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*
Research Department, Cantonal Hospital St. Gall, St. Gallen, Switzerland;
Max Delbrück Center for Molecular Medicine, Berlin-Buch, Germany;
Institute of Experimental Immunology, Department of Pathology, University Hospital Zurich, Zurich, Switzerland; and
§
Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520
| Abstract |
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| Introduction |
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The protease in charge of generating most of the class I ligands and
their precursors in the cytoplasm is the proteasome (3, 4). The proteasome consists of a proteolytic core complex called
20S proteasome and a number of regulatory complexes that associate with
the 20S core to control its activity and recruit and unfold substrate
proteins. The 20S proteasome is shaped like a cylinder
constituted of four stacked rings (5). The outer two rings
are made up of seven
-type subunits that mediate the association
with the regulatory complexes, whereas the inner two rings consist of
seven subunits of the ß-type. Three of the ß-subunits, designated
, MB-1, and Z, possess in their processed form N-terminal threonine
residues that contribute their
-hydroxy groups as nucleophiles to
the three peptidolytically active centers of the protesaome. The
catalytic activities of the proteasome have been classified with
fluorogenic peptides as chymotrypsin-like, trypsin-like, and
peptidyl-glutamyl-peptide hydrolyzing (PGPH) (4).
Mutagenesis experiments in combination with inhibitor studies suggested
an assignment of PGPH activity to the
subunit, of trypsin-like
activity to the Z subunit, and of chymotrypsin-like activity to the
subunit MB-1 (6, 7, 8, 9).
The central involvement of the proteasome in MHC class I-restricted Ag processing was established with the help of proteasome-specific inhibitors. These inhibitors prevented the peptide-dependent maturation of MHC class I molecules in the ER and interfered in the most cases with class I-restricted presentation of T cell epitopes (10, 11, 12, 13, 14). In some models, however, treatment with proteasome inhibitors enhanced, rather than prevented, presentation of the respective epitopes. It was proposed that in these cases the epitopes or their precursor were generated by proteases other than the proteasome and that the proteasome destroyed, rather than generated, the respective peptides (15, 16, 17). Proteases such as the tripeptidyl peptidase II (18), furin (19), or the thimet oligopeptidase (20) have been suggested to play a role in the production of MHC class I ligands, although the in vivo evidence that these proteases are critically involved in Ag processing is either missing or scarce. There is, however, an alternative explanation for the aforementioned phenomenon; namely, that proteasome inhibition was only partial and that the residual proteasome activities produced different peptide fragments that could be better suited as MHC class I ligands or their precursors. Evidence for this scenario was recently obtained by Valmori et al. (17), who found that selective proteasome inhibition both in vivo and in vitro resulted in the generation of a MAGE-3 epitope that was not generated in the absence of proteasome inhibition. These findings suggest that partial proteasome inhibition may be a means to either prevent or enable Ag presentation. However, the dosage of proteasome inhibitors applied in these experiments was too high to allow cellular proliferation or survival.
In the present study we set out to test whether a partial inhibition of
the proteasome by treating cells with nontoxic doses of selective
proteasome inhibitors could be employed to either up- or down-regulate
Ag processing. For this investigation we chose lactacystin and
epoxomicin as selective proteasome inhibitors because they both inhibit
the chymotrypsin-like activity of the proteasome much faster than the
trypsin-like and PGPH activities. Lactacystin is a
Streptomyces metabolite that was discovered by virtue of its
ability to induce cell cycle arrest and neurite outgrowth in a
neuroblastoma line (21). The molecular target of
lactacystin was later found to be the proteasome and, in particular,
the N-terminal threonine residue of the ß-type proteasome subunits
MB-1 and, to a lesser extent, the subunit Z (5, 22). The
',ß'-epoxyketone inhibitor epoxomicin is a product of an
Actinomycetes strain that was identified based on its
ability to inhibit melanoma growth in vivo (23). Only very
recently was the proteasome identified as the target of epoxomycin that
also covalently binds to the subunits MB-1 and Z (24).
Although the proteasome inhibition profiles of these two inhibitors are
very similar, epoxomicin is about 100-fold more potent than
lactacystin.
For our study we selected four immunodominant viral epitopes that have been well characterized with respect to their generation and presentation. Three of these epitopes are derived from the lymphocytic choriomeningitis virus (LCMV) (25). The H-2Ld restricted epitope NP118 is processed from the LCMV nucleoprotein (residues 118126), whereas the H-2Db-restricted epitopes GP33 and GP276 are derived from residues 3341 and 276286 of the LCMV glycoprotein, respectively. In addition, we analyzed the H-2Ld-restricted epitope pp89168 of murine CMV (MCMV) encompassing residues 168176 of the MCMV immediate early protein pp89 (26). In this analysis we found that treatment of cells with low concentrations of lactacystin or epoxomicin enhanced the presentation of one epitope (GP276), whereas others were reduced (GP33, NP118, pp89168). At higher inhibitor concentrations, which interfered with cellular proliferation and survival, the presentation of all four epitopes was abolished, suggesting that their generation was proteasome dependent. These results are convincing evidence that a partial and selective inhibition of the proteasome at nontoxic doses can be applied to modulate Ag presentation to either enhance or attenuate an ongoing cytotoxic immune response.
| Materials and Methods |
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C4 is a murine fibroblast line derived from embryonic BALB/c
mice by SV40 infection in vitro (H. Hengel and U. H. Koszinowski,
unpublished data). Clone B8 was derived from C4 cells by transfection
of the immediate early gene 1 of MCMV encoding the pp89 protein
(27). MC57 is a C57BL/6-derived methylcholanthrene-induced
fibrosarcoma cell line (28). MCGP is a MC57-derived cell
line expressing the LCMV glycoprotein (29). RMA-S is a
TAP1-deficient variant of the Rauscher virus-transformed mouse T cell
line RMA (H-2b) (30). The human T
cell leukemia Jurkat and the MHC class II-deficient human
lymphoblastoid line T2 were obtained from American Type Culture
Collection (Manassas, VA). T2-Ld was obtained by
transfection of T2 with an H-2Ld expression
construct. The BWZ.36.1/CD8
fusion partner had been made by
transfecting
-ß--BW5147 mouse
lymphoma cells with NF-AT-lacZ reporter and CD8
expression constructs as described previously (31).
All cells were grown in complete IMDM containing 10% FCS, 2 mM
L-glutamine, and 100 U/ml
penicillin/streptomycin; supplements were required for B8 (250 µg/ml
G418), MCGP (0.8 mg/ml G418), T2-Ld (1 mg/ml
G418), BWZ.36.1/CD8
(0.5 mg/ml hygromycin B, 0.5 mg/ml G 418),
GP33Hyb, GP276Hyb, NP118Hyb, and pp89Hyb (1x HAT, 0.5 mg/ml
hygromycin B).
Viruses
The LCMV-WE strain was originally obtained from F. Lehmann-Grube (Hamburg, Germany) (32). The virus was grown and titrated on L929 cells, and virus stocks were stored at -70°C. Recombinant vaccinia virus (rVV) expressing the pp89 protein (33) was raised and titrated on BSC40 cells and stored at -70°C.
Mice
BALB/c (H-2d) and C57BL/6 (H-2b) mice were purchased from the Institut für Labortierkunde, Tierspital Zurich (Zurich, Switzerland) and kept in a specific pathogen-free environment.
Peptides
Synthetic peptides were obtained from Echaz Microcollections (Tubingen, Germany) and represent either the LCMV-WE glycoprotein-derived T cell epitopes GP3341 (KAVYNFATC; GP33) and GP276286 SGVENPGGYCL (GP276) restricted by H-2Db or the LCMV-NP-derived epitope NP118126 RPQASGVYM (NP118) and the MCMV-pp89 epitope pp89/168176 (YPHFMPTNL; pp89168) presented on H-2Ld. The 25-mer peptides used for proteasome digests encompassed LCMV-WE nucleoprotein residues 108132 KLKAKIMRTERPQASGVYMGNLTAQ, LCMV-WE glycoprotein residues 271295 TLSDSSGVENPGGYCLTKWMILAAE, and MCMV-pp89 residues 162186 RLMYDMYPHFMPTNLGPSEKRVWMS.
Antibodies
KL 25 is a mouse mAb reactive with the LCMV glycoprotein (34), and VL-4 is a rat mAb reactive with the LCMV nucleoprotein (35).
Purification of 20S proteasome and fluorogenic peptide assays
The purification and quantitation of the 20S proteasome from B8 cells as well as fluorogenic peptide assays were performed exactly as previously described (27). For the titration of lactacystin the inhibitor was added at the same time as the substrate, and fluorescence of the MCA and ß-naphthylamide leaving groups was measured after 30, 60, and 90 min to ensure that the reaction proceeded in a linear fashion. Lactacystin was purchased from Biomol (Plymouth Meeting, PA), and epoxomicin was synthesized as previously described (36).
Generation of T cell hybridomas
CTL lines recognizing LCMV or MCMV epitopes were derived by
infecting mice i.v. either with 200 PFU of LCMV-WE or 5 x
106 PFU of rVV-pp89 and preparing a spleen cell
suspension not earlier than 1 mo after infection. Spleen cells were
plated at 4 x 106 cells/well in a 24-well
plate in IMDM, 10% FCS, 2 mM L-glutamine, 100 U/ml
penicillin/streptomycin, 5 x
10-5 M 2-ME, 10% rat Con
A supernatant (as a source of IL2). Cells were restimulated every 710
days with peptide-loaded and irradiated (80 Gy) RMA-S or
T2-Ld cells at a CTL to APC ratio of 5:1. Loading
with synthetic peptides occurs for 1 h at room temperature with
10-7 M of the respective
peptide. The cells were CD8+ and of single
specificity after three rounds of restimulation. CTLs were harvested
34 days poststimulation, and 5 x 106
cells were mixed with equal numbers of BWZ36.1/CD8
fusion partner in
a 50-ml Falcon tube. Cells were washed in 37°C warm serum-free IMDM
and centrifuged at 500 x g for 5 min. The supernatant
was removed, and the pellet was loosened by gentle tapping. One
milliliter of prewarmed 50% PEG 1500 (w/v) solution in 75 mM HEPES (pH
8.0) was slowly added over the course of 1 min, with gentle stirring
with the pipette tip in between drops. After gently stirring for 1
additional min the polyethylene glycol was diluted by addition of 2 ml
of warm serum-free medium added in single drops over the course of 2
min. An additional 7 ml of warm serum-free medium was added over 2 min
before the tubes were placed in a 37°C water bath for 8 min. The
cells were centrifuged at 1400 rpm for 5 min and gently resuspended in
prewarmed complete IMDM. The cells (13 x
104 in 0.1 ml/well) were plated in 96-well
flat-bottom plates. After a 24-h incubation period 50 µl of 3x HAT
(300 µM hypoxanthine, 1.2 µM aminopterin, and 48 µM thymidine;
prepared from 50x frozen stock (Sigma, Buchs, Switzerland)) in
complete IMDM supplemented with 1.5 mg/ml hygromycin B were added. CTL
hybrids were generally observed within 2 wk of culture. Individual
clones were expanded into 24-well plates and tested for specificity in
lacZ assays. Positive clones were subcloned by limiting
dilution one to three times, and the monoclonal lines were maintained
in complete IMDM and 0.5 mg/ml hygromycin B/1x HAT. The most stable
hybridomas were selected for further application and named according to
their specificities GP33Hyb, GP276Hyb, NP118Hyb, and pp89Hyb.
T cell stimulation assays
MC57 or B8 mouse fibroblast cells were infected with LCMV-WE with a multiplicity of infection of 0.05, and after 24 h the cell surface expression of the LCMV glycoprotein was confirmed by flow cytometric analysis using the KL25 mAb. An acid wash procedure was performed to remove pre-existing peptide/MHC complexes from the surface as previously described (11). Briefly, about 107 cells were resuspended in 1 ml of buffer A (131 mM citric acid and 66 mM disodium phosphate, pH 3.1) and incubated under mild agitation for 2 min at 25°C and centrifuged for 1 min. The supernatant was immediately removed, and the cells were resuspended in 10 ml of complete IMDM medium and washed once in complete medium. Cells were then plated in 96-well round-bottom plates in 100 µl of complete medium, and lactacystin or epoxomicin was added at the indicated concentration. After 5 h (for B8 cells) or 12 h (for MC57 cells) of incubation at 37°C in 5% CO2 the cells were washed once with PBS to remove lactacystin, and CTL hybridomas (5 x 104) in a volume of 100 µl were added and incubated again for 18 h. Cells were spun down, and after a single wash with PBS the induced lacZ activity in the pelleted cells was measured in a chromogenic lacZ assay using chlorophenol red ß-galactoside (Roche, Basel, Switzerland) as substrate. The cells were lysed by addition of 100 µl of Z buffer (0.15 mM chlorophenol red ß-galactoside, 100 mM 2-ME, 9 mM MgCl2, and 0.125% Nonidet P-40 in PBS), and after a 1- to 4-h incubation at 37°C the absorbance at 570 nm (reference wavelength at 620 nm) was read using a SpectraFluor Plus plate reader (Tecan, Groding/Salzburg, Austria). For external loading of cells with synthetic peptides as a positive control, 5 x 104 cells were plated in 96-well round-bottom plates, and after a single wash with PBS, peptides were added at a final concentration of 10-7 M in a final volume of 100 µl. After an incubation for 1 h at room temperature the cells were washed once with PBS before addition of hybridomas.
Metabolic labeling and immunoprecipitation
Cells were infected for 24 h with LCMV (multiplicity of infection, 0.05), and 2 x 106 confluent cells were starved in cysteine/methionine-free RPMI 1640 plus 10% dialyzed FCS for 45 min at 37°C and labeled with 0.1 mCi/ml Tran 35S label (ICN, Eschwege, Germany) for 1.5 h. Labeling medium was removed, and cells were washed with PBS and chased in complete IMDM medium for the indicated time periods. Cells were harvested and lysed for 45 min on ice in lysis buffer (50 mM Tris-HCl (pH 8.0), 150 mM NaCl, 1 mM EDTA, 2% Nonidet P40, 0.75 µM aprotinin, 10 µM leupeptin, 2.8 µM pepstatin, and 0.85 mM PMSF). The postnuclear lysates were counted for [35S]methionine/cysteine incorporation, and equal aliquots were used for immunoprecipitation. The lysate was precleared for 1 h at 4°C with protein A or G-Sepharose CL-4B (Pharmacia, Uppsala, Sweden) followed by immunoprecipitation with the indicated Ab bound to protein G-Sepharose for 3 h at 4°C. The precipitates were washed three times in NET-TON (650 mM NaCl, 5 mM EDTA, 50 mM Tris-HCl (pH 8.0), 0.5% Triton X-100, 1 mg/ml OVA, and 0.05% NaN3), and after a change of tubes three times with NET-T (150 mM NaCl, 5 mM EDTA, 50 mM Tris-HCl (pH 8.0), 0.5% Triton X-100, and 0.05% NaN3). The beads were boiled in reduced Laemmli sample buffer, and 10% SDS-PAGE was performed before analysis of radioactivity on dried gels using a BAS 1500 radioimager (Fuji, Tokyo, Japan).
Western blotting
MC57 cells were treated for 16 h with the indicated concentrations of lactacystin, and cells were lysed in 50 mM Tris-HCl (pH 7.5), 5 mM MgCl2, 1 mM EDTA, 0.5% Triton X-100, 0.75 µM aprotinin, 10 µM leupeptin, 2.8 µM pepstatin, and 0.85 mM PMSF for 30 min at 4°C. The postnuclear supernatant was quantified by optical density, and aliquots of 130 µg of protein were applied to a 7.5% SDS-PAGE. The gels were blotted onto 0.2 µM nitrocellulose membrane (Schleicher & Schuell, Dassel, Germany), blocked with PBS/10% horse serum/5% (w/v) low fat dry milk/0.4% Tween-20, and agitated overnight at 4°C with a polyclonal anti-ubiquitin rabbit Ab (Dako, Zug, Switzerland) in PBS/2% low fat dry milk/0.1% Tween 20. The blots were washed and incubated for 1 h with the HRP-conjugated secondary Ab. After extensive washing with PBS/0.4% Tween 20, proteins were visualized on x-ray films using chemiluminescence substrate (Roche).
Proteasomal fragmentation of polypeptides and analysis of peptide products by HPLC and Edman degradation
Eighty micrograms of a synthetic 25-mer peptide derived from the
sequence of the LCMV-nucleoprotein (residues 108132), LCMV
glycoprotein (residues 271295), or MCMV-pp89 (residues 162186) was
incubated with 4 µg of purified 20S proteasome in a total volume of
1200 µl of digestion buffer (30 mM Tris-HCl (pH 7.5), 10 mM KCl, and
2 mM DTT) at 37°C in the presence or the absence of lactacystin. At
the indicated time points aliquots of 300 µl were taken and frozen to
stop the reaction. These cleavage products were analyzed on a µRPC
C2/C18 SC 2.1/10 reverse phase column using a SMART System (Pharmacia).
Eluent A was 0.1% trifluoroacetic acid (TFA); eluent B was 70%
acetonitrile and 0.1% TFA. The gradient was 1030% eluent B in 55
min; the flow rate was 100 µl/min. Peak fractions were collected,
dried, and redissolved in 60% acetonitrile/0.1% TFA. For the
identification of peptides, the samples were coimmunoprecipitated with
a matrix of
-cyano-4-hydroxycinnamic acid in acetone and analyzed by
MALDI-MS (VG-TofSpec, Fison Instruments, Manchester, U.K.). For
microsequence analyses of the HPLC-separated peptide samples, a Procise
protein sequencer system (Applied Biosystems, Foster City, CA) was
used.
Apoptosis assay
RMA cells were treated with lactacystin at the indicated concentrations for 14 h. As a positive control 2 x 106 Jurkat cells in 2 ml of complete medium were incubated with 200 ng of anti-human FAS mAb 7C11 (Immunotech, Marseilles, France) for 6 h. Cells were washed in PBS once, and staining with annexin V-FITC (Clontech, Palo Alto, CA) was performed for 20 min according to the manufacturers instruction. Flow cytometric analysis was performed on a FACScan flow cytometer (Becton Dickinson, Basel, Switzerland).
Thymidine incorporation
A number of 4 x 104 RMA or MC57 cells were plated in triplicate in round-bottom 96-well plates in 200 µl of medium supplemented with the indicated concentrations of lactacystin. The lactacystin containing growth medium was exchanged every day to avoid premature inactivation. [3H]Thymidine was added to different wells at a final concentration of 2.5 µCi after 0, 24, 48, or 72 h, and cells were incubated for 16 h and subsequently harvested by a Multimesh 2000 harvester (Dynatech, Embrach) onto glass microfiber filters, and the dried filters were covered by liquid scintillation fluid and counted in a beta counter.
| Results |
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To find appropriate concentrations for a selective and partial
inhibition of the chymotrypsin-like activity of the 20S proteasome, we
isolated 20S proteasomes from B8 fibroblasts to apparent homogeneity
and measured the effect of titrated concentrations of lactacystin on
the in vitro hydrolysis of four fluorogenic peptides. As displayed
in Fig. 1
, the substrates Suc-LLVY-MCA
and (Z)-GGL-MCA, which are frequently used to monitor chymotrypsin-like
activity, were inhibited at 1 µM lactacystin to 66 and 79%,
respectively. At the same concentration the trypsin-like activity
measured with the substrate Bz-VGR-MCA was not affected, and the PGPH
activity determined with the (Z)-LLE-ß-naphthylamide substrate was
slightly enhanced. It is noteworthy that the PGPH activity increased to
a maximum of 2-fold of the original activity, while the other three
activities were increasingly inhibited with rising lactacystin
concentrations. This may reflect the cooperativity between the
chymotrypsin-like and the PGPH activity, which has to date only been
shown with different substrates for the respective active sites but not
with the employment of a selective inhibitor (37). Taken
together we concluded from these titrations that a concentration
range of 0.11 µM lactacystin would be an appropriate starting point
to determine potential in vivo effects on Ag presentation.
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A frequent problem with CTL lines generated by in vitro
restimulation is that some CTL lines cannot be easily maintained for
very long periods and may vary in their affinity and cytotoxic activity
over the period of restimulations. To facilitate a thorough analysis of
Ag processing we therefore generated T cell hybridomas from CTLs
obtained from mice infected with LCMV-WE or a rVV encoding the pp89
protein of MCMV (rVV-pp89). After three weekly in vitro restimulations
with synthetic peptides corresponding to the epitopes LCMV-GP33,
LCMV-GP276, LCMV-NP118, and MCMVpp89168, respectively, the CTLs were
fused with BWZ36.1/CD8
cells. This fusion partner has the advantage
that it expresses cDNAs for CD8
and the bacterial ß-galactosidase
(lacZ) reporter gene under transcriptional control of
the IL-2 promotor and enhancer. Antigenic stimulation of the generated
T cell hybridomas can thus be easily monitored in chromogenic
lacZ assays. The specificity analysis of four selected
hybridomas designated GP33Hyb, GP276Hyb, NP118Hyb, and pp89Hyb revealed
that they possessed the expected peptide specificity and that the
response was restricted by the appropriate MHC class I molecule (Fig. 2
). Also, the recognition of endogenously
processed Ags was as expected, as the LCMV glycoprotein transfectant
MCGP was only recognized by the GP33- and GP276-specific hybridomas,
and the MCMV pp89 transfectant B8 exclusively stimulated the pp89168
hybridoma. Interestingly, a comparison of the sensitivity of the
hybridomas and the parental CTL lines revealed that the hybridomas were
10- to 100-fold less sensitive for the respective peptide epitopes
(38). This can be a major advantage for the analysis of Ag
presentation, as the sensitivity of CTLs in chromium release assays may
be too high to detect subtle differences in Ag processing.
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To determine the effect of titrated amounts of lactacystin on Ag
presentation in the LCMV model the fibroblast line MC57
(H-2b) or B8 (H-2d) was
infected with LCMV for 24 h. Subsequently, the cells were treated
with a mild acid wash procedure to remove pre-existing epitopes from
class I molecules, and the cells were incubated for 5 or 12 h with
the indicated concentrations of lactacystin before stimulation of the
hybridomas specific for GP33/H-2Db,
GP276/H-2Db, and
NP118/H-2Ld was determined in lacZ
assays. To monitor presentation of the MCMV pp89 epitope we used the
uninfected B8 fibroblast cells, because they constitutively express the
pp89 protein. As shown in Fig. 3
A, the presentation of the
GP33, NP118, and pp89 epitopes was reduced in a dose-dependent manner
in the range from 0.5 to 10 µM lactacystin. Already at 0.5 and 1 µM
lactacystin a substantial reduction in the presentation of these three
epitopes was observed in three independent experiments. The
presentation of the LCMV-GP276 epitope, in contrast, was enhanced by
treatment with 0.5 µM lactacystin by about 40%. Nevertheless, the
generation of this epitope seemed to be proteasome dependent, as its
presentation was reduced to background levels at 10 µM lactacystin. A
titration of lactacystin concentrations below 0.5 µM demonstrated
that GP276 presentation was gradually enhanced from 0.03 µM until a
maximum was reached at 0.5 µM (Fig. 3
B), and this increase
correlated with a proportional increase in the inhibition of the
chymotrypsin-like activity of the proteasome (Fig. 1
). To exclude that
the inhibition of epitope presentation at higher lactacystin
concentrations was due to a reduction in LCMV replication or the
production of LCMV gene products, we performed immunoprecipitations of
the LCMV glycoprotein from infected cells treated with lactacystin at
different concentrations for 24 h. As shown in Fig. 3
C,
no influence of lactacystin on the production of LCMV glycoprotein was
detectable, and this result was confirmed with flow cytometric analysis
of LCMV glycoprotein surface expression and intracellular nucleoprotein
expression (data not shown). Taken together, our results suggest that
low concentrations of lactacystin can be used to markedly up- or
down-regulate Ag presentation. This effect was dependent on the nature
of the epitope rather than on the synthesis rate or half-life of the
antigenic protein, as the presentation of two epitopes originating from
the same protein (GP33 and GP276) were affected in opposite
ways.
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To further substantiate that the observed effects on Ag
presentation were due to a partial inhibition of the chymotrypsin-like
activity of the proteasome, we used the specific proteasome inhibitor
epoxomicin, which resembled lactacystin in that it also inhibited the
chymotrypsin-like activity of the proteasome much faster than the other
peptidolytic activities (Fig. 4
A)
(24). Interestingly, epoxomicin also led to a reduction of
LCMV GP33 presentation and an enhancement of GP276 presentation at
concentrations at which the chymotrypsin-like activity of the
proteasome was partially inhibited, whereas the generation of both
epitopes was prevented at higher concentrations. Compared with
lactacystin, however, the epoxomicin-mediated effects on both peptide
hydrolysis and Ag presentation were observed at 100- to 1000-fold lower
concentrations due to the higher potency of the latter inhibitor
(24). This confirmation of our results with a second, very
specific proteasome inhibitor make it very unlikely that the cellular
phenomena are due to the inhibition of proteases other than the
proteasome.
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To compare the effects of proteasome inhibition on Ag presentation
and on the half-life of the proteins from which the respective epitopes
are generated we performed pulse-chase experiments with LCMV-infected
MC57 and B8 fibroblasts. The LCMV glycoprotein is synthesized with a
58-aa-long ER leader that is cleaved after cotranslational insertion of
the proprecursor protein into the ER lumen (39).
Subsequent to glycosylation, the transmembrane 70-kDa glycoprotein
precursor GP-C is cleaved again in a late secretory compartment to
yield the transmembrane 35-kDa protein GP2 and the 44-kDa noncovalently
attached ER lumenal protein GP1. GP1 and GP2 then assemble into
tetrameric complexes, which migrate to the cell surface
(40). The GP33 epitope is derived from the ER leader of
the glycoprotein, whereas the GP276 epitope may originate from both,
the GP-C precursor protein, or GP2. As shown in Fig. 5
A, the disappearance of GP1,
GP2, and GP-C over time was slowed down by 10 and 80 µM lactacystin
to a comparable extent, whereas 3 µM had less and 1 µM had barely
any effect. At 80 µM lactacystin the half-life of GP-C was prolonged
from about 6 to about 12 h, but the disintegration of
glycoproteins was not prevented completely, indicating that in addition
to proteasomal degradation, catabolism by other proteases or secretion
of the glycoprotein from the cell surface may occur. Interestingly, the
ratio of GP2 to GP-C was doubled at a chase period of 36 h at 10
and 80 µM lactacystin, indicating that the GP2 protein is more prone
to be stabilized by proteasome inhibition than the GP-C precursor. Our
experiments strongly suggest that the reduction in the presentation of
GP33 at 0.5 and 1 µM lactacystin cannot be attributed to a decrease
in glycoprotein degradation, but may be due to an alteration in peptide
processing. At a concentration of 3 µM lactacystin, however, the
reduction in GP33 and GP276 degradation may be partially due to a delay
in glycoprotein degradation by the proteasome. Also, for the MCMV-pp89
protein we had previously observed a stabilization of the protein at 10
µM lactacystin (41), which was not apparent at a
concentration of 1 µM lactacystin (data not shown). To compare the
effect of lactacystin on the degradation of LCMV-GP with that of bulk
ubiquitin conjugates, we performed a ubiquitin Western blot on total
lysates of LCMV-infected MC57 cells treated for 16 h with the
indicated concentrations of lactacystin. The result, shown in Fig. 5
C, indicates that there was no accumulation of high m.w.
ubiquitin conjugates at 0.5 µM lactacystin, whereas at 3 µM bulk
ubiquitin conjugates were almost as prominent as found for 7 and 10
µM lactacystin. It therefore appears that the degradation of both
LCMV-GP and bulk ubiquitin conjugates was inhibited by lactacystin,
with a threshold concentration of about 3 µM.
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We investigated whether a partial and selective inhibition of the
proteasomal chymotrypsin-like activity would change the profile of
peptide fragments produced by the 20S proteasome in vitro. To this aim
we incubated synthetic 25-mer polypeptides containing the GP276 epitope
(residues 271295), the NP118 epitope (residues 108132), and the
MCMV-pp89 epitope (residues 162186) with purified 20S proteasomes
from B8 cells in the presence of 0, 1, and 7 µM lactacystin. A
kinetic analysis revealed that the fragments produced did not vary over
time under the same conditions up to 24 h when most of the 25 mer
was digested. Hence, a 24-h incubation was chosen for analysis by HPLC
and Edman degradation. Lactacystin at a concentration of 1 µM slowed
the degradation of the 25 mer and altered the quantity and profile of
the peptide fragments produced. As an example we show the HPLC profile
of the digests of the GP276 containing polypeptide in Fig. 7
(see, for instance, the peak labeled A
in Fig. 7
). This effect was more pronounced at a concentration of 7
µM lactacystin, and at a concentration of 100 µM lactacystin the
peptide fragmentation by the proteasome was completely abolished (not
shown). We analyzed the peak that migrated at the same position as the
synthetic GP276 11-mer epitope by Edman degradation. The results listed
in Table I
show that the 11-mer epitope
(GP276286) is a minor peptide in this peak, which also contained
35-fold more of the 12-mer (GP275286) and 9.4-fold more of the 14-mer
(GP273286) peptide. Although we did not find an absolute enhancement
of the amounts of the 11 and 12 mer after treatment with 1.0 µM
lactacystin, their amounts relative to the 14 mer increased
considerably. These peptides are produced by a cleavage at the same
C-terminal residue, but the 14 mer requires cleavage after a leucine
residue at the N-terminus compared with an aspartic acid for the 12 mer
and a serine for the 11 mer. Cleavage C-terminal of leucine, however,
is expected to be preferentially blocked by lactacystin, thus providing
a rational for the reduction in 14 mer generation. Taken together, our
in vitro analysis provided evidence that the relative quantities of
fragments produced by the proteasome is altered in the presence of 1.0
µM lactacystin. These results are consistent with the idea that the
altered preferences of proteasome cleavages account for the epitope
specific up- or down-regulation of Ag presentation.
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To test whether immunomodulation by lactacystin at 0.51 µM
would interfere with cellular proliferation, we treated RMA T-cells and
MC57 fibroblasts for 3 days with different concentrations of
lactacystin and measured the incorporation of tritiated thymidine into
newly synthesized DNA every 24 h (Fig. 8
). In RMA cells lactacystin did not
affect thymidine incorporation at 0.5 or 1 µM lactacystin, whereas in
MC57 cells a retardation of proliferation was observed at 1 µM, but
not at 0.5 µM, lactacystin. A concentration of 10 µM lactacystin,
in contrast, severely interfered with DNA neosynthesis in both cell
types. Also, cellular proliferation and viability were reduced at 10
µM, but not at 0.5 or 1 µM lactacystin, as determined by trypan
blue exclusion staining and cell counts over a period of 3 days (not
shown).
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| Discussion |
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Recently, we have found that the treatment of LCMV-infected mice with the HIV-1 protease inhibitor Ritonavir at therapeutic concentrations markedly inhibited the generation and expansion of LCMV-specific CTLs in vivo (42). This immunomodulatory effect was neither due to the inhibition of viral replication nor to a direct effect on CTL activation, but was attributed to a reduction in the presentation of immunodominant LCMV epitopes. Interestingly, Ritonavir was found to inhibit the chymotrypsin-like activity of the 20S proteasome in vitro, while the trypsin-like activity was enhanced (41, 42). We reasoned that the modulation of proteasome activity would account for the in vivo reduction of Ag presentation, but we could not exclude that this effect was, at least in part, due to the inhibition of other proteases in APC. Hence we decided to investigate the phenomenon of immunomodulation through partial proteasome inhibition with two well-characterized proteasome inhibitors in this study. Lactacystin has been used for several years to study the in vivo effects of proteasome inhibition because it was believed to be exclusively specific for the proteasome (43). The conclusiveness of these experiments must now be questioned, since recent evidence showed that a cathepsin A-like enzyme from lysosomes (44) and tripeptidyl peptidase II (18) were also inhibited by lactacystin. However, at a concentration of 1 µM, which was used for modulation of Ag presentation in this study, tripeptidyl peptidase II is not inhibited, and even at 10 µM lactacystin the inhibition is only 50%. Moreover, lysosomal protein degradation was shown not to affect MHC class I-restricted Ag presentation, suggesting that the modulation of Ag presentation at 1 µM lactacystin is exclusively due to partial inhibition of the proteasome. This idea is corroborated by the observation that epoxomicin had the same effect on the presentation of the epitopes GP33- and GP276 at 100-fold lower concentrations. The proteasome is the only protease known to be inhibited by epoxomicin concentrations of up to 1 µM, which sufficed to fully inhibit the chymotrypsin-like activity of the proteasome as well as the presentation of GP33 and GP276. Taken together, the data obtained with these two highly specific proteasome inhibitors is very strong evidence that the generation of the four epitopes studied in this work is proteasome dependent and virtually ruled out that the observed effects on Ag presentation are due to the inhibition of other proteases. Moreover, it is reassuring to find that two proteasome inhibitors with the same inhibition profile affect Ag presentation in the same manner, which has not been previously demonstrated.
Lactacystin has the major disadvantage that it is difficult to synthesize and therefore very expensive (45). The synthesis of epoxomicin is comparatively less demanding (36), and as it is effective at much lower concentrations it will be feasible and very interesting to study its effect on the CTL response in LCMV-infected mice. These experiments should also clarify whether the effects on Ag presentation as we have obtained in LCMV-infected fibroblast lines can be extrapolated onto CTL generation and the hierarchy of LCMV epitopes in the infected mouse. In this respect it is interesting that a suppression of the T cell-mediated delayed-type hypersensitivity reaction to picrylchloride by epoxomicin was recently demonstrated in mice (24).
Although we have shown that a partial inhibition of the
chymotrypsin-like activity of the proteasome at nontoxic doses may be
used to modulated Ag presentation it may be even more attractive to use
specific inhibitors of the proteasomal trypsin-like activity or the
PGPH activity for this purpose because these agents are likely to have
fewer side effects and may be used at higher dosage. From mutagenesis
experiments in both yeast and mammalian cell lines it appears that the
chymotrypsin-like activity of the proteasome is the most essential for
overall protein degradation and cell viability (6, 7, 8). For
instance, complete replacement of subunit
, which is in charge of
the proteasomal PGPH activity, has been shown to modulate Ag
presentation without affecting cellular proliferation or viability
(7). Because many T cell epitopes contain glutamic acid or
lysines, an inhibition of the PGPH or trypsin-like activity is expected
to markedly affect polypeptide fragmentation and Ag processing. The
C-terminal anchor residue for most human and all mouse MHC class I
molecules is hydrophobic, and therefore the inhibition of the
chymotrypsin-like activity is likely to negatively affect the
generation of most class I ligands. Unfortunately, proteasome
inhibitors that are specific for either PGPH activity or trypsin-like
activity are presently not available, but the attempt to produce
peptide inhibitors with basic or acidic amino acids in the P1 position
and reactive C-terminal groups such as vinyl sulfones, boronic acids,
or epoxyketones may result in the development of such inhibitors
(46).
The question of whether a higher degradation rate of a protein results in better presentation of epitopes derived from this protein has been investigated in a number of systems. It is unclear at present why accelerated protein degradation led to a better Ag presentation of some epitopes (47, 48, 49), while the presentation of others remained unchanged (47, 50). For the LCMV glycoprotein and the MCMV pp89 protein it was apparent from our experiments that the extent to which protein degradation was retarded at 3 and 10 µM lactacystin correlated with the reduction of Ag presentation. A very different picture emerged for the LCMV nucleoprotein, which was extremely stable. Even over a chase period of 72 h we failed to observe a significant degradation in either the presence or the absence of lactacystin. Despite its long half-life the nucleoprotein gives rise to the NP118 epitope, which is lactacystin dependent and dominates the H-2Ld-restricted immune response. How can these findings be reconciled? Although the proteasome was shown to be in charge of degrading both short-lived and long-lived proteins (10), the amount of mature protein degraded per time unit must be rather low. One solution to this dilemma has been suggested by Yewdell et al. (51), who proposed the defective ribosomal products hypothesis. According to this hypothesis antigenic peptides from long-lived proteins are not derived from mature and properly folded proteins, but originate from defective translational products that may be degraded very rapidly. It would be interesting to test this hypothesis for the LCMV nucleoprotein experimentally. Evidence that an enhanced degradation of the LCMV nucleoprotein can promote NP118 presentation has recently been obtained by Rodriguez et al., who showed that a rapidly degraded chimeric protein consisting of a modified ubiquitin and the LCMV nucleoprotein gave rise to more NP118 epitopes than the long-lived nucleoprotein in its wild-type form (49).
The most surprising finding of this study was that, depending on the
epitope, low concentrations of lactacystin or epoxomicin can either
enhance or reduce Ag presentation. Our pulse-chase experiments
performed for the LCMV glycoprotein and nucleoprotein as well as the
MCMV pp89 protein provided no evidence that a reduction in protein
degradation can account for this phenomenon observed at 0.5 and 1 µM
lactacystin. The most likely explanation for this phenomenon is that a
selective inhibition of the chymotrypsin-like activity of the
proteasome changes the cleavage priorities of the proteasome, leading
to the production of different peptide fragments. This conclusion is
also consistent with the recent finding that marked allelic differences
exist in the extent to which lactacystin affects the stability of
different human MHC class I proteins, which is dependent on the
availability of appropriate peptide ligands (52). Also,
our in vitro data support this conclusion. The digests of three 25-mer
polypeptides by purified 20S proteasomes show unambiguously that a
1-µM concentration of lactacystin is sufficient to induce marked
changes in the proteasomal fragmentation. This effect becomes even more
apparent when higher concentrations of lactacystin are used, but
starting with 3 µM lactacystin, protein degradation becomes limiting
in vitro and in vivo. These two effects, a better fragmentation at low
inhibitor concentrations vs limiting proteolysis at higher
concentrations, most likely account for the presentation profile
observed for the GP276 epitope, which was maximal at 0.5 µM
lactacystin. In vitro, degradation of the LCMV-GP271295 polypeptide
is already slowed at 1 µM lactacystin. However, the fact that cells
can proliferate at this same concentration of lactacystin indicates
that the protein-degrading capacity of the proteasome in vivo is not
yet inhibited to an extent that would limit its housekeeping functions.
This makes sense, because the capacity of the proteasome must be high
enough to cope with situations of cell stress when much greater amounts
of misfolded proteins need to be removed. Taken together, it appears
that for generation of the GP276 epitope the cleavage priority of the
proteasome is suboptimal rather than the overall capacity to degrade
polypeptides, and it is interesting to note in this respect that it is
the cleavage priority of the proteasome that is altered by the
incorporation of the IFN-
-inducible subunits LMP2, LMP7, and MECL-1
into the complex (4).
In conclusion, our results strongly suggest that there is a concentration window for the application of selective proteasome inhibitors in which epitope production by the proteasome can be altered without affecting cellular viability. As the cytotoxic immune response tends to focus on a few immunodominant epitopes, it may be feasible to ameliorate CTL-mediated autoimmune assaults by altering epitope generation through the administration of selective proteasome inhibitors.
| Acknowledgments |
|---|
cells. | Footnotes |
|---|
2 Address correspondence and reprint requests to Dr. Marcus Groettrup, Kantonsspital St. Gallen, Laborforschungsabteilung, Haus 09, CH-9007 St. Gallen, Switzerland. ![]()
3 Abbreviations used in this paper: ER, endoplasmic reticulum; LCMV, lymphocytic choriomeningitis virus; MCA, 7-amido-4-methylcoumarin; MCMV, murine cytomegalovirus; PGPH, peptidylglutamyl-peptide hydrolyzing; Suc, succinyl; (Z), benzyloxycarbonyl; rVV, recombinant vaccinia virus; TFA, trifluoroacetic acid; HAT, hypoxanthine/aminopterin/thymidine. ![]()
Received for publication December 28, 1999.
| References |
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exposes a cryptic cytotoxic T lymphocyte epitope in HIV-1 reverse transcriptase. J. Immunol. 162:7075.
-inducible 11S regulator (PA28) and the LMP2/LMP7 subunits govern the peptide production by the 20S proteasome in vitro. J. Biol. Chem. 270:23808.