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*
Clinical Pathology Department, Clinical Center, National Institutes of Health, Bethesda, MD 20892; and
Department of Medicine, Duke Medical Center, Durham, NC 27710
| Abstract |
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30 as the protease-resistant element. Thus, the
hydrophobic peptide sequence following f-MIGWII can account for the
unusual properties of lemA noted above. Analogous modification could be
used to alter the properties of other peptide Ags presented by class I
MHC products. | Introduction |
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Like other LM Ags presented by classical class I MHC molecules (10), the products containing f-MIVIL and f-MIVTLF are secreted by live LM. Consequently, they are effectively delivered to the endogenous processing pathway as virulent LM invade the cytoplasm of infected cells (8, 9). By contrast, lemA is a membrane-bound protein, whose presentation is not critically linked to cytoplasmic invasion. APC exposed to nonvirulent or heat-killed bacteria (which do not traffic extensively into the cytoplasm) readily present this Ag to f-MIGWII-immune CD8 cells (7, 11). Although other nonviable exogenous Ags can also be presented in association with class I MHC products (12, 13), the efficacy with which lemA is presented is noteworthy. H2 M3wt -restricted, f-MIGWII-specific CD8 effectors dominate cell lines generated from the spleens of LM-immune mice when nonviable LM are used as the Ag source (7, 14), despite the presence of many other potential Ags in this crude Ag product.
In studying lemA processing, several distinctive findings have been noted. Presentation is unaffected by deletion of the TAP, suggesting peptide processing does not take place in the cytoplasm (15, 16). Indeed, presentation by macrophages can be blocked by lysosomotrophic amines (which inhibit endosomal acidification) and by pepstatin (which inhibit the endosomal protease cathepsin D), suggesting a critical role for endosomal processing (11). Unlike other well-documented examples of this phenomenon, which are characterized by binding of immunogenic peptides to recycling MHC molecules, however, lemA processing is also profoundly blocked by low doses of brefeldin A (11). Although lemA clearly undergoes proteolytic processing within cells, we have noted previously that bioactive lemA is extremely resistant to proteolytic degradation in vitro (17), even by the potent nonspecific enzyme proteinase K (PK).
Given the ongoing interest in defining and exploiting alternative pathways for class I-mediated presentation of exogenous proteins, the mechanisms underlying these phenomena merit further evaluation. Since previous studies have all been performed using whole bacteria or crude bacterial extracts containing a variety of potentially bioactive contaminants, we have cloned a truncated variant (t-lemA) containing only the first 33 amino acids of lemA. These code the immunogenic N-terminal f-MIGWII hexapeptide, and the subsequent 27 amino acids, which are essential for preservation of the initial formyl group during biosynthesis (18), and for maintaining the hydrophobic character of the Ag. This cassette was inserted in front of a carboxyl-terminal histidine tag in the expression vector pET24a to facilitate purification and expression in Escherichia coli. The following studies demonstrate that the resulting recombinant 5.4-kDa Ag, purified to near homogeneity by metal chelation chromatography, recreates the biochemical and functional properties of crude lemA in the absence of other bacterial proteins or lipids. Thus, the unusual properties of lemA can be fully accounted for by the covalent association of the immunogenic f-MIGWII sequence with the hydrophobic, protease resistant scaffolding provided by the lemA733 sequence. Manipulation of this simple motif may prove to be a useful strategy for altering the biochemical stability and processing requirements of other class I-restricted peptides.
| Materials and Methods |
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PK, brefeldin, chloroquine, phosphomolybdic acid, phosphatidyl ethanolamine, cardiolipin, phospholipid standards, OVA, polyethylene glycol 1000, and PMSF were purchased from Sigma (St. Louis, MO). Pepstatin, isopropyl ß-D-thiogalactopyranoside (IPTG), n-octylglucoside (OG), restriction enzymes NdeI and SalI, and kanamycin were purchased from Boerhinger Mannheim (Indianapolis, IN). Silica HPTLC plates were produced by EM Science (Gibbstown, NJ). Synthetic f-MIGWII was prepared by Peptide Technology (Gaithersburg, MD).
Animals
Seven- to 12-wk-old male C57BL/6 (B6) mice were purchased from The Jackson Laboratory (Bar Harbor, ME) and housed in a barrier facility within the National Institutes of Health. TAP-deficient B6 mice (19) originally obtained from L. Van Kaer were kindly provided by J. Bennink (Bethesda, MD). All animal strains and cell lines, unless specifically indicated, expressed H2 M3wt.
Bacteria
LM of strain 10403-S (20) was used to prepare DNA
template and heat-killed LM (11). E. coli
strains INV
F' (Invitrogen, San Diego, CA) and BL21(DE3) (Novagen,
Milwaukee, WI) were used in the amplification and expression of
plasmids containing t-lemA.
Preparation of t-lemA
The lemA sequence from nucleotides 28383
(5) was cloned from LM DNA by PCR using the synthetic
oligonucleotide primers
5'-ATTACATATGATAGGATGGATTATTGCTATCGCTGTT-3' and
5'-GTCGACACGGTTACGGTATTTTACAAGGCTG-3'. To this end, a small
amount of bacterial DNA (from microwave-disrupted bacteria) and primers
(0.2 µM final concentration) was subjected to 30 cycles
of PCR using preformulated beads containing Taq polymerase,
nucleotides, and buffer (Pharmacia Biotech, Piscataway, NJ). The
resulting 108-nt insert engineered to contain an NdeI
restriction site at the 5' end and a SalI site at the 3' end
of the coding sequence was inserted into the plasmid pCR2.1
(Invitrogen) and expanded using E. coli strain INV
F'.
Insert was excised from the plasmid using NdeI and
SalI; gel was purified in a 3% agarose gel and inserted
into the polylinker site in the expression vector pET24a (Novagen). The
resulting recombinant t-lemA-pET24a plasmid was expanded in E.
coli INV
F', purified, and then transfected into BL21(DE3).
Expression of t-lemA protein
The final product, t-lemA, is 46 amino acids in length with a predicted molecular mass of 5.4 kDa and the sequence MIGWIIAIAVVVILVLIYFGL YNSLVKYRNRVDKLAAALEHHHHHH. To express this product, BL21(DE3) transfected with t-lemA-pET 24a was incubated with Luria-Bertani (LB) medium containing 1 mM IPTG for 3 h using conditions suggested by the manufacturer (Novagen). Treated bacteria were concentrated by centrifugation (18,000 x g for 15 min), washed in 20 mM Tris (pH 8), lysozyme treated (0.1 mg/ml for 1 h), and disrupted by sonication. The particulate fraction and supernatant were separated by centrifugation (39,000 x g for 20 min), and the former was solubilized in 4% OG/20 mM Tris (pH 8)/100 mM NaCl. After centrifugation to remove residual particulates, the solubilized product was diluted 4-fold in 20 mM Tris (pH 8), bound to Talon Metal Affinity Resin (Clontech Laboratories, Palo Alto, CA), washed with 1% OG/20 mM Tris/25 mM NaCl, and finally eluted using 1% OG/20 mM Tris/100 mM imidazole (pH 8). Ag-rich fractions identified by SDS-PAGE, were pooled, dialyzed extensively in water to remove detergent, and equilibrated in PBS for bioassay or with 20 mM Tris (pH 8) for protease treatment. Despite its low m.w., t-lemA could be fully recovered after dialysis, presumably because of self-aggregation of the hydrophobic molecule in an aqueous environment.
We used 16.5% polyacrylamide gels equilibrated in SDS/Tris/tricine buffer with polypeptide m.w. standards (Bio-Rad, Hercules, CA) and Gelcode Blue stain (Pierce, Rockford, IL) to estimate t-lemA size and monitor its purity. Protein concentrations were measured after Ag solubilization in SDS using the micro-bicinchoninic acid (BCA) assay reagent (Pierce). To screen for the presence of lipids, varying amounts of Ag were spotted on silica gel TLC plates along with defined amounts of phosphatidyl ethanolamine, cardiolipin, and a mixture of phospholipid standards. Ag and standards were chromatographed using a moving phase mixture of chloroform, methanol, water, and acetic acid (25:15:4:2). After drying, the plates were sprayed with phosphomolybdic acid and heated to 110°C to visualize lipid/phospholipid bands.
For selected studies, t-lemA-transfected bacteria were grown in LB medium supplemented with 5 µCi/ml [35S]methionine (Amersham Pharmacia Biotech, Piscataway, NJ). The resulting labeled t-lemA product was purified as described above, and then subjected to bioassay and protease treatment in the usual manner.
Cell culture
All cell lines were maintained in RPMI 1640 supplemented with 10% FCS, 1 mM L-glutamine, 200 U/ml penicillin, 200 µg/ml streptomycin, and 50 µM 2-ME (R10).
The f-MIGWII-specific, H2 M3wt -restricted CD8 cell line CN.8 was maintained by weekly restimulation with heat-killed LM, irradiated splenocytes, and recombinant IL-2 as described previously (7, 17). To prepare macrophages, bone marrow from the femurs of B6 or TAP-deficient mice was incubated in vitro for at least 57 days in 100-mm petri dishes containing R10 supplemented with 10% L929-conditioned medium (21). Macrophages harvested from these plates by gentle washing were plated in 96-well flat-bottom microtiter plates at 3.5 x 104/well for use in bioassays.
Fibroblast cell line L929 was obtained from American Type Culture Collection (Rockville, MD). LKb,L929 cells transfected with H2Kb (22), and B3Z, an OVA-specific T cell hybridoma, which produces ß-galactosidase in response to the peptide SIINFEKL presented by H2Kb (23), were provided by J. Yewdell and J. Bennink (National Institute of Allergy and Infectious Disease, Bethesda, MD). B10.CAS2 (H2 M3cas2) and CM3, a B10.CAS2 fibroblast line transfected with H2 M3wt (24, 25), were provided by K. Fischer Lindahl (University of Texas Southwestern Medical Center, Dallas, TX). 13S2, a B10.CAS2 cell line transfected with a chimeric class I MHC molecule coding the first and second domains of H2 M3wt and the third domain derived from Ld (26), was provided by S. Shawar and R. Rich (Baylor Medical Center, Houston, TX).
Osmotic loading
A hyperosmolar buffer containing RPMI 1640 medium supplemented with 10% polyethylene glycol 1000, 0.5 M sucrose, and 10 mM HEPES (pH 7.2) was prepared as described previously (27). LKb cells were incubated in this buffer supplemented with OVA or t-lemA for 10 min at 37°C. Cells were then washed twice with complete medium and incubated for 6 h at 37°C. Control cells were incubated with Ag in isotonic buffer. Ag presentation by treated cells was then assayed using the standard methods described below.
In the original description of osmotic loading of Ags, Moore et al. (27) exposed loaded cells to hypotonic media for 5 min to enhance osmotic disruption . In our preliminary studies using OVA presentation as a model, we found this step markedly decreased LKb viability without increasing Ag presentation. Therefore, it was deleted from our loading protocol.
Quantitation of t-lemA presentation to CN.8
Macrophage or fibroblast monolayers (3.5 x 104/well in flat-bottom 96-well plates) were preincubated with varying quantities of purified t-lemA or medium alone for 6 h at 37°C. CN.8 cells (1 x 105/well) were then added, and lysis was quantitated 6 h later using the neutral red uptake method (11). The results were expressed in percent lysis of macrophages or fibroblast monolayers. All findings presented were confirmed in at least three independent experiments.
In studies assessing the impact of metabolic inhibitors, target monolayers were pretreated with each inhibitor for 30 min before the addition of Ag. Six hours later, inhibitors and Ag were washed away, and lysis by CN.8 was quantitated as described above in the presence of brefeldin (0.5 µg/ml) to prevent "breakthrough" processing after removal of the inhibitors during the lysis phase of the assay.
Quantitation of OVA presentation to B3Z
Varying numbers of LKb pretreated with OVA and/or hypertonic medium as described above were incubated with 1 x 105 B3Z cells overnight in microtiter wells. ß-Galactosidase production by B3Z was then measured spectrophotometrically at 570 nm after the addition of 0.15 mM chlorophenol red ß-D-galactopyranoside in PBS/0.5% Nonidet P-40 (23).
PK treatment of f-MIGWII and t-lemA
To assess protease sensitivity, f-MIGWII and t-lemA, adjusted to 20 µg/ml, were incubated at defined substrate to protease ratios (w/w) with PK in a buffer containing 20 mM Tris (pH 8) and 1 mM CaCl2 for 18 h at 37°C (17). The protease-treated and control f-MIGWII preparations were bioassayed directly at 1/50050,000 dilutions. Because t-lemA preparations could not be diluted as extensively for bioassay, they were treated with 1 mM PMSF to inactivate PK and then dialyzed to remove Tris and PMSF before bioassay. In studies addressing the impact of PK on construct size, [35S]methionine-labeled t-lemA preparations were incubated with varying amounts of PK, and the resulting mixture was analyzed by SDS using Gelcode blue staining to define the pattern of protein fragmentation. A phosphor imager (Fuji Imaging, Tokyo, Japan) was used to assess the size and quantity of 35S-labeled fragments on the same gel.
| Results |
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After IPTG treatment, transformed BL21(DE3) bacteria produced a
recombinant product, which could be detected in bacterial lysates using
SDS-PAGE (Fig. 1
). Detectable amounts of
this band were not present in culture supernatants (data not shown).
After bacterial sonication, t-lemA remained with the particulate
fraction, but it could be solubilized using OG and purified to near
homogeneity by metal chelation affinity chromatography (Fig. 1
, lane C) with a yield of 23 mg/L of bacterial culture.
After dialysis to remove detergent, purified t-lemA formed a
microparticulate suspension in water. Using TLC with phosphomolybdic
acid staining, we could detect no residual phospholipid contamination
of this product with a sensitivity of <0.1 µg phospholipid/µg
t-lemA.
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CN.8 lysed t-lemA-treated B6 macrophages and L929
fibroblasts in a dose-dependent manner. Half-maximal lysis of the
former required 10 nM t-lemA;
10-fold more Ag was required to
produce comparable lysis of fibroblasts. The immunogenic peptide
f-MIGWII, by comparison, produced lysis at considerably lower
concentrations (Fig. 2
). CN.8 also lysed
the H2 M3wt-positive fibroblast line CM3, but not
B10.CAS2 fibroblasts expressing only H2 M3cas2
(data not shown), confirming that Ag recognition is H2
M3wt dependent.
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We have shown previously that native lemA presentation by
macrophages is inhibited by chloroquine, ammonium chloride, pepstatin,
and brefeldin (11). Processing of t-lemA by macrophages
and fibroblasts was also inhibited by each of these agents (Fig. 3
, A and C).
Because f-MIGWII presentation is unaffected by chloroquine, ammonium
chloride, pepstatin, and only modestly inhibited by brefeldin (Fig. 3
, B and D), t-lemA bioactivity cannot be attributed
to inadvertent contamination with this entity. To assess the possible
influence of the
3 domain of H2 M3wt in
shaping t-lemA processing, we tested the function of 13S2, a B10.CAS2
fibroblast cell line transfected with a chimeric H2
M3wt molecule bearing
1 and
2 domains from
H2 M3wt and an
3 domain derived from
H2Ld. Like cells expressing the native H2
M3wt molecule, 13S2 presented exogenous t-lemA
(but not f-MIGWII) in a pepstatin-sensitive manner (Fig. 3
, E and F).
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The H2Kb-restricted presentation of
exogenous OVA by nonprofessional APC is critically limited by the
failure of this product to gain access to the cytoplasm. Osmotic
loading, which facilitates the transfer of ingested proteins into the
cytoplasm, dramatically increases OVA presentation in this setting
(28). As expected, this maneuver enhanced OVA presentation
by LKb fibroblasts (Fig. 5
A). The same procedure
however, did not affect lemA presentation (Fig. 5
B).
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Although the pepstatin sensitivity of processing observed in Fig. 3
implies t-lemA must undergo proteolytic cleavage within APC, like
native lemA (17), it is very resistant to proteolytic
degradation in vitro. Indeed, bioactivity was enhanced by PK treatment,
with or without 1% SDS (Fig. 7
B). This protease resistance
is not intrinsic to the f-MIGWII sequence itself, since its bioactivity
is totally lost after incubation at comparable protein to enzyme ratios
(Fig. 7
A).
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3.5 to 4.5
kDa (Fig. 8
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| Discussion |
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In the native lemA molecule, the localization of the f-MIGWII sequence immediately in front of a hydrophobic sequence (from positions 7 to 26) and several cationic amino acids (at position 27, 29, and 31) strongly influences the biosynthesis and localization of the final product. Lacking a leader sequence or a consensus signal peptidase cleavage site, the amino-terminal portion of the molecule presumably remains intact after biosynthesis (5), and based on precedent from other bacterial proteins, probably forms a membrane-spanning domain with an Nout-Cin topology (37). By physically transporting the amino terminus away from cytoplasmic deformylases and proteases, localization of the immunogenic N terminus on the outer side of the bacterial membrane may be critical in preserving the N-formyl group characteristic of lemA (18). More relevant to the issue of processing, Lenz and Bevan (5) have speculated that the exogenous presentation of lemA might be critically linked to the vulnerability of the exposed amino terminus of ingested bacteria to release by endosomal proteases . Untethered from the bacterial surface, the resulting fragments might then bind to H2 M3wt in a TAP-independent manner within the endosomal compartment.
Although this proposal is a priori plausible, the current studies
demonstrate that processing is not linked to any specific orientation
of lemA within the bacterial membrane. Recombinant t-lemA retained the
identical pattern of processing (chloroquine, ammonium chloride,
pepstatin, and brefeldin sensitivity, and TAP independence) noted in
earlier studies using crude bacterial preparations (5, 11), despite disruption of native spatial orientation and
separation of the purified molecule from other bacterial components.
More important, presentation cannot be explained simply by facile
cleavage of f-MIGWII from lemA. To the contrary, in the context of the
t-lemA molecule, the proteolytic release of an immunogenic fragment is
not easily achieved (Fig. 9
).
We speculated previously, based on studies using a relatively crude LM extract, that this protease resistance might reflect steric protection of the molecule by closely associated phospholipid (7). This explanation now seems unlikely since affinity-purified t-lemA is free of stoichiometrically significant quantities of these substances. Protease resistance is not simply a consequence of poor solubility, since Ag remained resistant to degradation even after solubilization in 1% SDS, a maneuver that increases the proteolytic sensitivity of many peptide products. Because the smallest fragments generated by PK are about 30 amino acids in length, we suggest this protease resistance reflects the hydrophobicity of the first 25 amino acids. Presumably, hydrophobic interactions within this core region impedes initiation of proteolysis at the amino terminus or further stepwise cleavage from the other end. It is impressive that despite this protease resistance in vitro, t-lemA can be effectively degraded into immunogenic fragments within APC. Because this processing can be inhibited by pepstatin, it presumably is mediated at least in part by cathepsin D, an enzyme also linked to the processing of peptides for presentation to class II MHC products (38).
Numerous previous studies, recently reviewed by Jondal et al. (12), have documented TAP-independent, class I MHC product-restricted presentation of exogenous Ags. This phenomenon has been observed in studies of Ags associated with intact bacteria or latex beads (39); with viruses including hepatitis B virus (40), Sendai virus (41), lymphocytic choriomeningitis virus, and vesicular stomatitis virus (42); and with peptides bound to heat shock proteins (43). In some cases, presentation is only observed using professional APC, but nonprofessional APC such as T2 and RMA-s cells also possess the machinery for processing some of these Ags. Although the sensitivity of these models to lysosomotrophic amines and/or inhibitors of endosomal protease activity is variable, presentation has typically been brefeldin independent, implying peptide binding to a pre-existent, recycling pool of Ag-presenting molecules. Indeed, in several of these models, there is strong evidence for binding to class I MHC molecules recycling from the cell surface (39, 44) or even direct binding of regurgitated peptide molecules to surface MHC molecules (34, 45). Although the pool of recycling molecules can be modestly reduced by brefeldin treatment (39), the particular sensitivity of lemA processing to low doses of brefeldin noted here distinguishes it from prior examples of extracytoplasmic processing and presentation.
Because little is known about how newly synthesized H2
M3wt moves within the cell after export from the
Golgi apparatus, the brefeldin sensitivity of t-lemA presentation could
reflect specialized trafficking of this MHC product to an endosomal
site adapted for peptide loading; however, this is unlikely. Directed
intracellular trafficking of CD1, a ß-2 microglobulin-linked molecule
known to undergo peptide loading in the endosomal compartment, is
critically linked with the presence of a YXXZ peptide motif in its
cytoplasmic tail (46). H2 M3wt has a
truncated (8-amino acid) cytoplasmic tail lacking such a sequence
(4, 47). Furthermore, the current studies demonstrate that
chimeric molecules expressing the
3 domain of
H2Ld (a classical molecule which is not known to
traffic extensively in the endosomal compartment) retain the capacity
to present lemA in a similar manner.
The brefeldin sensitivity of lemA presentation could also reflect distinctive trafficking of t-lemA itself. In light of its unusual protease resistance, the generation of immunogenic peptides may not be completed until the Ag has entered into a relatively late endosomal site. If recycling surface MHC molecules do not readily enter this compartment, Ag reaching this "point of no return" might only be presented if it gains access to a newly exported (brefeldin-sensitive) pool of H2 M3wt within the endosomal vesicle itself or some other internal compartment. Alternatively, brefeldin might interfere with presentation by inhibiting the transport of H2 M3wt-f-MIGWII complexes formed deep within the cell back to the cell surface (48). Although the brefeldin sensitivity strongly suggests peptide is not being bound to a rapidly recycling population of surface-derived H2 M3wt molecules, additional studies will be needed to define how and where t-lemA-derived immunogenic fragments gain access to H2 M3wt within the cell.
Independent of its significance in shaping intracellular processing within APC, the protease resistance of t-lemA may significantly affect its pharmacologic stability in vivo. Short peptide Ags are highly bioactive, but potentially very vulnerable to degradation by environmental proteases. On the other hand, intact proteins often are more protease resistant, but may be processed very inefficiently as exogenous Ags. Hydrophobic particulate protein Ags like t-lemA could be a relatively stable but potent immunogens in vivo. In future studies, it will be of interest to assess whether t-lemA can also stimulate the generation of immune effectors in vivo and whether the scaffolding provided by the lemA sequence from 7 to 33 can favorably alter the processing and protease sensitivity of other immunogenic peptides. If so, it may be possible to rationally exploit the properties of lemA in other settings. Chimeric products might be useful Ags in inducing CD8 responses in sites such as mucosal surfaces where there may be high proteolytic activity.
| Acknowledgments |
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| Footnotes |
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2 Abbreviations used in this paper: LM, Listeria monocytogenes; t-lemA, a truncated construct containing the first 33 amino acids from the listerial product lemA; PK, proteinase K; IPTG, isopropyl ß-D-thiogalactopyranoside; OG, n-octylglucoside. ![]()
Received for publication May 10, 1999. Accepted for publication September 23, 1999.
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