giving different results, and in face of recent studies that
suggest that binding affinity does not suffice to predict actual immune
dominance (54), the data underline the need for performing
comprehensive mapping analyses.
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, IL-2, IL-4, or IL-5 response
over background (Fig. 3
The rules of determinant hierarchy may vary with conditions of
induction of the immune response (15, 16). We therefore
tested whether these four peptides, all generally fitting the canonical
motifs, would elicit immune responses when injected individually with
CFA. Only ß-gal96103 was immunogenic,
inducing a vigorous IFN-
+
(IL-2-, IL-4-,
IL-5-) recall response (Fig. 4
). The CD8 memory cells induced by
immunization with the peptide could also be activated by spleen cells
obtained from ß-gal tg mice. Moreover, the frequencies of the
IFN-
-producing CD8 T cells were essentially identical whether the
recall response was elicited by the peptide or by the ß-gal tg cells
(Fig. 4
). The findings demonstrate that
ß-gal96103 is naturally processed and
presented, thus formally defining it as an immune dominant determinant
(6, 15, 16).
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Induction of tolerance to 96103 prolongs ß-gal tg skin graft survival
To verify independently the central role of 96103 in CD8 cell
recognition of ß-gal, we induced tolerance by i.v. injection of a
high dose (1 mg) of soluble peptide before placement of skin grafts. As
shown in Fig. 5
, injection of
ß-gal96103 more than doubled the time to
rejection compared with that in untreated control animals, a
statistically (p < 0.05) and biologically
highly significant result. In contrast, preinjection of peptide
ß-gal106114 did not affect the rejection
(Fig. 5
A). To control for peptide specificity, we
preinjected recipient mice with a peptide that fits the
Db binding motif (H-Ypb,
Table I
) and whose immune dominance is well established
(55). Pretreatment with this peptide
(H-Ypb) did not affect the kinetics of ß-gal tg
skin graft rejection (Fig. 5
A), but did prolong survival of
B6 male skin on Db-expressing female recipients
(33.5 days for H-Ypb-injected vs 17.5 days for
control mice; n = 4/group; data not shown). As a
further specificity control, i.v. injection of
ß-gal96103 had no effect on the survival of
third-party minor Ag-disparate skin grafts: H-Y-expressing male B6 skin
grafts on female B6 recipients (Fig. 5
B). Syngeneic female
B6 skin grafts were not rejected (graft survival, >40 days;
n = 3; not shown)
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IL-2, IL-4, or IL-5 were not detectable (not shown). This
confirmed that the i.v. injection tolerized the CD8 T cells specific
for ß-gal96103 and further showed that these
T cells did not recover from the tolerant state and were not
replenished from the thymus to mediate graft rejection. Moreover,
systematic determinant mapping studies of the 93187 region using CD8
and CD4 T cells did not reveal emergence of responses to any of the
peptides over background. Within the region studied, therefore, there
was no shifting of determinant recognition to compensate for the loss
of the immune dominant response. In particular, when we looked for
responses to the three additional candidate peptides, again titrating
those peptides across a 6-log concentration, we did not detect any
cytokine production (not shown). The data clearly show that
ß-gal96103 is a key determinant in the early
CD8 cell-mediated rejection of ß-gal tg grafts. To account for the late rejection, one would have to postulate that other CD8 responses outside of the region that we studied progressively gained prevalence so as to result ultimately in a rejection phenotype (i.e., determinant spreading), a finding that has frequently been observed for CD4 cell responses in other model systems (6, 15, 16, 17, 56). Alternatively, it is conceivable that the delayed rejection was driven by ß-gal-reactive CD4 cells. The emergence of CD4-mediated rejection in animals tolerized to ß-gal96103 is supported by experiments in which congenic B6 CD8-/- mice (more than eight backcrosses to B6) rejected B6 ß-gal tg skin (38.8 days; n = 4) with a >2-wk delay compared with wild-type B6 recipients (21 days; n = 4). Moreover, we have previously published studies demonstrating ß-gal-specific delayed-type hypersensitivity, a predominantly CD4-mediated effector function, in animals undergoing rejection (46). Regardless of the final effector mechanisms that resulted in graft rejection, induction of tolerance to ß-gal96103 changed the peptide determinant hierarchy. More extensive utilization of this systematic determinant mapping approach should permit further progress in understanding the dynamics of determinant utilization following tolerization.
Concluding remarks
Using ß-gal as a model Ag and skin transplantation as a method for priming CD8 cell immunity, we have demonstrated the feasibility of large-scale, class I determinant mapping directly ex vivo. While a motif search predicted four candidate peptides, we found that only one of these peptides, ß-gal96103, actually functioned as a target of the CD8 cell attack. The immune dominance of this determinant was defined using functional recall assays and was verified by in vivo tolerization experiments resulting in prolonged allograft survival. While none of the peptides exactly fit the known MHC I binding motifs, our data confirm that such motifs (when known) can be useful starting points for narrowing down candidate peptides. More importantly, however, the technical advancement reported here should allow the complete assessment of CD8 cell repertoire specific for any Ag and restricted by any MHC class I allele, including those murine and human MHC I alleles for which binding motifs are not well characterized. Particularly for humans, in whom the essentially infinite numbers of class I allelic combinations have been an obstacle to the rational assessment of CD8 cell function, such systematic mapping should facilitate the understanding of CD8 cell immunity during infection, autoimmune disease, cancer, and transplant rejection and may aid in designing specific immunotherapies and vaccines.
| Acknowledgments |
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| Footnotes |
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2 P.S.H., A.V., and P.V.L. contributed equally to this work. ![]()
3 Address correspondence and reprint requests to Dr. Paul Lehmann, Institute of Pathology, 929 Biomedical Research Building, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106-4943. ![]()
4 Abbreviations used in this paper: ELISPOT, enzyme-linked immunospot; ß-gal, ß-galactosidase; tg, transgenic; DMF, dimethylformamide. ![]()
Received for publication December 3, 1999. Accepted for publication May 16, 2000.
| References |
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-producing lymphocytes is a manifestation of immunologic memory and correlates with the risk of posttransplant rejection episodes. J. Immunol. 163:2267.This article has been cited by other articles:
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