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Departments of
*
Neurology and
Microbiology, University of Colorado Health Sciences Center, Denver, CO 80262.
| Abstract |
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H chain
and
or lambda L chain sequences in various combinations, we
constructed functional Abs in IgG mammalian expression vectors. Three
Abs specifically stained MV-infected cells. One Ab also stained cells
transfected with the MV nucleoprotein, and a second Ab stained cells
transfected with the MV-fusion protein. This technique demonstrates
that functional Abs produced from putative disease-relevant IgG
sequences can be used to recognize their corresponding
Ags. | Introduction |
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95% of the CNS IgG is
synthesized locally (9), and 2575% of the Ab in the CNS
is directed against MV (6, 10). OGBs are also present in
the brains of several inflammatory CNS diseases of unknown cause, such
as multiple sclerosis and CNS sarcoidosis. Although OGBs are found in
88100% of CSF from multiple sclerosis (MS) patients, their
corresponding Ags are unknown (11, 12). Herein, we describe a strategy to examine the IgG repertoire expressed in the CNS of a patient with chronic progressive encephalitis, and to construct recombinant Abs to study Ab reactivity based on that repertoire. Our previous analysis of the IgG response in MS brain demonstrated restricted expression of particular IgG sequences, clonal expansion, and somatic hypermutation from germline V segments, features consistent with an Ag-driven response (13). With available IgG expression vectors, it is possible to construct recombinant Abs from putative disease-relevant sequences and to characterize their corresponding Ags. Thus, we performed a sequence analysis of the IgG repertoire in an SSPE brain as a model system to determine whether recombinant Abs constructed from candidate sequences could identify MV-specific Ags.
| Materials and Methods |
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Pathologically verified SSPE brain was frozen at -70°C within 12 h after death. A XhoI/oligo(dT)-primed cDNA library was constructed from multiple areas of gray and white matter and directionally cloned into the EcoRI/XhoI sites of the Lambda-ZAP vector (Stratagene, La Jolla, CA) as described (13, 14). The complexity of the library was 7.0 x 106, with an average insert size of 1.5 kb.
PCR amplification of IgG V regions and repertoire cloning
Representative IgG sequences were obtained using a nested PCR
strategy to amplify the IgG H chain (
) and L chain (
or
) V
regions from Lambda Zap DNA purified from the SSPE cDNA library as
described (14). Briefly, the first H chain PCR amplified
the region between the 5' polylinker site in the vector adjacent to the
cDNA and a 3' primer (CH1) complementary to a site in the first C
region of all four human IgG isotypes. In the nested PCR amplification,
the 5' primer was still located in the vector polylinker upstream of
the cDNA insert, and the 3' primer (CHJ) was complementary to the 3'
region of all six J segments and the 5' portion of the first C region
genes. The PCR amplifications of V region sequences from IgG L chains
were identical in reaction conditions to the H chain amplifications,
but with 3' primers matching equivalent sequences in
or
L
chains. PCR products were electrophoresed on 1% agarose gels, and the
nested products (450500 bp) were excised and cloned into the TA
cloning vector (Invitrogen, Carlsbad, CA) as described
(14). After plating, well-separated white colonies were
randomly picked and grown in liquid culture for plasmid DNA
preparation.
Sequencing and analysis of clones
Plasmids containing inserts were sequenced by the dideoxy method (15) with Sequenase 2.0 (U.S. Biochemical Corp., Cleveland, OH) and primers adjacent to the insert (T7 or T3). Sequences were analyzed with the PCGene software package (Intelligenetics, Campbell, CA) and aligned to the closest VH, VK, and VL germline segments in the VBASE database as described (13). Group analyses at significant levels were calculated at 95% confidence intervals.
Recombinant Ab construction and purification
H chain and L chain V regions were chosen from the sequence
analysis for expression as recombinant Abs in the mammalian expression
vectors pNG1.16 and pGK.11 (16). These cassette vectors
were developed to express complete Ig H and L chains with the subcloned
V regions of choice. Selected SSPE V region sequences in the TA vector
were individually PCR amplified as described (16), with
slight modifications. The sense and antisense primers were modified to
match exactly each template V region clone and were of a length to
provide the entire V region for subcloning after a single PCR
amplification. The 5' primers contained restriction sites for
subcloning, splice recognition signals for intron excision, a
polypyrimidine tract, the 3' exon of an Ig leader sequence, and regions
encoding the framework 1 regions of the Ig template clones. The 3'
primers contained regions complementary to the 3' ends of the
respective V region templates, splice donor sequences, and restriction
sites for subcloning (16). PCR amplification conditions
included 1020 ng of template, 15 pmol of each primer, 4 mM
MgCl2, and 2.02.5 U of Taq
polymerase (Perkin-Elmer Cetus, Emeryville, CA). Reaction parameters
were 34 cycles of 94°C for 30 s, 60°C for 30 s, and
72°C for 1 min (10 min in last cycle). PCR products were
electrophoresed on 1% agarose gels, excised, purified, subcloned into
the TA vector, and resequenced to insure fidelity and the correct
reading frames. The verified H chain V region DNA was digested with
Asp718I/XhoI, excised from agarose gels and
subcloned into the pNG1.16 H chain vector. The
or
V region DNA
was similarly digested with NruI/XhoI and
subcloned into those sites of the pGK.11 vector.
The
H chain constructs were cotransfected with each of the
or
L chain constructs by electroporation into Ag8.653 myeloma cells as
described (17) and diluted in 96-well microtiter plates at
densities between 103 and 2 x
104 cells per well. After 1417 days of
coselection with G418 (0.6 mg/ml) and mycophenolic acid, (Life
Technologies, Gaithersburg, MD) (17), culture supernatants
from wells containing 12 colonies were tested for the presence of IgG
H and L chains by slot blot analysis (18). Wells producing
maximal amounts of both IgG chains were transferred to flasks and grown
to high density with coselection in 100 ml IMDM, 10% FCS (Life
Technologies). IgG was purified from the culture supernatants by
protein A chromatography, with yields of 100300 µg per Ab.
Immunocytochemistry
Abs were tested for reactivity against MV by immunostaining uninfected Vero cells or cells previously infected with the Edmonston strain MV, grown on glass coverslips to near confluence, and fixed in acetone for 1 min. Immunocytochemistry was performed as described (19).
Each Ab was also used to stain Vero cells transiently transfected with expression constructs encoding each of six MV proteins (phosphoprotein, hemagglutinin, nucleoprotein, fusion, matrix, and polymerase). Vero cells were grown to 50% confluence on glass coverslips in 60-mm dishes with DMEM/10% FCS and then transfected with 1 µg MV expression construct DNA using Lipofectin, according to the manufacturers recommendations (Life Technologies). After 48 h, coverslips were fixed in acetone for 1 min and used for immunocytochemistry as described (19).
Immunoprecipitation and immunoblotting
MV-infected Vero cell lysates were immunoblotted and immunoprecipitated with recombinant Abs as described (19).
| Results |
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Particular IgG H and L chain sequences encountered multiple times in
our sequence analysis (Fig. 1
) probably
indicate overrepresented IgGs in the brain repertoire. This method of
repertoire analysis yielded similar results in a study of the B cell
response in an MS brain but did not reveal groups of sequences when
adult human blood, an abundant source of heterogeneous sequences, was
analyzed (13). In the SSPE H chain sequence analysis, 23
distinct V regions are identified by their CDR 3 sequences in Fig. 1
and are grouped by their relative abundance in the 52 clones analyzed.
Sequence variability was not generally observed within members of each
group, except occasionally for shorter 5' ends that demonstrated the
different endpoints of reverse transcriptase during the cDNA synthesis
of those clones. Nucleotide differences were noted between members of
one group at specific sites, but these differences occurred in less
than 1% of the entire sequences. To determine the germline origin of
these V region segments, all of the complete sequences were aligned
with the V BASE database of human IgG germline VH
segments (21). The SSPE IgG sequences were only 8397%
identical to their closest germline V segments, a greater difference
than the usual 12% observed for IgG allelic polymorphisms in humans
(21). In contrast to the prevalence of
VH3 family V segments in normal humans (21, 22), the VH1 germline family was found
more often than other families in the SSPE H chain analysis (48%). The
two germline VH segments DP79 and DP10 are
represented by 10 of the 23 sequences analyzed in this SSPE brain. To
predict which IgG sequences were overabundant in the brain, at least
two of the H chain sequences analyzed (No. 1 and 2) were
overrepresented at significant levels (19 ± 11%, 17 ±
10%) and may represent several of the OGBs observed in this SSPE
brain. Most of the H chain sequences appeared once in the analysis. As
each sequence was aligned to its most similar germline
VH segment, the nucleotide differences in
different regions of the clones (the framework or CDR regions 1 and 2)
were defined as replacement or silent mutations, based on their effect
on the translated IgG sequence. These accumulated differences were
included in Fig. 1
as ratios of replacement to silent mutations for
each sequence, and for several sequences demonstrated an
extraordinarily high proportion of replacement mutations in the CDR
regions 1 and 2. For example, the group 2 sequence had 10 changes in
the CDR 1 and 2 regions differing from the germline V segment, all of
which contribute to replacement mutations in the translated IgG. The
group 14 sequence had 11 changes in the CDR 1 and 2 regions, all
representing amino acid changes in the translated IgG sequence. This
accumulation of replacement mutations in the CDR regions is
characteristic of affinity maturation in the humoral immune response
(23, 24).
|
and
L chains were PCR amplified and sequenced in a fashion similar
to the H chain analysis. Although L chains derived from IgG- or
IgM-producing B cells would be indistinguishable from each other by
this PCR amplification protocol, the IgG greatly exceeds the amount of
IgM in the SSPE inflammatory CNS response (10, 25) and
should account for the majority of L chains in this analysis. The
chains revealed 23 overrepresented sequences and an
overrepresentation of the VK3 germline family.
Although 11 distinct sequences were encountered,
groups 1 and 2
were the most abundant and constituted 50% of all the clones
sequenced. The
sequences were 9197% identical to their closest
germline V segments, also suggesting somatic mutation from the germline
segments, rather than polymorphisms (26). But the
V
region sequences were less mutated from their respective
germline
segments than the
H chain sequences above. Like the
V regions,
many
sequences showed higher proportions of replacement mutations
in the CDR regions 1 and 2 compared with the framework regions. The
L chain sequence analysis was more cursory due to an incomplete
published inventory of the germline VL segments
but also demonstrated a clear overabundance of at least one
V
region sequence at significant levels (group 1, 35 ±
8%).
From the IgG sequence analyses of SSPE, several H and L chain sequences
that were either overrepresented or contained unusually high
numbers of CDR replacement mutations were chosen to produce intact
recombinant Abs for functional studies (Fig. 2
). IgG expression vectors were used to
express each inserted V region in the context of a functional Ig
promoter and enhancer and joined to the appropriate C regions to
assemble a functional IgG after cotransfection into myeloma cells. Each
of the V regions of
groups 1, 2, and 14 (Fig. 1
, and denoted G1,
G2, and G3 in Fig. 2
) was PCR amplified and cloned into the pNG1.16
expression vector. The
V region groups 1 and 2, or the
group 1
V region (Fig. 1
and denoted K1, K2, and L1 in Fig. 2
) were PCR
amplified and cloned into the pGk.11 expression vector. The H and L
chain expression constructs were cotransfected in every combination by
electroporation into the mouse myeloma cell line P3 x 63Ag8.653
(Fig. 2
). For example, the
1 V region sequence was coexpressed in
separate experiments with the
1,
2, or
1 L chain V region,
to be tested as IgG Ab C1, C2, or C5.
|
H chain
expressed with
1 (Ab C1) stained MV-infected cells, the same
1
did not stain cells when paired with either the
2 or
1 L
chains (C2 or C5, data not shown). Similarly, the
2 H chain
specifically stained MV-infected cells when paired with the
2 L
chain (C4; Fig. 3
1 or
1 L chains (C3 or C6; Fig. 3
14 V region sequence, which did not appear to be overrepresented in
this SSPE analysis, but which contained a large number of
replacement mutations in the CDR regions, also stained MV-infected
cells when paired with the K1 L chain (C7; Fig. 3
H chain
required some L chain specificity to demonstrate activity.
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Each Ab was also used to stain cells transfected with each
of six specific MV proteins. Abs eluted from the SSPE brain stained the
phosphoprotein, hemagglutinin, nucleoprotein, and fusion proteins
transfected into cells (Fig. 4
, A-D), as well as
the polymerase protein (data not shown). SSPE Abs did not
stain the MV matrix protein transfected into cells, which may reflect
the lack of Abs to the M protein in SSPE brain (27).
Recombinant Ab C4 stained only cells transiently transfected with the
MV nucleoprotein (Fig. 4
G), but not cells expressing the
phosphoprotein (Fig. 4
E), hemagglutinin (Fig. 4
F), or fusion protein (Fig. 4
H). Ab C7 stained
only cells transfected with the MV fusion protein (Fig. 4
L),
but not cells transfected with phosphoprotein, hemagglutinin, or
nucleoprotein (Fig. 4
, I-K). Ab C1 did not
stain specific MV proteins transfected into cells. In addition, each
recombinant Ab was negative on cells transfected with the MV polymerase
and matrix proteins (data not shown).
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| Discussion |
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We used nested PCR to obtain a representative sampling of the
H
chain and
or
L chain V regions from an SSPE brain cDNA library.
This strategy has been successfully used to examine the IgG repertoire
expressed in an acute MS brain and in normal human PBLs
(13). Specific VH,
VK, and VL sequences were
overrepresented in our SSPE brain. Many sequences were encountered only
once. The number of clones that we analyzed allows a statistically
significant assignment as a group to only the largest groups (groups
1 and 2,
1 and 2, and
1). The occurrence of multiple IgG
sequence groups from the SSPE brain is consistent with the presence of
OGBs in SSPE and was also found in a similar analysis of IgG
synthesized in MS brain (13). Analysis of larger numbers
of IgG clones may reveal additional sequence groups corresponding
to OGBs.
Each of the VH region sequences differed in homology from its closest germline V segment, ranging from 8397% identity. These differences are greater than the usual 12% polymorphism observed for IgG V segment alleles in humans (21). They are not likely to be Taq polymerase errors during PCR amplification, since, for several selected clones, additional PCR amplification in preparation for recombinant Ab construction showed no additional nucleotide changes introduced into the clones. Rather, the differences seen in VH sequences more likely constitute somatic mutation of various IgGs expected in the prolonged B cell response to MV in SSPE brain.
The OGBs in SSPE brains are either
or
L chain predominant
(28). Thus, it was important to amplify and characterize
the contribution of sequences from both L chain isotypes, in
reconstituting the functional recombinant Abs. Specific
and
L
chains were overrepresented in the SSPE brain, as has been found in
SSPE CSF (28). Like the H chain analyses, the
VK sequences also differed from their closest
germline V segment genes at levels (9197% identity) indicating
somatic mutation and affinity maturation in the L chain V regions. In
striking contrast to VH sequences, the
VK sequences mutated to a lesser degree from
their germline V segments. If, as we expect, these L chain sequences
were associated in vivo with the SSPE H chain sequences, then the
apparently different mutation rates must be reconciled. It is possible
that the less mutated L chain sequences are not associated with IgG H
chains, but instead are expressed in IgM-producing B cells, or are
expressed as free L chains. Indeed, other forms of L chains could not
be distinguished from IgG-derived L chains by our PCR amplification and
sequence analyses, and free L chains have been reported in SSPE brain
(28). On the other hand, the predominant Ab in CSF of
infectious CNS diseases is IgG and should contribute most L chain
sequences (10, 25). The lower mutation rate of IgG
V
regions from their germline V segments agrees with previous findings
(29). Several functional secondary hybridoma Abs against
influenza virus hemagglutinin have been sequenced in which the
VK L chain segments were mutated at rates 10- to
15-fold lower than the adjoining VH segments
(30, 31). Thus, the most abundant
VH, VK, and
VL sequences analyzed here may be coexpressed in
SSPE OGBs. Verification of these H/L chain pairings in vivo in the SSPE
brain would require purification of sufficient amounts of specific OGB
proteins to sequence the separate IgG chains.
The purpose of analyzing the IgG repertoire in SSPE brain and its
utility in examining other inflammatory CNS diseases of unknown origin
are the subsequent use of the Ab sequences to identify their
corresponding Ags. From this SSPE analysis, the two most abundant H
chain sequences and the group 14 sequence, containing a high proportion
of replacement mutations, were expressed as Abs. All three of the
sequences reacted against MV when coexpressed with particular L chains,
suggesting that our selection criteria for H chain sequences were valid
for determining disease-relevant Abs, or that the majority of sequences
in SSPE brain are MV specific, or both. The most abundant IgG sequences
and the most highly mutated sequence were IgGs directed against MV, the
cause of SSPE. Furthermore, only one L chain conferred reactivity for
each of the H chains; when two different L chains were combined with
each H chain, specific immunostaining was lost. In addition,
1 and
2 sequences both specifically stained MV-infected cells, but only when
combined with different L chains. Thus, for each functional Ab, the H
chain has a relatively specific requirement for its coexpressed L
chain, and the functional combinations in these recombinant Abs are
likely to mimic the in vivo combinations originally encountered in
brain. Note that the third VH sequence (
14)
also stained MV-infected cells when combined with only one of the L
chains tested, but worked with the same L chain (K1) as worked for the
1 sequence. Since both
1 and
14 were not likely to have
been coexpressed with the same L chain in the brain, functional Ab
reactivity must be permissive to some degree of L chain substitution.
Although L chain usage has been shown to be critical in defining
epitope specificity (32), the ability of an Abs H chain
to be shuffled with several L chains and retain Ag specificity has also
been noted for Ab reactivities to haptens, DNA, and cardiolipin
(33, 34). The ability to shuffle L chains enhances the
feasibility of recombinant Ab experiments if the pairing of H and L
chains need not duplicate the exact pairing originally found in vivo.
Since IgG expression is represented as OGBs in SSPE as well as in other
infectious and inflammatory CNS diseases, these more abundant sequences
should help guide the initial pairings of H and L chains in functional
assays.
The SSPE recombinant Abs identified MV Ags. Ab C1 did not stain any of the transiently transfected MV proteins tested and may be directed against an untested MV protein or antigenic determinants that are altered or not expressed in these transfected cells. Ab C4 stained cells transfected with and expressing the MV nucleoprotein, but not cells transfected with the phosphoprotein, hemagglutinin, or fusion protein. A second recombinant Ab, C7, stained cells transfected with the MV fusion protein, but not cells transfected with the phosphoprotein, hemagglutinin, or nucleoprotein. C4 and C7 appear to reflect the predominant MV reactivity by IgG in SSPE brain (35, 36). Although both MV nucleocapsid and fusion protein can be detected in SSPE brains, the MV matrix protein as well as Ab to the matrix protein is greatly reduced or absent (37). The first Ab responses we detected with our most abundant or highly mutated sequences were also to the MV N and F proteins. This suggests that our strategy to characterize the IgGs most actively expressed in the SSPE brain reflects the characteristic immune response previously observed in SSPE and that similar Abs in other inflammatory CNS diseases may also be those involved in progression of disease.
C4 also mimics a N protein reactivity we obtained earlier by immunopanning a broad phage-displayed repertoire of SSPE Fabs on MV-infected cells, and which enriched disease-relevant Fabs that were subsequently used to identify their corresponding Ags (19). We previously isolated four Fabs from the same SSPE brain that reacted specifically with the MV P or N protein (19), but none of those Fab sequences appeared in our present survey of IgG sequences. Possibly those Fabs were derived from sequences in brain not observed in this limited repertoire analysis but were nevertheless high affinity Fabs that enriched by panning. The Fab immunopanning technique is more useful in quickly selecting high affinity Fabs from a large population of randomly combined H and L chain sequences (38, 39), and in purifying their corresponding Ags. The SSPE Fabs derived from panning immunoprecipitated their Ags, whereas the Abs generated here from the most abundant or highly mutated sequences were not of sufficiently high affinity to do so. Once the putative disease-relevant Abs are identified, the techniques described here will be useful to rapidly detect the Ags in other brains by immunostaining. The ability to construct bivalent recombinant IgG from Fab-derived sequences may also improve their binding to Ags, thus providing better reagents for the identification of those Ags.
The techniques presented here can be applied directly to other inflammatory CNS diseases of unknown etiology, such as MS. Overall, no fewer than 16 agents and viruses have been associated with MS, but none as yet has been tightly linked to the disease (40). The presence of other Ab reactivities in MS brain may obscure the search for a causative agent and would require studying more MS patients and correlating the disease course with brain-derived Ab reactivity.
| Acknowledgments |
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| Footnotes |
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2 Address correspondence and reprint requests to Dr. Donald H. Gilden, Department of Neurology, University of Colorado Health Sciences Center, 4200 East Ninth Avenue, Mailstop B182, Denver, CO 80262. E-mail address: ![]()
3 Abbreviations used in this paper: OGB, oligoclonal band; CSF, cerebrospinal fluid; SSPE, subacute sclerosing panencephalitis; MV, measles virus; MS, multiple sclerosis; HTLV, human T cell leukemia virus; VZV, varicella zoster virus. ![]()
Received for publication April 28, 1999. Accepted for publication July 7, 1999.
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