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Department of Immunology, The Scripps Research Institute, La Jolla, CA 92037
| Abstract |
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| Introduction |
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A combination of phorbol ester and calcium ionophore can mimic many aspects of the biochemical signals required for mature T cell activation (7). Recently, it has been demonstrated that these same pharmacological agents can also induce the differentiation and survival of isolated DP thymocytes (8, 9, 10). In this instance, however, a narrow range of concentrations of ionomycin and PMA, as well as limited exposure, are required. This system allows one to directly measure intracellular changes as a function of time after initiation of the activating signal. Using this system, we have directly measured the activation of MAP/ERK kinases and changes in expression of downstream gene targets that accompany the very earliest stages of differentiation of isolated thymocytes. We have made the unexpected observation that the strength of stimulus plays a critical role in the kinetic regulation of MAP/ERK kinase activation. In addition, we show that the temporal pattern of MAP kinase activation has important consequences for downstream gene regulation, and presumably thymocyte differentiation. Moreover, our results point to a novel mechanism, in addition to strength of signal, by which modulation of a single downstream signaling pathway can differentially affect gene expression. Thus, the MAP kinase signaling pathway can transmit more information than a simple on-off switch that couples cell surface signals to changes in gene expression.
| Materials and Methods |
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TCR
-chain knockout mice (11) were purchased
from The Jackson Laboratory (Bar Harbor, ME) and were housed under
specific-pathogen-free conditions.
Inhibitors
The selective mitogen-activated ERK-activating kinase (MEK) inhibitors PD98059 (New England Biolabs, Beverly, MA) (12, 13) and U0126 (Calbiochem, La Jolla, CA) (14) were used in culture at concentrations of 25 and 210 µM, respectively.
Cell culture
Thymocytes derived from TCR
-chain knockout mice were induced
to differentiate over 44 h by PMA and ionomycin treatment in a
two-step culture system as previously described (8, 9, 10).
Briefly, 8 x 106 cells/ml were cultured
with 0.2 ng/ml PMA and 0.2 µg/ml ionomycin in the presence or absence
of selective MEK inhibitors. After 20 h, cells were washed and
cultured for an additional 24 h in the absence of stimulation. A
coreceptor reexpression assay was used to determine the lineage
commitment of thymocytes, as previously described (15). In
this assay, cultured thymocytes are treated with pronase to remove cell
surface coreceptor. Thymocytes are then cultured for an additional
20 h to allow reexpression of newly synthesized cell surface CD4
and CD8, a reflection of gene expression and lineage commitment.
Flow cytometry
Thymocytes were stained with anti-CD4-PE (Life Technologies)
and anti-CD8
(conjugated to Cychrome or APC) mAbs (PharMingen,
San Diego, CA) or single-color stained with anti-CD69-biotin
(PharMingen) and streptavidin-APC (Biomedia, Foster City, CA). Stained
cells were analyzed using CellQuest software on a FACSort upgraded to a
FACSCaliber (Becton Dickinson, San Jose, CA). Shown is the log
fluorescence of 5,00010,000 viable cells, gated according to their
sideways and forward light scatter.
To determine the distribution of early growth response 1 (Egr-1) expression in thymocyte subsets, thymocytes were surface stained with anti-CD4-PE and anti-CD8-APC mAbs and then internally stained for Egr-1 as previously described (16) using an anti-Egr-1 antiserum (sc-189) (Santa Cruz Biotechnology, Santa Cruz, CA). The same protocol was also used for internal staining with an anti-Nur77 antiserum (sc-990) (Santa Cruz Biotechnology). This particular antiserum was generated against Nurr1 but cross-reacts with Nur77. Nurr1 is not expressed in the thymus (17). A second specific anti-Nur77 antiserum (sc-7014) (Santa Cruz Biotechnology) gave similar results, although the intensity of staining with this particular reagent and corresponding secondary Ab was markedly lower (data not shown).
MAP kinase assay
Thymocytes were stimulated with 0.2 µg/ml ionomycin and various concentrations of PMA at 37°C in the presence or absence of 25 µM PD98059. MAP/ERK kinase activity in total thymocyte cell lysates (1.5 x 105 cell equivalents) was measured in triplicate by the 32P-phosphorylation of a specific peptide substrate as previously described (18).
RT-PCR
Total RNA was isolated from thymocytes using the RNeasy RNA kit (Qiagen, Chatsworth, CA) and reverse transcribed using the SuperScript Preamplification System (Life Technologies, Gaithersburg, MD) according to the manufacturers instructions. Reactions contained 10 pmol of each primer, 1x PCR buffer (Life Technologies), 0.2 mM dNTPs, 2 mM MgCl2, 1 U Taq polymerase (Life Technologies), and 5 µl appropriately diluted cDNA in a total reaction volume of 25 µl. Cycle conditions were 94°C for 4 min followed by 30 cycles of 94°C for 30 s, 60°C for 40 s, and 72°C for 1 min. Primer sequences have been previously reported (16, 18) or are available on request. Comparisons for a given gene are made between identical cell equivalents of cDNA.
Electrophoretic mobility shift assay
Nuclear extracts derived from 1 x
106 cultured thymocytes were assayed for Egr-1
DNA binding activity using an
[
-32P]dCTP-labeled oligonucleotide probe
containing an Egr-1 consensus binding site as previously described
(16).
| Results |
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DP thymocytes derived from TCR
-chain knockout mice (typically
>90% DP) cultured for 20 h with low concentrations of PMA and
ionomycin down-regulate CD4 and CD8 (Fig. 1
A). After an additional
24 h of culture in the absence of stimulation, the majority of
thymocytes transit to a
CD4+8low phenotype (Fig. 1
A). Although both CD4 and CD8 lineage thymocytes can pass
through a phenotypically similar stage (15, 19), the
majority of the CD4+8low
thymocytes present after 44 h of culture belong to the CD4 lineage
(8, 9), as assessed using a coreceptor reexpression assay
(15) (Fig. 1
A). In contrast, thymocytes that do
not receive stimulation in primary culture remain DP (Fig. 1
A). CD4 single-positive thymocytes generated under these
conditions express other markers indicative of thymocyte maturation and
have been demonstrated to produce cytokines after stimulation through
CD3/CD28 (Refs. 8, 9, 10 and data not shown).
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To investigate how long a MEK signal was required for the induction of
thymocyte maturation, PD98059 was added at various times after addition
of PMA + ionomycin. If PD98059 was added as late as 8 h, but
before 18 h, after initiation of culture, there was also a marked
inhibition of the production of CD4 lineage thymocytes (Fig. 1
, B and C). Thus, differentiation of DP thymocytes
to a more mature phenotype requires sustained MEK activity during the
initial activation phase of the culture, although subsequent cellular
changes are MEK independent.
The activation of TCR-
- thymocytes in the
presence of MEK inhibitors not only inhibited thymocyte differentiation
but also decreased the proportion of DP thymocytes at the end of
culture, suggesting an increase in cell death under these conditions
(Fig. 1
, B and D). Thus, the effects of such
inhibitors on cell survival in culture were investigated further. As
shown in Fig. 2
, there is increased
recovery of thymocytes that have been stimulated with PMA + ionomycin
in the absence of MEK inhibitors as compared with unstimulated
controls. This is consistent with previous results using this system
(8). At 20 h of culture, the presence or absence of
MEK inhibitors has little effect on cell recovery (Fig. 2
B).
In contrast, at 44 h, the recovery of cells activated with PMA +
ionomycin in the presence of PD98059 (Fig. 2
A) or U0126
(Fig. 2
B) is significantly reduced in comparison to cells
triggered in the absence of inhibitors, and below medium controls. In
the absence of activation, however, the equivalent concentrations of
PD98059 and U0126 had no detrimental effects on cell recovery,
indicating that the effect of such inhibitors on the survival of DP
thymocytes is unlikely to be the result of nonspecific toxicity. This
is further supported by the lack of any effect of PD98059 if added late
to culture (Fig. 1
, B and C). Together, the data
indicate that there is poor survival, and possibly enhanced death, of
thymocytes that have been activated in the absence of MEK-mediated
signals.
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In vitro kinase assays were performed to directly measure the
activation of MAP/ERK kinases during DP thymocyte differentiation.
Because differentiation and survival of thymocytes in this system is
dependent on the concentration of PMA, we were also able to directly
compare kinase activation under conditions that induce cell
differentiation or cell death. A high (20 ng/ml) concentration of PMA
(in the presence of ionomycin), which is optimal for mature T cell
activation but induces thymocyte death (Refs. 7 , 9 , and 25 and data not
shown), elicits a rapid rise in MAP/ERK kinase activity (Fig. 3
A). The peak of enzymatic
activity is transient and rapidly declines within 30 min, followed by a
sustained lower plateau of activity. Reducing the concentration of PMA
to 0.5 ng/ml eliminates the early rise of MAP/ERK kinase activity,
although by 2 h kinase activity increases to a level comparable to
that seen with 20 ng/ml PMA (Fig. 3
A). Surprisingly, at the
concentration of PMA required to induce optimal thymocyte
differentiation (0.2 ng/ml), there is a gradual increase in MAP/ERK
kinase activity that even by 5 h does not reach the level obtained
with higher concentrations of PMA (Fig. 3
A). As expected for
bona fide MAP/ERK kinase activity, this low level activity could be
inhibited by PD98059 (Fig. 3
B). Although we do not detect
induced enzymatic activity in cultures treated with 0.2 ng/ml PMA at
early time points, there is clearly functional MAP kinase activation at
least by 2 h as assessed by changes in gene expression (see
below).
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To determine how these distinct patterns of MAP/ERK kinase
activation would impact gene expression, RT-PCR analysis was performed
on thymocytes activated with high (20 ng/ml) or low (0.2 ng/ml)
concentrations of PMA, all in the presence of ionomycin (Fig. 4
A). CD4 gene expression was
down-regulated after 5 h of culture with high or low
concentrations of PMA. CD8
and CD8ß genes displayed a similar
pattern of expression, although the higher concentration of PMA had a
more profound effect. These expression patterns are consistent with the
observed initial down-regulation of CD4, and to a lesser extent CD8
,
on the cell surface following activation with PMA (Fig. 1
).
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In contrast to these results, the Nur77 gene, encoding a transcription
factor implicated in T cell death (29) and
thymocyte-negative selection (30), is up-regulated by
stimulation of thymocytes with ionomycin alone (Fig. 4
A),
consistent with a previous report (31). This up-regulation
is transient, however, and Nur77 gene expression returns to basal
levels by 2 h in culture. At low concentrations of PMA, there is
only a modest increase in expression, whereas in the presence of 20
ng/ml PMA, high level Nur77 expression is sustained (Fig. 4
A). The maintenance of Nur77 expression by PMA is
inhibitable by PD98059 (Fig. 4
B), suggesting that the
duration, but not initiation, of expression of Nur77 may be influenced
by the MAP/ERK kinase signaling pathway. Together, these results
demonstrate that both the kinetics and magnitude of MAP/ERK kinase
activation play a role in regulating downstream transcription factor
gene expression.
Slow accumulation of active MAP kinase on a per cell basis
The results presented in this study indicate that PMA concentration can regulate the level and kinetics of induction of MAP kinase activity, resulting in alterations in the temporal pattern of gene expression. To support the interpretation that the observed slow accumulation of MAP kinase activity is on a per cell basis as opposed to a gradual increase in the number of cells with activated MAP kinase, we stained thymocytes for CD69 at various times after activation. Rapid induction of CD69 in this system is sensitive to PD98059 (not shown).
As shown in Fig. 5
, low level cell
surface CD69 is first detected at 1 h in thymocytes activated with
20 ng/ml PMA. By 3 h after activation, all the thymocytes express
high levels of CD69, and expression is maintained at the 5-h time
point. In contrast, thymocytes triggered by 0.2 ng/ml PMA have no
detectable CD69 at 1 h and only low level expression at 3 h
after activation. By 5 h after initiation of culture, there is
only a slight difference in expression of CD69 between thymocytes
triggered with the different concentrations of PMA. These results show
that all thymocytes are responsive to stimulation and that the
expression of cell surface CD69 increases, on a per cell basis with
time. The kinetics of CD69 induction is dependent on the concentration
of PMA. These results support the view that during thymocyte
differentiation there is slow accumulation of active MAP kinase on a
per cell basis.
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The pattern of gene expression obtained with cultured thymocytes
would suggest that in the very earliest stages of positive selection,
before Egr-1 and CD69 up-regulation, there might be a rapid and
transient up-regulation of Nur77. There are no markers that allow one
to isolate thymocytes that have received positive selection signals in
vivo within the time frame that we have analyzed in vitro. However, to
test whether the predicted pattern of gene expression was consistent
with that observed in the thymus, we stained thymocytes for cell
surface CD4 and CD8 in conjunction with internal staining for Egr-1 or
Nur77. We focused on the DP thymocyte subpopulation, containing cells
that have most recently received positive selection signals. Consistent
with our previous finding (16),
510% of DP
thymocytes express Egr-1 (Fig. 6
).
Up-regulation of Egr-1 in the thymus is a consequence of selection
events (16), as further evidenced here by the reduced
frequency of Egr-1+ DP thymocytes in TCR
-chain-deficient mice (Fig. 6
). Nur77 is detectable in significantly
fewer DP thymocytes than is Egr-1 (Fig. 6
). However, like Egr-1, the
frequency of Nur77+ thymocytes is reduced in TCR
-chain-deficient mice (Fig. 6
). These results are consistent with
the proposed transient expression of Nur77 in cells that have just
initiated positive selection.
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| Discussion |
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Our data also suggest that in addition to cell differentiation, the MAP kinase signaling pathway may be required for regulating the survival of DP thymocytes undergoing selection. Thus, there may be significant overlap in the signals involved in these two facets of positive selection. Bcl-2 has been reported to be up-regulated in thymocytes that have been stimulated with concentrations of PMA and ionomycin that induce differentiation (8), and this is a possible mechanism by which signaling via the Ras/MAP kinase pathway also regulates survival. It remains to be determined whether this pathway also regulates thymocyte survival in vivo.
Sustained MAP kinase activation is required for nuclear translocation and subsequent induction of cellular differentiation in other systems (32) and may be a common regulatory mechanism. It is also possible that extended activation of this pathway is required to trigger successive waves of expression of transcriptional regulators and downstream targets. The delayed and transient down-regulation of coreceptor genes may fall into this category. However, we have also shown that conditions that are optimal for differentiation result in surprisingly slow accumulation of MAP kinase activity. This gradual increase in enzymatic activity may partly explain the necessity for sustained activation of MEK to induce cell differentiation in this instance. In contrast, conditions that induce cell death result in rapid induction of high level MAP kinase activity. The distinct pattern of activation of this downstream signaling pathway during differentiation may be one way in which TCR affinity is ultimately coupled to cell fate. Moreover, if different genes have different thresholds for activation, then low level MAP kinase activity induced during positive selection may only activate a specific subset of potential target genes. Egr-3 is a case in point, where under conditions that elicit differentiation of thymocytes, there is low level expression of this gene.
Recently, it has been demonstrated that the MAP kinase pathway functions as an on-off switch during oocyte maturation (33). In this system, increasing the concentration of agonist results in an apparently graded response that is actually a result of an increasing number of responding cells and not changes in the magnitude of the response of individual cells. In contrast to this, the data presented in this study point to slow accumulation of MAP kinase activity on a per cell basis. To verify that the changes in gene expression observed by RT-PCR actually reflect changes in the response of individual cells, the induction of cell surface CD69 expression, which is Ras dependent (27, 28), was studied. The results show that all thymocytes are responsive to stimulation as assessed by induction of CD69, regardless of the strength of the stimulus. Importantly, the data also show that the kinetics of CD69 induction is dependent on the strength of the signal. These results are entirely consistent with the observed effects of PMA concentration on the temporal pattern of CD69 gene expression, and they support the interpretation that during thymocyte differentiation there is slow accumulation of active MAP kinase on a per cell basis. Thus, rather than an on-off switch, we favor a rheostat model of downstream signaling that allows the weak signals of positive selection to engage a very specific program of gene expression via "low and slow" MAP kinase activation. Certainly, it remains to be determined whether the temporal regulation of the MAP kinase pathway by PKC activation in this model system is a close mimic of TCR-mediated activation during positive selection in vivo. However, given the stringent requirements for inducing the differentiation of isolated thymocytes, it is reasonable to expect that the pattern generated under these conditions is similar to that induced during selection.
Our results also suggest a novel mechanism, in addition to strength of signal, by which modulation of a single downstream signaling pathway can differentially affect gene expression. Thus, the kinetics of MAP kinase activation may control the expression pattern, and thus temporal overlap, of transcription factors such as Nur77 and Egr-1 that play critical roles in regulating cell survival and cell differentiation. We have found that conditions that favor thymocyte death in culture induce a rapid up-regulation of Nur77 and Egr-1, and expression of the former is sustained by a MEK-dependent mechanism. In sharp contrast, differentiation is associated with transient expression of Nur77 and delayed, but interestingly not reduced, up-regulation of Egr-1. In vivo, a significantly smaller number of DP thymocytes express Nur77 than Egr-1, consistent with a transient up-regulation of Nur77 and a more sustained up-regulation of Egr-1 during the initial phase of positive selection as well. The cell fate of DP thymocytes that express Nur77 as a consequence of TCR activation is not known, and we cannot rule out the possibility that that these cells are in the process of negative selection. However, we also detect a similar pattern of up-regulation of Nur77 in AND TCR transgenic DP thymocytes (34) on an H-2b selecting background (data not shown). In addition, data suggest that the thymic cortex, where DP thymocytes reside, is not the major site of negative selection (35). Thus, the data are consistent with expression of Nur77 in DP thymocytes that have just initiated positive selection. Although the downstream targets of Egr-1 in the thymus remain to be identified, overexpression of this transcription factor can influence the threshold of activation of DP thymocytes during positive selection (36).
The importance of regulating the temporal patterns of expression of transcription factors may be enhanced by the potential for direct or indirect interactions between them. In this regard, Egr-1 has been implicated in delayed early expression of Nur77 (37). Low affinity/avidity interactions that are essential for positive selection may therefore promote a particular ordered sequence of gene expression as a consequence of both the level of activity and the temporal pattern of activation of downstream signaling pathways.
| Acknowledgments |
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| Footnotes |
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2 These authors contributed equally to this work. ![]()
3 Address correspondence and reprint requests to Dr. Jonathan Kaye, Department of Immunology, IMM-8, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037. E-mail address: ![]()
4 Abbreviations used in this paper: DP, CD4+CD8+ double positive; Egr, early growth response; ERK, extracellular regulated kinase; MAP kinase, mitogen-activated protein kinase; MEK, mitogen-activated ERK-activating kinase. ![]()
Received for publication February 3, 1999. Accepted for publication April 26, 1999.
| References |
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and ß block thymocyte development at different stages. Nature 360:225.[Medline]
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