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,

Departments of
*
Pathology and
Surgery and
University of Pittsburgh Cancer Institute, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213; and
§
University of Pittsburgh Mass Spectrometry Facility, University of Pittsburgh Center for Biotechnology and Bioengineering, Pittsburgh, PA 15219
| Abstract |
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-chains to peptide-specific mouse T cell
hybridomas restricted by HLA-DR4Dw4. B cell lines presented both
peptides, but dendritic cells could only efficiently present the latter
epitope. In this paper, we show that dendritic cells degrade the
145159 peptide, removing four residues from the amino terminus.
Binding of the peptide to the class II restriction element is not
required for this process. The degradation product is resistant to
further cleavage, accumulates in the culture supernatant, and does not
bind to HLA-DR4Dw4 or stimulate T cell reactivity. Cleavage can be
blocked with bestatin, but not with other protease inhibitors tested,
or by a mAb directed against aminopeptidase N (CD13). Addition of an
acetyl group to the amino terminus of peptide 145159 also blocks
degradation, and allows dendritic cells to present the peptide to
specific T cells with greatly increased efficiency. These results
demonstrate that CD13 on dendritic cells is able to selectively and
efficiently degrade exogenously provided peptide Ags, in a process that
can be blocked by addition of an acetyl group to the amino terminus of
the peptide. Modification of the amino terminus of peptide epitopes
susceptible to degradation may prove to be useful as a general strategy
for enhancing their immunogenicity. | Introduction |
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, or in some
cases by Ag uptake itself, and afterwards the dendritic cell migrates
to a lymph node where Ag-specific T cells may be encountered
(10, 11, 12, 13, 14, 15, 16, 17, 18, 19). As with other cell types, dendritic cells are able to stimulate Ag-specific T cells following exposure to an appropriate peptide Ag (20, 21, 22, 23). This bypasses the requirement for intracellular processing of the Ag and has been used to direct the immune response toward a particular antigenic epitope. However, short peptides representing the minimal epitope for T cell stimulation may be critically affected by proteolysis because most residues of the peptide are essential for either MHC or TCR binding. As previously shown, some class I epitopes are degraded very rapidly by dendritic cells, suggesting that their utility as vaccines might be limited unless degradation can be inhibited (24).
In this study, we have investigated the ability of two peptide Ags which bind to class II MHC molecules to be presented by dendritic cells or B cell lines to Ag-specific T cell clones. Although B cell lines were able to present both peptides to these T cells, dendritic cells efficiently presented only one of the peptides and cleaved the other to an inactive fragment. We report that the observed degradation is mediated by CD13 expressed on dendritic cells and that modification of the amino terminus of the peptide rendered the epitope resistant to degradation.
| Materials and Methods |
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Bestatin, DTT, and tosyl lysine chloromethyl ketone were
purchased from Sigma (St. Louis, MO). Peptides were made by the Peptide
Synthesis Facility of the University of Pittsburgh Cancer Institute
(Pittsburgh, PA) using an Applied Biosystems (Foster City, CA) model
430A synthesizer. Acetylated peptides were prepared by reaction with
acetic anhydride after peptide synthesis was completed using a standard
protocol. Synthetic peptides used in this study are:
-chain 145159
KVQWKVDNALQSGNS (mass = 1674),
-chain 149159 KVDNALQSGNS
(mass = 1132), and
-chain 188203 KHKVYACEVTHQGLSS (mass
= 1787). The
-chain 145159 peptide was also prepared with an
acetyl group at the amino terminus (mass = 1715).
Propagation of dendritic cells from human PBMC
PBMC were obtained from normal donors by venipuncture and then by isolation by density centrifugation on Ficoll-Hypaque gradients (Pharmacia, Uppsala, Sweden). Next, they were resuspended in serum-free AIM-V medium (Life Technologies, Gaithersburg, MD) in T75 flasks. After 1 h at 37°C, nonadherent cells were gently decanted and washed out with HBSS (Life Technologies). Plastic-adherent cells were then cultured in AIM-V medium containing 1000 U/ml rIL-4 and 1000 U/ml rGM-CSF (Schering-Plough, Kenilworth, NJ) for 512 days. After 5 days in culture, 7590% of cells had a dendritic cell morphology and exhibited the following phenotype: CD3-, CD13+, CD14-, CD16-, CD32+, CD40+, CD80+, CD86+, and class I and class II MHC+. Class II HLA typing was performed on all donors either by Ab-based flow cytometry or by molecular typing (performed by Dewayne Falkner and Dr. Penny Morel, University of Pittsburgh School of Medicine).
Incubation of synthetic peptides with dendritic cells or B cell lines
Cells (0.8 x 106) were washed twice with AIM-V medium and resuspended in 50 µl AIM-V medium containing 0.15 mM peptide. After incubation at 37°C for varying times, cells were removed by centrifugation, and supernatants were stored at -70°C. For some experiments, as indicated in the figure legends, protease inhibitors or anti-CD13 were added to cells in 50 µl AIM-V medium for 30 min at 37°C before adding peptide and were present throughout the incubation period. mAb clone 3D8, specific for human CD13, was purchased from LabVision (Fremont, CA), and mAb L243 directed against HLA-DR was obtained from the American Type Culture Collection (Manassas, VA) for these experiments.
HPLC and tandem mass spectrometry
Peptides and cleavage fragments were separated on an analytical C18 column (µ-Bondapak, 3.9 mm x 30 cm, Waters Associates, Bedford, MA) with a linear gradient (360% B, 55 min) using a buffer system consisting of 0.1% trifluoroacetic acid/H2O (buffer A), and 100% acetonitrile containing 0.1% trifluoroacetic acid (buffer B) using a Rainin (Emeryville, CA) HPLC system. The flow rate was maintained at 1 ml/min, and 1-ml fractions were collected with absorbance monitored at 214 nm. For mass spectometry and sequence analysis, peak fractions from HPLC were evaporated to near dryness and resuspended in 50% acetonitrile/water containing 1% acetic acid, and then injected into a Fisons (Loughborough, U.K.) Quattro II triple-quadrupole mass spectrometer (at 5 µl/min) equipped with an electrospray ionization source, as previously described (24). Source temperature was maintianed at 70°C. Mass spectra were obtained by scanning mass-to-charge values of 500-1700 every 3 s and summing the individual spectra. The instrument was operated at unit resolution.
HLA-DR4Dw4 peptide binding assay
A total of 3 x 105 T2 cells transfected with HLA-DRB1*0401 were incubated overnight with 10 µM biotinylated class II-associated invariant chain peptide (CLIP)3 (invariant chain residues 81104) in the presence or absence of unlabeled competitor peptides in AIM-V medium at 37°C. Cells were washed in PBS containing 1% BSA and 0.02% sodium azide, and were then incubated with 0.1 µg streptavidin-PE (Sigma) for 1 h at 4°C, washed again, and fixed with 1% paraformaldehyde. Samples were analyzed by flow cytometry, and median fluorescence values were used to calculate the percentage of inhibition of binding according to the following formula: [1 - (median fluorescence experimental/median fluorescence biotinylated CLIP)] x 100.
T cell hydridoma culture and assays
T cell hybridomas specific for Ig
-chains were generated
previously by immunizing HLA-DR4Dw4 transgenic mice with human IgG as
previously described (25, 26). These T cells have been
shown to recognize epitopes presented by human B cell lines expressing
HLA-DR4Dw4 and Ig
-chains (26). For Ag-driven
proliferation assays, dendritic cells from HLA-DR4Dw4 donors were
cultured for 5 days in AIM-V with cytokines before addition of peptide
Ag for 1618 h at 37°C. Peptide was then removed by washing, and
cells were further cultured for 34 days before adding T cell clones.
B cell lines were incubated with peptides overnight the day before
their use in T cell assays. Ag-pulsed stimulator cells
(104/well) were added to 96-well flat-bottom
tissue culture plates (Costar, Corning, NY) containing
104 T cells/well in a total volume of 250 µl of
RPMI 1640 medium (Life Technologies) containing 10% FBS (HyClone,
Logan, UT). After incubation at 37°C for 24 h, culture
supernatants were collected and assayed for IL-2 using CTLL-2 or HT-2
(obtained from the American Type Culture Collection) as indicator cell
lines (104 cells/well). Coincubation of T cells
and APC were performed in triplicate. Indicator cells were incubated
with varying amounts of supernatant in 200 µl total volume at 37°C
for 18 h, and then 50 µCi of
[3H]thymidine in 10% FBS/RPMI 1640 was added.
Incorporation of radioactivity was converted to production of IL-2 for
each assay based on a standardized curve.
| Results |
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-chain peptides by T cell hybridomas
Transgenic mice expressing the human class II molecule HLA-DR4Dw4
were previously immunized with human IgG (26). Two T cell
hybridomas called 1.21 and 2.18, which recognize peptides corresponding
to amino acid residues 145159 and 188203 of human Ig
-chains,
respectively, were obtained as described and bound to HLA-DR4Dw4.
Consistent with a previous report (26), human B-LCL
expressing HLA-DR4Dw4 and endogenous Ig
-chains are recognized by
both T cell hybridomas, which produce IL-2 in response to stimulation
(our unpublished data). To test the ability of synthetic peptide
epitopes to stimulate these T cells, the B cell line Frev, which
expresses HLA-DR4Dw4 but lacks endogenous
-chains, was used
(26). In addition, the HLA-DM-deficient cell line T2
transfected with HLA-DRB1*0401, which has a defect in intracellular
loading of peptide Ags into class II molecules, was analyzed
(27). The latter cells synthesize endogenous
-chains
(our unpublished data), but do not efficiently load peptides from
endogenous protein sources other than the invariant chain into class II
MHC proteins.
As shown in Fig. 1
A, both
-chain peptides 145159 and 188203 could be presented by Frev B
cells, although with varying efficiency. Dendritic cells derived from
an HLA-DR4Dw4-positive donor (DF) presented the 188203 epitope with
similar efficiency, but had a reduced ability to present the 145159
epitope at 0.5 or 2.0 µM concentrations. Additional experiments shown
in Fig. 1
B extended these findings. The B cell line
T2-DR4Dw4 or dendritic cells from a second DR4Dw4-positive donor (WS)
were analyzed, and again only the 188203 epitope was presented
efficiently by dendritic cells. Presentation of both epitopes could be
blocked by incubation with a DR4-specific Ab, confirming that both T
cell clones were restricted by DR4Dw4. A B cell line derived from the
same donor which synthesizes endogenous
-chains could be recognized
by both T cell clones in the absence of exogenous peptides (our
unpublished data).
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The reduced ability to present the 145159 epitope suggested that
dendritic cells might selectively degrade the peptide. To test this
possibility, peptide 145159 was incubated in serum-free AIM-V medium
for increasing time with either dendritic cells or the B cell line
Frev, which is HLA-DR4Dw4 positive but does not synthesize Ig
-chains. Supernatants were collected by centrifugation and were
added to fresh Frev cells, which were then incubated with 1.21 T cells.
As shown in Fig. 2
A,
preincubation of the peptide with dendritic cells markedly reduced the
antigenic activity in the supernatant. After 2 h incubation time,
very little Ag could be detected in the supernatant compared with
control samples with no peptide added. This reduction does not appear
to depend upon binding of the peptide to MHC molecules because
dendritic cells from both HLA-DR4Dw4 positive and negative donors gave
similar results (our unpublished data). In contrast, preincubation with
equivalent numbers of Frev cells did not alter the subsequent
presentation of the peptide over the same time period (Fig. 2
).
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-chain. These data confirm that peptide 145159 is
cleaved by dendritic cells to yield the shorter fragment 149159.
There was no evidence of further degradation given that the latter peak
accumulated in the medium and no candidate smaller fragments were
visible on the HPLC profiles at any time point evaluated (Fig. 3
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To determine whether the observed cleavage of peptide 145159 was
likely to result in loss of MHC binding, we aligned the 145159
sequence with a peptide binding motif for HLA-DR4Dw4 determined by
Rammensee et al. (28) several years ago. The tryptophan at
position 148 of the peptide 145159 sequence is predicted to be the
first position within the HLA-DR4Dw4 binding motif and to represent an
important anchor residue. This suggested that peptide 149159, which
lacks this tryptophan, likely would not bind to HLA-DR4Dw4. To test
this experimentally, an assay was developed which measures binding of a
reference biotinylated CLIP of invariant chain to DR4Dw4-expressing T2
cells in the presence of unlabeled test peptides, including synthetic
145159 and 149159 peptides. As shown in Fig. 4
A, unlabeled CLIP and peptide
145159 effectively inhibit binding of the biotinylated CLIP, whereas
peptide 149159 does not compete for binding. In addition, incubation
of peptide 149159 with Frev B cells did not result in their
recognition by 1.21 T cells (Fig. 4
B). These results
demonstrate that removal of the four amino-terminal residues of the
145159 peptide abrogates its ability to bind and to be presented by
HLA-DR4Dw4 molecules.
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The proteolytic activity of dendritic cells responsible for cleaving peptide 145159 appeared to reside either inside the cells or at the cell surface, but not in a secreted protease because supernatants from dendritic cell cultures were unable to degrade the peptide (our unpublished data). However, it seemed unlikely that a protease contained inside the cells was responsible because cleavage of 145159 appeared to be nearly complete. Such efficient degradation presumably would require virtually quantitative internalization of the extracellular fluid or active uptake of the peptide by dendritic cells. Neither of these possibilities appears likely because we observed no differences in ability to degrade peptide between dendritic cell cultures that were highly endocytic (i.e., less mature) and those that were nonendocytic (i.e., fully mature) as measured by uptake of ligands through mannose receptor (our unpublished data). These observations suggest that a cell-surface protease would represent the most likely candidate for causing the observed cleavage.
To test which proteases in dendritic cells might cleave the 145159
peptide, we preincubated the cells with various protease inhibitors
before peptide pulsing. Of the compounds tested, only bestatin was able
to significantly reduce cleavage as measured by HPLC analysis (Fig. 5
, A and B) or T
cell assays (our unpublished data). This is consistent with degradation
mediated by a cell surface aminopeptidase such as CD13 which is present
on dendritic cells, as was suggested earlier for degradation of certain
class I epitopes (24). To test this directly, Abs reactive
with CD13 or HLA-DR were preincubated with dendritic cells before
addition of peptide. The latter was used as a control because dendritic
cells express similar levels of the two proteins. Supernatants were
then analyzed by HPLC or by T cell assay as shown in Fig. 6
. After 2 h, significant inhibition
of cleavage was observed in the presence of anti-CD13, but not with
anti-HLA-DR, and was correlated with enhanced presentation to 1.21
T cells. Both Abs bound to dendritic cells at comparable levels (our
unpublished data).
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If an exopeptidase such as CD13 were responsible for the observed
cleavage, it might be possible to block degradation by modification of
the amino terminus of the peptide. When an acetylated analogue of
145159 was incubated with dendritic cells, no significant cleavage
was seen in supernatants as analyzed by HPLC (Fig. 7
). The acetylated peptide and unmodified
peptides bind to HLA-DR4Dw4 with similar affinity, as evidenced by the
fact that they were able to inhibit binding of the biotinylated CLIP to
T2-DR4Dw4 cells to a comparable degree, showing less than 5%
difference in inhibition at all concentrations tested (our unpublished
data). However, the acetylated peptide was able to stimulate 1.21 T
cells at a much lower concentration than the unmodified peptide when
dendritic cells, but not B cell lines, were used as APC (Fig. 8
). This suggests that artificial
modification of the amino terminus can greatly facilitate the
presentation of epitopes by cells which would otherwise degrade them.
These results support the hypothesis that CD13 cleaves the peptide at
the amino terminus and suggest a strategy for enhancing the
antigenicity of peptides which are susceptible to cleavage by dendritic
cells.
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| Discussion |
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-chain 145159 peptide is degraded nearly quantitatively to a
fragment lacking the first four amino acid residues, corresponding to
positions 149159. We could not detect any partial cleavage products
with fewer residues missing. This initially suggested to us that an
endopeptidase might be responsible, but other evidence did not support
this, particularly the resistance to cleavage noted for the acetylated
peptide. One possible explanation for these results is that the first
four residues are sequentially cleaved very rapidly following
association with CD13 and that the remaining fragment either
dissociates from the protease or is intrinsically resistant to further
cleavage. In support of the first part of this hypothesis, an analogue
of peptide 145159 with substitution of Tyr for Trp at position 148
was cleaved to generate a nested set of degradation products lacking
residues at positions 1, 2, and 3 from the amino terminus, which are
detectable by HPLC and mass spectrometry sequencing (our unpublished
data). This suggests that Trp at position 148 facilitates the rapid
removal of residues from the amino terminus of the peptide by
CD13.
In addition to the present results, one of us had previously analyzed
the ability of dendritic cells to degrade peptides that can bind to
class I MHC proteins (24). In that study, an
aminopeptidase was suggested to participate in the degradation of
several peptide epitopes, but truncations of the carboxy termini were
also observed, suggesting the involvement of additional proteases.
Cleavage of these class I-binding peptides was more extensive than that
seen with
-chain 145159 in the present study, leading to the
production of nested sets of larger fragments and tri- and dipeptide
species. However, no general conclusions regarding the selectivity or
specificity of the cell surface exopeptidases involved in the cleavage
of these peptide epitopes could be made based on these experiments.
Although how CD13 is able to selectively cleave peptide 145159 and
why the 149159 product is largely resistant to further degradation
remain unclear in the present study, it should be possible to address
these questions by further characterizing the specificity of the
protease.
CD13, or aminopeptidase N, is a cell-surface proteinase with a wide
range of biological activities (29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41), including the
ability to trim the amino terminus of a peptide Ag bound to class II
MHC molecules on the surface of the mouse B cell line CH12
(42). It was suggested that such trimming occurs when the
ends of the peptide extend beyond the confines of the binding cleft,
allowing the protease access to these unprotected residues. In such a
model, the class II molecule would serve as a template for directing
cleavage. This is consistent with an earlier demonstration that binding
to class II MHC molecules protects peptides from cleavage
(43). We observe that in humans dendritic cells, but not B
cell lines, express CD13, consistent with the involvement of this
protease in selective degradation of peptide by dendritic cells (our
unpublished data). However, the previously reported epitope trimming
directed by class II MHC is likely to differ from that described in the
current study in an important way because dendritic cells lacking the
restriction element HLA-DR4Dw4 are also able to cleave efficiently
peptide 145159 into the same truncated product. In addition,
conversion of the peptide to truncated product is nearly complete after
1-h incubation with dendritic cells (Fig. 6
), which is relatively rapid
compared with the kinetics of peptide-binding to class II MHC
molecules. Both observations support the idea that cleavage of peptide
145159 by dendritic cells is not "directed" by class II MHC
molecules.
Protection from cleavage by ectoenzymes on dendritic cells is likely to be an important strategy for allowing presentation of susceptible peptide epitopes to T cells. It is possible to enhance presentation of an epitope from tyrosinase by class I MHC molecules on dendritic cells using bestatin and DTT to block aminopeptidase activity and carboxypeptidase activities, respectively (24). Such a strategy should also be applicable to class II MHC-binding epitopes. However, more simply, as shown in the current study, modification of the amino terminus by acetylation can interfere with enzymatic cleavage and selectively enhance class II MHC presentation of peptides by dendritic cells more than 10-fold. This is consistent with an earlier report by Allen et al. (44) showing that modifications of the amino and carboxy termini of peptides which bind to class II MHC greatly enhanced their antigenicity both in vitro and in vivo. In that study, no mechanism to explain the enhanced presentation was offered. Our results suggest that inhibiting peptide degradation by modification of the amino terminus can significantly enhance presentation of at least some CD4+ T cell epitopes by dendritic cells, which will likely result in enhanced priming of epitope-specific T cell responses in vivo. In contrast, modification of the termini of peptides which bind to class I molecules is unlikely to be effective for enhancing their antigenicity because such alterations would be expected to result in loss of MHC binding due to interference with critical hydrogen bond formation between residues of the class I molecule and the amino terminus of the peptide (45).
| Acknowledgments |
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| Footnotes |
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2 Address correspondence and reprint requests to Dr. Russell D. Salter, Department of Pathology, University of Pittsburgh School of Medicine, W957 Biomedical Science Tower, 200 Lothrop Street, Pittsburgh, PA 15213. E-mail address: ![]()
3 Abbreviation used in this paper: CLIP, class II-associated invariant chain peptide. ![]()
Received for publication June 24, 1999. Accepted for publication October 18, 1999.
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vß3 integrin and requires intracellular and extracellular calcium. Eur. J. Immunol. 27:1893.[Medline]
vß5 and CD36, and cross-present antigens to cytotoxic T lymphocytes. J. Exp. Med. 188:1359.
receptor-mediated induction of dendritic cell maturation and major histocompatibility complex class I-restricted antigen presentation after immune complex internalization. J. Exp. Med. 189:371.This article has been cited by other articles:
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