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The Journal of Immunology, 2000, 165: 493-498.
Copyright © 2000 by The American Association of Immunologists

Ribozymes as Tools for Therapeutic Target Validation in Arthritis

Thale C. Jarvis1,{ddagger}, Karyn S. Bouhana*, Mark E. Lesch{dagger}, Suzy A. Brown{ddagger}, Tom J. Parry*, Denis J. Schrier{dagger}, Stephen W. Hunt, III{dagger}, Pamela A. Pavco* and Craig M. Flory{dagger}

* Ribozyme Pharmaceuticals, Boulder, CO 80301; {dagger} Parke-Davis Pharmaceutical Research, Division of Warner-Lambert Company, Ann Arbor, MI 48105; and {ddagger} Atugen USA, Boulder, CO 80301


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
In this paper we describe a method for validating therapeutic gene targets in arthritic disease. Ribozymes are catalytic oligonucleotides capable of highly sequence-specific cleavage of RNA. We designed ribozymes that cleave the mRNA encoding stromelysin, a matrix metalloproteinase implicated in cartilage catabolism. Ribozymes were initially screened in cultured fibroblasts to identify sites in the mRNA that were accessible for binding and cleavage. Accessible sites for ribozyme binding were found in various regions of the mRNA, including the 5' untranslated region, the coding region, and the 3' untranslated region. Several ribozymes that mediated sequence-specific and dose-dependent inhibition of stromelysin expression were characterized. Site selection in cell culture was predictive of in vivo bioactivity. An assay for measuring cartilage catabolism in rabbit articular cartilage explants was developed. Ribozymes inhibited IL-1-stimulated stromelysin mRNA expression in articular cartilage explants, yet failed to inhibit proteoglycan degradation. This indicated that up-regulation of stromelysin was not essential for IL-1-induced cartilage catabolism. Broad applications of this approach in therapeutic target validation are discussed.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
A key factor in arthritic disease progression is the excessive degradation of articular cartilage leading to loss of joint function (1). In the past, considerable attention has been focused on the role of particular matrix metalloproteinases (MMPs),2 which are overexpressed in diseased joints relative to normal joints (2). In particular, stromelysin-1 expression is highly elevated in osteoarthritis and rheumatoid arthritis patients and has been the focus of extensive drug discovery efforts (3, 4). Of course, expression levels alone do not necessarily define cause vs effect. Knowledge of which factors actually play a causative role in cartilage degradation would provide a powerful advantage in arthritis drug discovery.

Ribozymes are catalytic oligonucleotides that bind and cleave specific RNA sequences (5). Numerous ribozyme motifs have been found in nature, and additional catalytic motifs have been identified via in vitro selection (6, 7). The hammerhead ribozyme motif can be engineered to cleave an RNA substrate in trans, making it a useful tool for selective inhibition of specific mRNAs (6, 8). The hammerhead is also the smallest naturally occurring ribozyme motif, thereby making it particularly amenable to chemical synthesis.

Synthetic hammerhead ribozymes have been reported to modify target mRNA levels and/or alter cellular phenotype in a number of mammalian cell culture systems (9, 10, 11, 12). Beigelman et al. (13) have shown that appropriate nucleotide modifications of chemically synthesized hammerhead ribozymes result in highly nuclease-resistant molecules that retain catalytic activity. These and other modifications have been shown to be efficacious in cell culture (10) and in vivo (14, 15, 24, 25).

In this paper, we describe a systematic method for identifying efficacious ribozymes against stromelysin-1 (MMP-3) using a rapid cell culture screen to identify accessible sites for ribozyme binding and cleavage. We show that ribozyme site selection in cell culture is predictive of activity in a rabbit knee model of arthritis. Using rabbit articular cartilage explants, we show that ribozymes are readily taken up by chondrocytes and mediate inhibition of IL-1-induced stromelysin expression. The complete lack of concomitant inhibition of cartilage catabolism indicates that stromelysin is not a major contributor to cartilage degradation in this model. Based on this analysis, specific stromelysin inhibitors may not be optimal therapeutics in inflammatory arthritis. The potential for broad applications of this technique in therapeutic target validation are discussed.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Ribozyme synthesis

Ribozymes were synthesized and purified as described by Wincott et al. (16). Sequences and modifications were as described by Flory et al. (14). Site numbers indicate the position of cleavage based on the human sequence (GenBank accession no. X05232). The 5'-untranslated region (UTR) extends from 1 to 43, the coding region from 44 to 1477 and the 3'-UTR from 1478 to 1801.

Cell culture assays

HS-27 human foreskin fibroblasts were obtained from American Type Culture Collection (Manassas, VA) and were cultured in DMEM (BioWhittaker, Walkersville, MD) supplemented with 10% FBS (HyClone, Logan, UT). Cell assays were performed between passages 19 and 30. Ribozyme uptake was enhanced by complexing with LipofectAMINE (Life Technologies, Rockville, MD) as described previously (10). Cells were seeded in 24-well tissue culture plates at 50,000 cells/well. After 24 h, cells were washed two times with Dulbecco’s phosphate-buffered saline (DPBS)+ and were treated with ribozymes complexed with LipofectAMINE in serum-free DMEM. After 3 h, ribozyme/lipid complexes were removed, and 1 ml DMEM plus 10% FBS and 50 U IL-1 (IL-1{alpha}; Genzyme, Cambridge, MA) was added to each well. IL-1 stimulation resulted in a 5- to 10-fold increase in stromelysin expression. Time course studies showed that stromelysin mRNA expression reached maximal levels at 12 h after IL-1 stimulation and that secreted stromelysin protein reached maximal levels at 18 h after IL-1 stimulation (data not shown). IL-6 secretion was strongly induced after IL-1 stimulation. Supernatants were harvested at 18 h after IL-1 stimulation and stored at -70°C before ELISA analysis. Human synovial fibroblasts derived from arthritis patients undergoing joint replacement surgery were obtained from Dr. V. Baragi (Parke-Davis Pharmaceuticals) and were assayed as described for HS-27 cells.

Stromelysin and IL-6 ELISA

Stromelysin protein levels were quantified by sandwich ELISA. A mAb II4D IIB-specific for human stromelysin was obtained from Drs. L. Jack Windsor and Jeffrey Engler (University of Alabama, Tuscaloosa, AL). Unless otherwise indicated, the buffer used was DPBS, 0.1% BSA, 0.05% Tween 20, and all incubations were conducted at 37°C for 1 h with four 200-µl washes between steps. 1) Immulon I plates (Dynatech Laboratories, Chantilly, VA) were coated with 100 µl of 1 µg/ml IID4 mAb (capture Ab) in 100 mM Na-carbonate buffer (pH 9.0) overnight at 4°C. 2) Wells were blocked with DPBS, 1.0% BSA. 3) One hundred microliters of sample or standards diluted in DPBS/0.1% BSA was added to the coated wells. 4) One hundred microliters of a 1/500 dilution of rabbit anti-human stromelysin Ab (Biogenesis, Bournemouth, U.K.; #5980-0307) was added to the wells. 5) One hundred microliters of a 1/500 dilution of goat anti-rabbit IgG (H+L)-AP (The Jackson Laboratory, Bar Harbor, ME) was added. 6) One hundred microliters of 1 mg/ml p-nitrophenyl phosphate in 100 mM diethanolamine (pH 9.5), 5 mM MgCl2 was added. Absorbance was read at 405 nm. Purified human stromelysin protein was used as a standard and was a gift from Dr. V. Baragi. Purified IL-6 protein was obtained from R&D Systems (Minneapolis, MN). The threshold of sensitivity was <= 4.0 ng/ml human stromelysin. IL-6 protein levels were quantified by sandwich ELISA. The protocol was identical with that of the stromelysin sandwich ELISA, with the following modifications: all incubations were conducted at room temperature for 1 h, the capture Ab from step 1 was anti-IL-6 mAb (R&D Systems, #MAB206), the detecting Ab from step 4 was 2 µg/ml of goat anti-IL-6 polyclonal Ab (R&D Systems, #AB-206-NA), and the secondary Ab from step 5 was donkey anti-goat IgG (H+L)-AP (The Jackson Laboratory, #705-055-147). The threshold of sensitivity was <= 0.10 ng/ml IL-6.

Articular cartilage explants

Cartilage from the tibeal plateau or femoral groove of the knee joint of white New Zealand rabbits (either sex, 10–12 wk old, 2–2.5 kg) was harvested and immediately washed two times in ice-cold DPBS+ plus 100 µg/ml streptomycin and 100 U/ml penicillin (BioWhittaker, Walkersville, MD), and 2.5 µg/ml Fungizone (Irvine Scientific, Santa Ana, CA). Tissue pieces were sliced into ~5- to 15-mg pieces and cultured in 96-well tissue culture plates at 37°C in 5% CO2 atmosphere in 100 µl of DMEM supplemented with 2% FBS, 100 µg/ml Strep, 100 U/ml penicillin, and 2.5 µg/ml fungizone and ribozyme. The process of harvesting the cartilage tissue resulted in significant catabolic activity that was measurable in the absence of IL-1 stimulation, presumably due to secretion of proteases in response to trauma. The contribution of this basal catabolic activity could be minimized by culturing for 24 h before aspiration of the culture medium, washing with PBS, and replacing with fresh culture medium. Thus for proteoglycan assays, culture medium was removed 24 h after harvest, explants were washed two times with DPBS+, and fresh medium supplemented with FBS, ribozyme, and 50 U/ml IL-1{alpha} was added and incubated for varying periods. Proteoglycan degradation in cartilage was measured by determining the amount of proteoglycan released into the culture medium relative to the amount remaining in the cartilage. Proteoglycan levels were measured using a spectrophotometric assay with dimethylmethylene blue (Aldrich Chemical, Milwaukee, WI) measured at 540 nm using shark chondroitin sulfate (Sigma, St. Louis, MO) as a standard (17).

For uptake studies, ribozyme was conjugated with carboxymethylrhodamine via an aminolinker modification in the stem II loop. The 3.5-mole equivalents of 5-(and-6)-carboxytetramethylrhodamine (5(6)-TAMRA), succinimidyl ester (Molecular Probes, Eugene, OR) dissolved in DMSO were allowed to react overnight at room temperature with ribozyme dissolved in an equal volume of 0.2 M HEPES buffer (pH 8.0). The ribozyme was then ethanol precipitated, resuspended in sterile water, and purified by size exclusion chromatography using PD-10 cartridges (Pharmacia, Piscataway, NJ) according to the manufacturer’s recommendations. The purity of the resulting TAMRA-labeled ribozyme was estimated by polyacrylamide gel electrophoresis to be greater than 90% compared with unlabeled ribozyme. There was no detectable free TAMRA. Ribozyme uptake by articular tissues in vivo was determined by injecting 100 µg labeled ribozyme into the intraarticular space. After 24 h, synovium and articular cartilage was harvested, placed in PolyFreeze (Polysciences, Warrington, PA), and frozen in liquid nitrogen. For the explant studies, articular cartilage was harvested and cultured as described above, and then labeled ribozyme was added to a final concentration of 1 µM for the indicated times. After the incubation, the cartilage fragments were washed in saline, embedded in PolyFreeze, and snap frozen in liquid nitrogen. Twelve-micrometer frozen sections were prepared on a freezing microtome and then photographed on a Leica microscope equipped with epifluorescence.

RNA extraction from articular cartilage explants

Total cartilage from each rabbit knee was homogenized in 5 ml Trizol (Life Technologies; phenol and guanidine isothiocyanate) for 60 s. Samples were incubated at 22°C for 30 min, and then 1 ml chloroform was added, samples were shaken vigorously for 15 s and centrifuged at 4500 x g for 20 min at 4°C, and the aqueous phase was removed to a fresh tube. Phenol:chloroform:isoamyl alcohol (25:24:1) was added (2.25 ml), the samples were centrifuged at 12,000 x g for 12 min at 4°C, and the aqueous phase was removed to a fresh tube. Isopropanol was added (2.5 ml), and samples were placed at -20°C for 1–24 h. Samples were then centrifuged at 12,000 x g for 12 min at 4°C, the supernatant was removed, pellets were washed with 75% EtOH and recentrifuged, the supernatant was removed, and the pellets were air dried. Stromelysin RNA levels were measured by Northern analysis as described (14).

Statistical methods

Statistical analysis was performed using JMP software version 3.1 (SAS Institute, Cary, NC). The cartilage explant data were analyzed by first verifying that they were normally distributed before a one-way ANOVA. Group means were then compared using either Dunnett’s (against control, {alpha} = 0.05) or Tukey-Kramer (against each other, {alpha} = 0.05) post hoc tests as indicated in figures.


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Site selection in cultured human fibroblasts

The hammerhead ribozyme consensus sequence occurs frequently in a typical mRNA, but only a limited number of sites are expected to be accessible to intracellular ribozyme binding, owing to RNA secondary structure and protein binding. Thus, we elected an empirical approach to assess the relative cleavage activity of stromelysin ribozymes targeting a panel of hammerhead cleavage sites. The panel was chosen based on homology between human and rabbit stromelysin mRNA sequences and on the predicted propensity of the ribozyme to fold into a catalytically active conformation (18). Ribozymes targeting 24 cleavage sites in human stromelysin mRNA, including sites in the coding and UTRs, were synthesized using nucleotide modifications that confer resistance to nucleolytic degradation (13). All of the ribozymes showed catalytic cleavage activity against a matched substrate in test tube cleavage assays (data not shown). The ribozyme panel was tested for inhibition of stromelysin protein secretion in IL-1-stimulated HS-27 human foreskin fibroblasts (data not shown). Based on this analysis, ribozymes targeting the most accessible sites were selected for further study.

Mechanism of inhibition, specificity, and dose dependence

Active ribozymes were tested in parallel with inactive controls containing identical binding arms but with mutations in the catalytic core known to impair cleavage activity. As seen in Fig. 1GoA, active ribozymes targeting sites 21, 1049, 1363, 1366, and 1489 showed inhibition of stromelysin secretion relative to their inactive controls, demonstrating that the inhibition was mediated by ribozyme cleavage. Inhibition by the ribozyme targeting site 1410 was not statistically different from control stromelysin levels. The ribozyme targeting site 883 was ineffective in the initial screens, probably due to lack of binding site accessibility, and was included here as a negative control. In addition, ribozymes targeting human sites 463 and 1403 also showed efficacy in cell culture relative to their respective inactive controls (data not shown). These ribozymes were not pursued due to lack of homology with rabbit stromelysin. Interestingly, efficacious ribozymes were identified at sites within the 5'-UTR (site 21), the coding region (sites 463, 1049, 1363, 1366, and 1403), and the 3'-UTR (site 1489).



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FIGURE 1. Ribozymes were delivered to HS-27 cells at a total concentration of 300 nM complexed with 16.6 µg/ml LipofectAMINE. Secreted protein levels in the supernatant were measured by ELISA. Protein levels are expressed relative to the IL-1-stimulated control level. Error bars represent the range of duplicate measurements. A, Secreted stromelysin protein levels. B, Secreted IL-6 protein levels.

 
IL-1-induced IL-6 secretion was measured as an additional control for specificity to ensure that active ribozymes were not simply causing inhibition of secretion or general cytotoxicity. At this dose, there was little effect of the ribozyme treatment on IL-6 induction and no statistical difference between active vs inactive ribozymes (Fig. 1GoB). Thus, the ribozyme effect appears to be specific for stromelysin expression.

The ribozyme targeting site 1366 was further tested in dose-response experiments. As shown in Fig. 2Go, the active ribozyme inhibited stromelysin expression in a dose-dependent manner, with an IC50 of ~240 nM. Again, the inactive control did not inhibit stromelysin expression, indicating that the inhibition was mediated by ribozyme cleavage of the target RNA. This ribozyme was also tested against three isolates of human synovial fibroblasts obtained from osteoarthritis patients undergoing joint replacement surgery and showed an IC50 ranging from 250 to 400 nM (data not shown). Stromelysin RNA levels in IL-1-stimulated human synovial fibroblasts treated with ribozyme were measured using an RNase protection assay, and a good correlation was observed between the level inhibition at the protein and RNA level (data not shown).



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FIGURE 2. Varying doses of active and inactive ribozymes targeting site 1366 were delivered to HS-27 complexed with LipofectAMINE at a constant charge ratio (18 µg/ml LipofectAMINE plus 325 nM ribozyme, and dilutions thereof). The secreted stromelysin protein level in the supernatant was measured by ELISA. Dotted lines indicate the level of stromelysin expression in untreated cells with and without IL-1 stimulation. Error bars indicate the SEM for n = 3.

 
Correlation between efficacy in cell culture and in vivo

We have previously shown that intraarticular administration of ribozymes results in uptake into synovial fibroblasts and a tissue half-life of ~3 days (14). Furthermore, we have observed ribozyme-mediated inhibition of stromelysin mRNA expression in rabbit synovium in an IL-1-induced arthritis model using several of the ribozymes described here. Table IGo shows a comparison between cell culture and in vivo efficacy. Three of the four sites that show efficacy in cell culture (1049, 1363, and 1366) also show efficacy in vivo. These three sites are all in well-conserved parts of the coding region (>=84% homology at the nucleotide level in the surrounding region). To assess the predictive capability of the cell culture site selection screen, it is also important to evaluate the in vivo performance of ribozymes that failed in the cell culture screen. In this case, the correlation also holds, with site 883 showing negative results in cell culture and in vivo. In addition, one other ribozyme site that gave negative results in cell culture was tested in vivo and also failed to show efficacy (data not shown). Site 1410 showed marginal inhibition (not statistically significant) both in cell culture and in vivo.


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Table I. Correlation between cell culture and in vivo efficacy of stromelysin ribozymes1

 
The only exception to the correlation between cell culture and in vivo results was with the ribozyme targeting site 1489. This ribozyme showed efficacy in human cell culture but not in the rabbit model. This site resides in the poorly conserved 3'-UTR (only 66% homology in the surrounding region), raising the possibility that the mRNA in that region adopts a different secondary structure in the rabbit mRNA compared with the human mRNA, rendering the site inaccessible to ribozyme binding. In addition, three base changes were required in the binding arms of the ribozyme itself to make the rabbit-specific version, thus raising the possibility that the rabbit-specific ribozyme adopts a less favorable conformation compared with the human-specific ribozyme.

The role of stromelysin in cartilage catabolism

Ribozymes targeting sites 1049 and 1366 were tested for their ability to inhibit IL-1-induced loss of cartilage proteoglycan in the rabbit knee arthritis model. No efficacy was observed, despite reductions in stromelysin mRNA levels in the synovium (data not shown). Interpreting this result with respect to the role of stromelysin in cartilage catabolism was complicated by delivery issues. After intraarticular administration into healthy rabbit knees, synthetic ribozymes were readily taken up by synovial fibroblasts, but penetration into cartilage was extremely low (Fig. 3Go, a and b). Similar results were observed with radiolabeled ribozyme (data not shown). Using in situ hybridization, we confirmed literature reports (19) that both synovial fibroblasts and cartilage chondrocytes express stromelysin RNA in response to IL-1 (data not shown). Thus, although stromelysin could originate from either tissue, ribozymes were only present in the synovium. Interestingly, similar fluorescent ribozyme studies in a rabbit partial meniscectomy injury model show ribozyme uptake by cartilage chondrocytes in osteoarthritic-like lesions on the articulating surface (C. M. Flory and R. Moskowitz, unpublished data). This indicates that the compromised cartilage surface in a disease state allows ribozyme penetration.



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FIGURE 3. a, Uptake of rhodamine-conjugated ribozyme by rabbit synovium at 24 h after intraarticular injection into the knee (x400 magnification). b, Uptake of rhodamine-conjugated ribozyme by femoral condyle cartilage at 24 h after intraarticular injection into rabbit knee (x200 magnification). Uptake of rhodamine-conjugated ribozyme by chondrocytes in cultured articular cartilage explants at 4 h (c) and 24 h (d) postadministration (x200 magnification). In c and d, the cut surface is oriented to the left, and the intact articulating surface is to the right.

 
To address unambiguously the role of stromelysin in IL-1-induced cartilage catabolism, we utilized a cartilage explant model. In contrast to the impermeable barrier presented by a healthy articulating surface, cultured articular cartilage explants take up ribozymes readily, as shown in Fig. 3Go, c and d. Comparison of the 4-h and 24-h samples suggests that uptake progresses via diffusion of the ribozyme from the cut edge of the cartilage.

Cartilage explants were cultured in serum-free DMEM and treated with IL-1 to induce cartilage catabolism. Cartilage samples were analyzed for RNA content before and after IL-1 stimulation as shown in Fig. 4GoA. The active stromelysin ribozyme targeting site 1366 clearly inhibited the IL-1-induced stromelysin mRNA expression, whereas the inactive control did not. It is interesting to note that efficacy was observed in this ex vivo model with free ribozyme (i.e., no lipid formulation). Cell culture systems generally require the use of a cationic lipid vehicle to enhance cellular uptake of oligonucleotide, as used in Figs. 1Go and 2Go. The same ribozymes injected without a lipid vehicle in vivo were taken up into synovial cells and demonstrated down-regulation of the target RNA (see Flory et al. (14) and Table IGo). This may reflect differences in oligonucleotide uptake pathways in vitro vs in vivo. The freshly harvested cartilage explants may represent an intermediate state that more closely mimics in vivo uptake conditions.



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FIGURE 4. A, One micromolar active (1366A) and inactive (1366I) ribozymes targeting stromelysin site 1366 were added to the culture medium of fresh rabbit articular cartilage explants. After 24 h, IL-1 was added, and 6 h after IL-1 stimulation, RNA was extracted from the cartilage and stromelysin mRNA levels were determined by Northern analysis normalized to 18S rRNA. Error bars represent SEM for n = 3. B, Cartilage explants were cultured in the presence of 10 µg/ml aminophenylmercuric acetate-activated purified human stromelysin, 50 U/ml IL-1, IL-1 + 15 µM BB-94, or IL-1 + 5 µg/ml Actinomycin D (Sigma). The y-axis shows percent of proteoglycan remaining in the cartilage (amount in cartilage vs total amount in supernatant plus cartilage). Error bars represent SEM for n = 7. C, One micromolar active (1366A) and inactive (1366I) ribozymes were added to the culture medium of cartilage explants. Twenty-four hours later, IL-1 was added, and 48 h after IL-1 stimulation, proteoglycan release was measured. Error bars represent SEM for n = 6. *, p < 0.05 vs +IL-1 control by Dunnett’s; **, p < 0.05 vs +IL-1 control by Tukey-Kramer.

 
To assess catabolic activity in the explants, proteoglycan levels were measured in the culture medium and in cartilage tissue using a spectrophotometric assay. A statistically significant loss of proteoglycan could be measured in response to IL-1 stimulation, as shown in Fig. 4GoB. This IL-1-induced catabolism could be completely inhibited by a broad-spectrum synthetic hydroxymate MMP inhibitor, batimastat (BB-94) (20). Actinomycin D also inhibited IL-1-induced catabolism, indicating that the bulk of the catabolic activity resulted from transcriptionally induced gene expression rather than from posttranscriptional activation. Culturing in the absence of IL-1 but with exogenously added activated stromelysin protein resulted in dramatic proteoglycan loss. Further characterization of the explant assay showed that the basal level of catabolism in the absence of IL-1 could be reduced by culturing the cartilage for 24 h after tissue harvest and then washing to remove trauma-induced catabolic enzymes (data not shown).

Despite the fact that ribozyme treatment resulted in inhibition of the IL-1-induced stromelysin mRNA levels, we were not able to observe any ribozyme-mediated inhibition of IL-1-induced cartilage catabolism using a ribozyme targeting site 1366, as shown in Fig. 4GoC. Ribozymes targeting site 1049 were also tested and failed to inhibit cartilage catabolism (data not shown). Also, inhibition of cartilage catabolism was not observed with rhodamine-conjugated ribozyme or when 10-fold higher ribozyme concentrations were used or when ribozyme was delivered with LipofectAMINE (data not shown). The fact that ribozymes inhibited induction of stromelysin expression in IL-1-stimulated explants yet failed to inhibit catabolism suggests that induction of stromelysin expression is not a critical event in IL-1-stimulated proteoglycan loss in rabbit articular cartilage.


    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
By testing ribozymes targeting both accessible and inaccessible sites within the stromelysin message in cell culture and in vivo, we have established a clear correlation between inhibition of target RNA in cell culture and in vivo. Thus, cell culture screening provides a rapid method for identifying optimal ribozymes for target validation studies.

The ribozymes utilized in this study were highly specific for stromelysin-1 and, based on homology alignments and hammerhead ribozyme in vitro cleavage specificity, would not be expected to affect levels of related MMPs such as collagenase or stromelysin-2. In fact, the nucleotide sequences of stromelysin-1 and collagenase-1 are sufficiently different that only one hammerhead ribozyme site is conserved between the two RNAs; this site was not chosen for this study.

We have shown that IL-1-stimulated proteoglycan catabolism in cartilage explants can be inhibited by a broad spectrum protease inhibitor (BB-94) as well as by an inhibitor of transcription (Actinomycin D). Despite the fact that ribozymes targeting stromelysin were able to inhibit IL-1-induced stromelysin mRNA expression, no inhibition of proteoglycan degradation was observed. In this explant model, basal stromelysin RNA expression (i.e, without IL-1 stimulation) is relatively high, and the increase in stromelysin RNA expression in response to IL-1 is modest (roughly a 30% increase) as shown in Fig. 4Go. Although the ribozyme treatment only reduced total stromelysin RNA by ~30%, this represents a virtually complete inhibition of IL-1-induced stromelysin expression. Because some stromelysin expression is still detectable after ribozyme treatment, we can’t rule out a role for this basal level of stromelysin in cartilage catabolism. However, it’s clear that inhibiting all new transcription with Actinomycin D eliminates IL-1-induced cartilage catabolic activity; in contrast, specifically inhibiting new stromelysin transcription with a ribozyme shows no effect on cartilage catabolism. This result focuses interest on other IL-1-induced activities in these explants. Aside from stromelysin, there must be one or more genes that 1) are IL-1-induced at the transcriptional level (Actinomycin D result), 2) are themselves MMPs or have downstream catabolic consequences that are mediated through MMPs (BB94 result), and 3) are distinct from stromelysin (ribozyme result). It’s possible, for example, that the IL-1 treatment induces the expression of some unknown "Factor A" at the transcriptional level, which in turn activates the pro-form of constitutively present stromelysin protein, which then contributes to catabolic activity either through direct cleavage of cartilage or through activation of the pro-forms of other proteases. Thus, stromelysin could play a role in catabolism, yet its expression would not be the key IL-1-responsive activating event (played by "Factor A") that initiates the catabolic cascade.

Mudgett et al. (21) have recently reported that a stromelysin knockout mouse is susceptible to collagen-induced arthritis, another inflammatory arthritis model. This is consistent with the notion that stromelysin expression is not a critical factor in inflammatory arthritis. Although stromelysin does not appear to be an optimal therapeutic target in inflammatory arthritis, we cannot rule out a role for this MMP in osteoarthritis based on these studies. Osteoarthritis is a complex, multifactorial process of joint degeneration (22). The joint pathology differs histologically and biochemically between inflammatory arthritis models and more osteoarthritis-like injury models. Thus, different molecular targets may be appropriate for therapeutic intervention in each case.

Other methods for target validation include knockout animals, Abs, and specific small molecule inhibitors. In the case of stromelysin, the knockout mouse showed a similar phenotype to the ribozyme treatment. Arguably there are several advantages to the ribozyme approach, including the rapid timeframe and the ability to modulate the dose and magnitude of inhibition. This allows one to assess the degree to which gene expression must be inhibited to elicit the desired effect, which can be very important information for drug development. With Abs, technical hurdles include delivery to the appropriate target tissue, in this case cartilage matrix, as well as the timeframe to develop and characterize the Abs. It has been difficult to develop small molecule inhibitors that are truly selective for stromelysin-1 vs closely related MMPs (23). Ribozymes represent a rapid and specific method for inhibition of selective genes that are implicated in disease pathways. The resulting effect on phenotype (be it positive, negative, or neutral) provides a sensitive measure of the role of the gene in disease.


    Acknowledgments
 
We thank Michelle Richardson for assistance in harvesting rabbit articular cartilage, Jon Scherrer for preparing the rhodamine-labeled ribozyme, Dr. Vijaykumar Baragi (Parke-Davis Pharmaceutical Research) for providing human synovial fibroblasts, and Dr. Marcia Riggott-Babcock for assistance in preparing the figures.


    Footnotes
 
1 Address correspondence and reprint requests to Dr. Thale C. Jarvis at the current address: Impact Biosciences, Boulder, CO 80301. Back

2 Abbreviations used in this paper: MMP, matrix metalloproteinase; UTR, untranslated region; DPBS, Dulbecco’s phosphate-buffered saline. Back

Received for publication June 2, 1999. Accepted for publication April 13, 2000.


    References
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 

  1. Brinckerhoff, C.. 1991. Joint destruction in arthritis: metalloproteinases in the spotlight. Arthritis Rheum. 34:1073.[Medline]
  2. Hembry, R., M. Bagga, J. Reynolds, D. Hamblen. 1995. Immunolocalisation studies on six matrix metalloproteinases and their inhibitors, TIMP-1 and TIMP-2, in synovia from patients with osteo- and rheumatoid arthritis. Annu. Rheum. Dis. 54:25.[Abstract/Free Full Text]
  3. Okada, Y., M. Shinmei, O. Tanaka, K. Naka, A. Kimura, I. Nakanishi, M. Bayliss, K. Iwata, H. Nagase. 1992. Localization of matrix metalloproteinase 3 (stromelysin) in osteoarthritic cartilage and synovium. Lab. Invest. 66:680.[Medline]
  4. Hasty, K., R. Reife, A. Kang, J. Stuart. 1990. The role of stromelysin in the cartilage destruction that accompanies inflammatory arthritis. Arthritis Rheum. 33:388.[Medline]
  5. Cech, T. R.. 1992. Ribozyme engineering. Curr. Opin. Struct. Biol. 2:605.
  6. Zaug, A., M. Been, T. Cech. 1986. The Tetrahymena ribozyme acts like an RNA restriction endonuclease. Nature 324:429.[Medline]
  7. Breaker, R.. 1997. In vitro selection of catalytic polynucleotides. Chem. Rev. 97:371.[Medline]
  8. Uhlenbeck, O.. 1987. A small catalytic oligoribonucleotide. Nature 328:596.[Medline]
  9. Lange, W., E. M. Cantin, J. Finke, G. Dolken. 1993. In vitro and in vivo effects of synthetic ribozymes targeted against bcr/abl mRNA. Leukemia 7:1786.[Medline]
  10. Jarvis, T., L. Alby, A. Beaudry, F. Wincott, L. Beigelman, J. McSwiggen, N. Usman, D. Stinchcomb. 1996. Inhibition of vascular smooth muscle cell proliferation by ribozymes that cleave c-myb mRNA. RNA 2:419.[Abstract]
  11. Sioud, M.. 1994. Interaction between tumour necrosis factor {alpha} ribozyme and cellular proteins. J. Mol. Biol. 242:619.[Medline]
  12. Snyder, D. S., Y. Wu, J. L. Wang, J. J. Rossi, P. Swiderski, B. E. Kaplan, S. J. Forman. 1993. Ribozyme-mediated inhibition of bcr-abl gene expression in a Philadelphia chromosome-positive cell line. Blood 82:600.[Abstract/Free Full Text]
  13. Beigelman, L., J. McSwiggen, K. Draper, C. Gonzalez, K. Jensen, A. Karpeisky, A. Modak, J. Matulic-Adamic, A. DiRenzo, P. Haeberli, et al 1995. Chemical modification of ribozymes: catalytic activity and nuclease resistance. J. Biol. Chem. 270:25702.[Abstract/Free Full Text]
  14. Flory, C., P. Pavco, T. Jarvis, M. Lesch, F. Wincott, L. Beigelman, S. Hunt, D. Schrier. 1996. Nuclease-resistant ribozymes decrease stromelysin mRNA levels in rabbit synovium following exogenous delivery to the knee joint. Proc. Natl. Acad. Sci. USA 93:754.[Abstract/Free Full Text]
  15. Lyngstadaas, S. P., S. Risnes, B. S. Sproat, P. S. Thrane, H. P. Prydz. 1995. A synthetic, chemically modified ribozyme eliminates amelogenin, the major translation product in developing mouse enamel in vivo. EMBO J. 14:5224.[Medline]
  16. Wincott, F., A. DiRenzo, C. Shaffer, S. Grimm, D. Tracz, C. Workman, D. Sweedler, C. Gonzalez, S. Scaringe, N. Usman. 1995. Synthesis, deprotection, analysis and purification of RNA and ribozymes. Nucleic Acids Res. 23:2677.[Abstract/Free Full Text]
  17. Farndale, R., C. Sayers, A. Barrett. 1982. A direct spectrophotometric microassay for sulfated glycosaminoglycans in cartilage cultures. Connect. Tissue Res. 9:247.[Medline]
  18. Christoffersen, R. E., J. McSwiggen, D. Konings. 1994. Application of computational technologies to ribozyme biotechnology products. J. Mol. Struct. (Theochem) 311:273.
  19. Hutchinson, N., M. Lark, K. MacNaul, C. Harper, L. Hoerrner, J. McDonnell, S. Donatelli, V. Moore, E. Bayne. 1992. In vivo expression of stromelysin in synovium and cartilage of rabbits injected intraaarticularly with interleukin-1ß. Arthritis Rheum. 35:1227.[Medline]
  20. Wojtowicz-Praga, S., J. Low, J. Marshall, E. Ness, R. Dickson, J. Barter, M. Sale, P. McCann, J. Moore, A. Cole, M. Hawkins. 1996. Phase I trial of a novel matrix metalloproteinase inhibitor batimastat (BB-94) in patients with advanced cancer. Invest. New Drugs 14:193.[Medline]
  21. Mudgett, J., N. Hutchinson, N. A. Chartrain, A. Forsyth, J. McDonnell, I. Singer, E. Bayne, J. Flanagan, D. Kawka, C. Shen, et al 1998. Susceptibility of stromelysin 1-deficient mice to collagen-induced arthritis and cartilage destruction. Arthritis Rheum. 41:110.[Medline]
  22. Lohmander, L.. 1994. Articular cartilage and osteoarthrosis: the role of molecular markers to monitor breakdown, repair and disease. J. Anat. 184:477.
  23. MacPherson, L., E. Bayburt, M. Capparelli, B. Carroll, R. Goldstein, M. Justice, L. Zhu, S. Hu, R. Melton, L. Fryer, et al 1997. Discovery of CGS 27023A, a non-peptidic, potent, and orally active stromelysin inhibitor that blocks cartilage degradation in rabbits. J. Med. Chem. 40:2525.[Medline]
  24. Parry, T. J., C. Cushman, A. M. Gallego, A. B. Agrawal, M. Richardson, L. E. Andrews, L. Maloney, V. R. Mokler, F. E. Wincott, P. A. Pavco. 1999. Bioactivity of anti-angiogenic ribozymes targeting Flt-1 and KDR mRNA. Nucleic Acids Res. 27:2569.[Abstract/Free Full Text]
  25. Pavco, P. A., K. S. Bouhana, A. M. Gallegos, A. Agrawal, K. S. Blanchard, S. L. Grimm, K. L. Jensen, L. E. Andrews, F. E. Wincott, P. A. Pitot, R. J. Tressler, C. Cushman, M. A. Reynolds, T. J. Parry. 2000. Antitumor and antimetastatic activity of ribozymes targeting the messenger RNA of vascular endothelial growth factor receptors. Clin. Cancer Res. 6:2094.[Abstract/Free Full Text]



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