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-Chain Repertoire in pT
-Deficient Mice Is Diverse and Developmentally Regulated: Implications for Pre-TCR Functions and TCRA Gene Rearrangement1


*
Laboratoire dImmunochimie, Commissariat à lEnergie Atomique-Grenoble, Département de Biologie Moléculaire et Structurale, Institut National de la Santé et de la Recherche Médicale Unit 238, Université Joseph Fourier, Grenoble, France;
Basel Institute for Immunology, Basel, Switzerland; and
Institut Necker, Institut National de la Santé et de la Recherche Médicale Unit 373, Paris, France
| Abstract |
|---|
|
|
|---|
-deficient mice, a substantial
number of
ß+ thymocytes are still produced, in part
because early TCR
-chain expression can rescue immature thymocytes
from cell death. In this study, the nature of these TCR
-chains,
produced and expressed in the absence of pre-TCR expression, have been
analyzed. We show, by FACS analysis and sequencing of rearranged
transcripts, that the TCRA repertoire is diverse in
pT
-/- mice and that the developmental regulation of AJ
segment use is maintained, yet slightly delayed around birth when
compared with wild-type mice. We also found that T cell differentiation
is more affected by pT
inactivation during late gestation than later
in life. These data suggest that the pre-TCR is not functionally
required for the initiation and regulation of TCRA gene rearrangement
and that fetal thymocytes are more dependent than adult cells on
pT
-derived signals for their differentiation. | Introduction |
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|
|
|---|
ß. They are then selected according to their TCR specificity
and differentiate into single positive (SP) CD4+
and SP CD8+ thymocytes that will ultimately exit
the thymus and seed the periphery. Although TCR-
ß expression is
first detected on DP thymocytes, TCRB locus rearrangement is initiated
earlier, at the
CD44+25+
CD44-25+
transition. Essentially all the DP thymocytes express a TCR ß-chain,
despite the fact that V(D)J recombination generates out-of-frame
junctions at a high frequency (66%) (2). The enrichment
for in-frame rearrangements in DP thymocytes reflects the existence of
a checkpoint called ß selection, whereby only cells able to express a
rearranged TCR ß-chain as part of a pre-TCR complex are allowed to
further differentiate (3).
The pre-TCR is composed of the TCR ß-chain covalently linked to the
invariant pT
chain and noncovalently associated with the CD3 complex
(4, 5, 6, 7). Pre-TCR expression on developing
CD44-25+ thymocytes
results in their differentiation through the
CD44-25- stage to the DP
compartment, a burst of proliferation (3, 8), and may
facilitate
ß lineage commitment (3, 9). At the DNA
level, pre-TCR expression induces the cessation of TCRB gene
recombination (allelic exclusion) (10, 11, 12). Finally,
pre-TCR expression and ß selection correlate with massive initiation
of TCRA gene rearrangement (13). Mice unable to rearrange
and/or express a TCR ß-chain (14) exhibit profoundly
impaired DN
DP transition and severe thymic hypocellularity because
of their inability to express a pre-TCR. Inactivation of the pT
chain also leads to a dramatic reduction of
ß+ thymocyte differentiation (15, 16). Only very low numbers of TCR
ß+
DP and SP thymocytes are produced in the thymus of
pT
-/- animals. They are rescued from cell
death either because early rearrangement of TCRA genes allows
expression of an
ß heterodimer that can replace the pre-TCR, or
under the influence of TCR
+ thymocytes
(17). Thus, whereas in normal mice most TCRA
rearrangements take place after pre-TCR expression, it seems that in
pT
-/- mice, TCRA rearrangement in DN cells
is required to generate TCR
ß-expressing thymocytes.
TCRADV genes can rearrange with any one of 61 AJ segments (18). Southern blot analysis of TCRA rearrangements in T cell hybridomas produced from fetal and adult thymocytes revealed the existence of two hot spots (HS) for recombination within the AJ region. HS1 contains segments from AJ61 to AJ48, and HS2 contains segments from AJ31 to AJ22 (19, 20). These HSs may represent two entry points used early and late during development, respectively. Sequence analysis of TCRA rearrangements expressed at different times of development further showed that not only AJ but also ADV gene segment utilization evolves with time (21). Because in normal mice the majority of TCRA rearrangements are initiated just after pre-TCR expression, we hypothesized that the pre-TCR may be implicated in the progressive and ordered utilization of the ADV and AJ segments during development.
In this study, we analyzed the TCRA repertoire expressed in
pT
-deficient mice, both by FACS analysis and at the molecular level,
to know whether thymocytes differentiating without pre-TCR expression
use a special repertoire of TCR
-chains or whether TCRA gene
rearrangements in DN thymocytes are similar to those found in wild-type
animals. Our results show that pT
-/- mice
have a diverse repertoire of TCRA rearrangements and that the pre-TCR
is not required for the entire TCRAD locus to be accessible to VDJ
recombinase. Furthermore, the regulated utilization of AJ segments
found in wild-type thymocytes is maintained in
pT
-/- animals, although slightly delayed.
This delay may be related to a more severe impairment of DP thymocyte
generation during gestation than later in life in the absence of pT
expression. As a whole, these results suggest that the pre-TCR
functions in cellular expansion, allelic exclusion, and possibly
TCR
ß lymphocyte lineage commitment, but is dispensable for the
initiation and the regulation of TCRA gene rearrangement.
| Materials and Methods |
|---|
|
|
|---|
pT
-/ - mice on a C57BL/6 background
(15) and C57BL/6 mice (purchased from IFFA CREDO,
LArbresle, France) were maintained in the animal facilities of the
Commissariat à lEnergie Atomique (Grenoble, France).
pT
-deficient mice had been backcrossed on C57BL/6 background for
eight generations at the beginning of the study. Detection of the
vaginal plug was considered as day 1 of gestation.
Abs and FACS analysis
The following Abs were used for staining: FITC-conjugated
anti-V
2 (B20.1), anti-V
3 (RR3-16), anti-V
8
(B21.14) and anti-V
11 (RR8-1), PE-conjugated anti-CD4
(GK1.5), Cy-Chrome-conjugated anti-CD8 (53-6.7), biotin-conjugated
anti-TCR-ß (H57-597). All the Abs and Cy-Chrome-conjugated
streptavidin were from PharMingen (San Diego, CA).
Single-cell suspensions of fetal day 16, fetal day 18, day 1, and day 28 thymocytes were prepared in PBS/3% FCS/0.16% NaN3. Cells were incubated for 15 min at room temperature with saturating concentration of the indicated Abs in the same medium, washed in PBS, and analyzed on a FACScalibur (Becton Dickinson, Pont de Claix, France) with CellQuest software. Before staining, cells were incubated with saturating concentration of anti-Fc receptor (Fc Block, PharMingen) to reduce nonspecific binding.
RNA isolation and RT-PCR
Thymocytes were isolated at day 18 of fetal life and 1 day and
28 days after birth. Two pools of fetal thymic lobes (for day 18 of
gestation) or two thymi (for days 1 and 28) were analyzed
independently. Total RNA and cDNA were prepared as described
(22). Two consecutive nested PCR were conducted for each
cDNA sample, with an equimolar mix of NW36, NW37, and NW38 (0.2 µM
final) and C
3 in the first round, followed by a second round using
NW primers and C
1 (Table I
; Ref.
23). To facilitate cloning, SphI and
EcoRI sites have been introduced into NW and C
1 primers,
respectively. The conditions for the first PCR reaction were 5 min at
94°C followed by 5 cycles consisting of 30 s at 94°C, 30
s at 45°C, and 30 s at 72°C, 30 cycles consisting of 30 s
at 94°C, 30 s at 50°C, and 30 s at 72°C, and finally 10
min at 72°C. The conditions for the second PCR reaction were 5 min at
94°C followed by 35 cycles consisting of 30 s at 94°C, 30
s at 50°C, and 30 s at 72°C, and 10 min at 72°C.
|
The PCR products were cloned in the EcoRI and
SphI sites of pBlueScribe KS- (Stratagene, La Jolla, CA),
which was then used to transform TG1 competent bacteria. Positive
clones obtained from pT
-/- and C57BL/6
thymus at days 1 and 28 were sequenced with the use of the Thermo
Sequenase premixed cycle sequencing kit (Amersham, Les Ulis, France)
and analyzed on a Vistra 725 DNA Sequencer (Vistra Systems, Molecular
Dynamics, Bondoufle, France). For clones from day 18 fetal thymus,
plasmids were prepared using the Wizard Plus Minipreps DNA Purification
System (Promega, Charbonnières, France) and then sequenced by
Genome Express (Grenoble, France). AJ gene segments were identified by
comparison with the published sequences (18), and ADV gene
segments were identified by comparison with genes contained in GenBank
using BLAST 1.4.11 software. Pearsons test was used to compare ADV
gene utilization in pT
-/- and control mice.
To compare AJ gene utilization in the different samples analyzed, the
median value of AJ segment distribution was calculated, and AJ
distributions in each population were compared by a Mann-Whitney
nonparametric test. Statistical analyses were performed using SPSS6.0
software (SPSS, Chicago, IL).
| Results |
|---|
|
|
|---|
expression
As a preliminary estimation of the TCRA repertoire diversity in
pT
-/- mice, we analyzed by flow cytometry
the expression of ADV2, ADV3, ADV8, and ADV11 gene families on the
surface of TCR-
ß+ thymocytes and peripheral
T lymphocytes in 4-wk-old animals. As can be seen in Fig. 1
, these 4 gene families are expressed at
similar levels in pT
-/- and age-matched
C57BL/6 animals, both in the thymus and in lymph nodes. Although these
results suggest that the repertoire of expressed TCR
-chains in
pT
-deficient mice does not differ significantly from that of
wild-type animals, FACS analysis cannot rule out the possibility that
oligoclonal TCRA rearrangements account for the observed level of
expression.Thus, to further investigate the complexity of the TCR
-chain repertoire in pT
-/- mice,
rearranged TCRA transcripts were amplified by RT-PCR from total
thymocytes isolated during late gestation (day 18 of fetal life), at
birth (<24 h, day 1), and at 4 wk of age (day 28). Amplifications were
performed with a mix of degenerate oligonucleotides designed to amplify
multiple ADV genes (23) and an AC-specific primer, as
described in Materials and Methods. PCR products were then
cloned and sequenced to identify the ADV and AJ segments encoding the
TCR
-chain variable region. Table II
summarizes all the ADV genes identified in
pT
-/- and B6 mice during the course of this
analysis. The degenerate primers clearly preferentially amplify members
of the ADV3, ADV10, and ADV11 families in both types of mice.
Altogether, 17 different genes (belonging to 5 families) were
identified in 81 TCRA rearrangements sequenced from
pT
-/- thymocytes, compared with 22 different
genes (belonging to 7 families) for 92 rearrangements in corresponding
C57BL/6 samples. No statistically significant differences were found
when use of ADV3, ADV10, or ADV11 family members in
pT
-/- and wt sequences were compared.
Sequencing showed that ADV-AJ junctions are diversified in both type of
mice, eliminating the hypothesis that TCRA rearrangements in
pT
-deficient mice are only oligoclonal. Sequencing finally showed
that the percentages of out-of-frame junctions and the distribution of
CDR3 lengths were similar in pT
-/- and
wild-type animals (Table III
).
|
|
|
-chain in pT
-deficient mice are
as diverse as in C57BL/6 mice. These ADV genes are rearranged with a
large panel of different AJ segments, distributed on the entirety of
the 65-kb-long AJ region, with no restriction regarding their position
within this region (Fig. 2
, the AJ region is completely accessible
for rearrangement. Altogether, our results show that in spite of the
absence of pre-TCR expression, the level of complexity of TCRA
rearrangement is similar in pT
-/- and
wild-type mice.
|
-/- mice
Having established that the TCR
-chain repertoire is diverse in
pT
-/- mice, we next wanted to know whether
AJ segment use was still developmentally regulated in the absence of
pT
. We therefore compared the pattern of AJ use in productive TCRA
gene rearrangements at the different time points analyzed. A graphic
representation of this analysis is shown in Fig. 3
.
|
-/- mice, the
situation is somewhat different. At day 18 of gestation, AJ segments
are spread from AJ58 to AJ13. About one-third (5 of 16) are located in
or downstream of HS2. At birth, the rearrangements now involve AJ
segments from AJ56 to AJ23, located mainly upstream of HS2, giving an
overall pattern similar to that of C57BL/6 thymocytes at day 18 of
gestation. At 4 wk, we observe a widening of the set of AJ segments
used, as in age-matched B6 mice. Despite the wider use of AJ segments
at day 18 than at day 1 (AJ58 to AJ13 vs AJ56 to AJ23, respectively),
these distributions are not significantly different
(p > 0.05), and both have their median point
located at AJ39. However, differences in AJ distributions were
statistically significant between day 1 and 4 wk of age
(p = 0.048), with a shift of the median point
from AJ39 to AJ31, respectively. Thus, as in wild-type mice, AJ use is
developmentally regulated, increasing with age, in
pT
-/- mice, but this program seems to be
delayed in the absence of the pT
chain, starting only after birth
rather than during late gestation.
T cell development in pT
-/- and wild-type mice
The delay in AJ utilization in pT
-deficient mice prompted us to
analyze and compare the kinetics of T cell differentiation in fetal and
adult pT
-/- and wt mice (Fig. 4
). At day 16 of gestation, similar
numbers of thymocytes were recovered from
pT
-/- and wt mice (
2.2 x
105), all of them
CD4-8- (Fig. 4
, A and E). Thus, pT
inactivation seems to have
no effect on T cell differentiation until at least day 16 of fetal
life, as judged by FACS analysis and cellularity, even if it was shown
that TCR-ß and pT
transcripts are present as early as day 15 of
gestation (25, 26) and that a pre-TCR can potentially be
expressed on a fraction of DN
CD44+25+ thymocytes
(27). However, we were unable to amplify rearranged TCRA
transcripts from 6 independent cDNA preparations of fetal day 16
pT
-/- thymocytes in two successive nested
PCR reactions, whereas they were easily detected, in one round of
amplification, in two of four cDNA preparations of age-matched control
thymocytes. These results suggest that TCRA gene rearrangement is
already affected at that early stage of development.
|
inactivation on T cell differentiation becomes
evident 2 days later. At day 18 of gestation, thymic cellularity is
reduced 2.5-fold on average in pT
-deficient mice, and, more
importantly, the percentage of
CD4+8+ cells is decreased
11 times (4.0% vs 43.6%) when compared with age-matched control mice
(Fig. 4
inactivation has a more profound effect on DP thymocyte
differentiation during late gestation than later in life. This
differential effect of pT
inactivation on fetal vs adult T cell
development may then explain the slower regulation of AJ segment use
observed in pT
-deficient mice around birth. | Discussion |
|---|
|
|
|---|
-/- mice at different developmental
stages. Despite the inactivation of the pT
chain, DP and SP
thymocytes are nonetheless generated in these animals, either because
early rearrangement and expression of TCRA genes allow the cells to
progress beyond the
CD44-25+ stage of
differentiation, or under the influence of
TCR-
+ thymocytes (17).
Alternatively, DP thymocytes can also be generated in pT
-deficient
mice through
selection (28) or by the expression of a

TCR (29). In pT
-/- x
TCR-
-/- double-deficient mice, nearly all DP
and SP thymocytes have been ß selected; whereas in
pT
-/- x TCR
-/-
double-deficient animals, no evidence of ß selection could be found
in DP thymocytes (17). Thus, TCR
-chain expression is
required for ß selection in the absence of pT
. These findings
exclude the possibility that thymocyte development in
pT
-/- mice results from the expression of an
" incomplete " pre-TCR that would comprise only a TCR ß-chain and
the CD3 complex, because expression of such a structure would result in
at least some degree of ß selection in
pT
-/- x TCR
-/-
double-deficient animals. TCRA rearrangements in
pT
-/- mice can have any of three origins.
They can originate either from
ß- or 
-expressing thymocytes.
Furthermore, in
ß lineage, even though it is clear that some of
them have been generated during the DN stages of differentiation, we
cannot exclude that a low level of TCRA gene rearrangement is induced
during the DN to DP transition driven by 
+
thymocytes even in the absence of ß selection (17) or in
DP thymocytes generated through
and/or
selection (28, 29). Regardless of their origin, TCRA rearrangements analyzed in
our study are generated in the absence of any pre-TCR signaling,
whereas in wild-type mice, most of the rearrangements are initiated
after pre-TCR expression. Therefore, it was of interest to determine
whether TCRA rearrangements present in pT
-deficient mice exhibit a
special pattern, and how they are regulated.
ADV genes belonging to different families as well as multiple members
of a same family were identified in TCRA transcripts amplified from
pT
-deficient thymocytes. Although the exact physical map of the
C57BL/6 TCRAD locus is currently unknown, it probably evolved through
successive duplications of more or less conserved blocks encompassing
several ADV genes belonging to different families, as the BALB/c TCRAD
locus (30, 31). Therefore, it is likely that the different
ADV3, ADV10, and ADV11 family members identified in
pT
-/- mice are not clustered together but
are interspersed with other ADV genes belonging to different families
and widely spread within the TCRADV region. Our results therefore
suggest that most of this region is accessible for VDJ recombination
and used in pT
-/- mice. These ADV genes were
rearranged with a wide array of AJ segments, encompassing most of the
AJ region. Formally, we cannot rule out that TCRA rearrangements in
pT
-deficient mice are initially limited to a small number of
thymocytes and that this "initial" repertoire is then diversified
by cellular expansion and secondary ADV-AJ recombination. However, in
that case, one would expect an underrepresentation of ADV-proximal AJ
genes caused by secondary rearrangements, and this is clearly not the
case in our pT
-/- samples (Fig. 3
).
Altogether, these findings indicate that in
pT
-/- mice, the TCRAD locus is widely if not
completely open and accessible for rearrangements and that the
expressed TCRA repertoire is diversified and shows no signs of
restriction. Therefore, pre-TCR signaling is required neither to confer
accessibility to the TCRAD locus nor to generate a diverse repertoire
of TCRA gene rearrangements. However, one must not forget that pre-TCR
expression results in sustained thymocyte proliferation and selects
cells that have successfully rearranged their TCRB genes. Hence, the
pre-TCR participates in increasing
ß+
lymphocyte diversity and makes T cell differentiation more efficient,
by generating a large number of thymocytes that have already succeeded
in rearranging their TCRB genes and are capable of rearranging their
TCRA genes.
We recently showed during a comprehensive study of TCRADV2 gene
rearrangements in BALB/c thymocytes that use of AJ segments changes
during development (21). The present study shows that AJ
use is similarly regulated from day 18 of gestation to 4 wk of age in
C57BL/6 mice, even if the AJ segments considered here are rearranged
with a wide array of different ADV genes. In
pT
-/- mice, we found that evolution of the
distribution of AJ segments used over the same time frame is slower and
that the widening of AJ gene use starts only after birth, and not from
day 18 of gestation as in wild-type mice. This observation may be
related to our finding that late fetal thymocytes have a more stringent
requirement for pT
, and thus pre-TCR, derived signals for
development than their adult counterparts. One possible explanation for
this finding is that the alternate, pre-TCR independent mechanisms
driving DN to DP maturation, including early TCRA gene rearrangement
and expression, are not yet fully functional at that time, and it
is only around birth, when "adult type" precursors begin to develop
in the thymus, that these mechanisms are activated. Differences between
fetal and adult thymocyte development have been documented in many
instances. They have, for example, differential requirement for
p56lck (32) and the IL-7 receptor
-chain (33). These changes may also be related to
changes in the thymic microenvironment.
The delay in AJ use in pT
-/- mice could also
stem from the fact that DP thymocytes generated in the absence of a
pre-TCR do not pass through a phase of intense proliferation. Cell
cycle progression involves many different chromatin structure changes
that may be required to establish a proper control of accessibility of
TCRA genes in wild-type mice, i.e., open and close different regions of
the locus at different times. In addition, one must not forget that VDJ
recombination activity is also regulated throughout cell cycle
progression (34, 35). Therefore, in the absence of
chromatin remodeling and VDJ recombinase regulation during the cell
cycle, it is possible that the factors providing and/or controlling
accessibility of the TCRAD locus function more progressively, thereby
leading to a different (slower) regulation of accessibility of the
different domains of the TCR AJ region. Also, it has been shown that
CD3-mediated signals activate transcription of TCRA genes in immature
thymocytes (36). This transcription may in some as yet
undefined way influence the pattern of VDJ recombination at the TCRAD
locus.
Two non-mutually exclusive hypotheses can be proposed to explain that pre-TCR signaling is not necessary for developmental regulation of AJ segment use. The progressive opening of the TCRAD locus may be dependent on a cell autonomous mechanism related to the maturity of T cell precursors entering the thymus at different times. Alternatively, it could be the result of extracellular signals, delivered by thymic stroma by cell-cell interaction or by soluble mediators, independently of pre-TCR expression.
Collectively, our results show that the TCRA repertoire in
pT
-/- mice is limited only in terms of
cellularity and not in terms of diversity. These findings suggest that
the main functions of the pre-TCR are to promote TCRB allelic
exclusion, to increase thymocyte number, and probably to engage
thymocytes in the
ß+ lymphocyte lineage but
not to induce and control TCRA gene rearrangement. The requirements for
TCRA gene rearrangement are currently poorly defined. The T early
(TEA) element has been shown to play a role in the control of
accessibility of the first AJ segments (37). These
segments are rearranged in pT
-/- mice, and
we also found significant levels of TEA transcription (data not shown).
Thus, pre-TCR expression is also dispensable for this event. However,
different pre-TCR mutations are not equivalent in terms of their
influence on TCRA rearrangement; no ADV-AJ gene rearrangements were
found in CD3
-deficient mice (22, 38), whereas the
rearrangements are found in the absence of expression of the TCR
ß-chain (39). Therefore, even if the nature of the
molecular events leading to TCR
-chain expression remains to be
determined, it is likely that CD3
plays a role in their regulation,
maybe independently of its functions in a pre-TCR complex.
| Acknowledgments |
|---|
| Footnotes |
|---|
2 Address correspondence and reprint requests to Dr. Patrice N. Marche, Laboratoire dImmunochimie, Commissariat à lEnergie Atomique-Grenoble, Département de Biologie Moléculaire et Structurale, Institut National de la Santé et de la Recherche Médicale Unit 238, F-38054 Grenoble cedex 9, France. E-mail: ![]()
3 Abbreviations used in this paper: DN, double negative; DP, double positive; SP, single positive; HS, hot spot; TEA, T early
. ![]()
Received for publication February 25, 1999. Accepted for publication September 14, 1999.
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