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Laboratory of Molecular Genetics, National Institute on Aging, National Institutes of Health, Baltimore, MD 21224; and
Graduate Program in Immunology, Johns Hopkins University School of Medicine, Baltimore, MD 21205
| Abstract |
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Ox1 light chain genes. Although the frequency of
mutation in MLH1-deficient mice was twofold lower than in wt mice, the
pattern of mutation in Mlh1-/-
clones was similar to wt clones. These findings suggest that the MLH1
protein has no direct effect on the mutational
spectrum. | Introduction |
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10-8 mutations per base pair, and this
frequency increases several fold when mismatch repair proteins
are deficient 1, 2, 3, 4, 5 . The other mechanism is hypermutation, which is
unique to B cells and is caused by unknown enzymes. The frequency of
hypermutation is
10-2 mutations/base pair, and mutation
occurs in a 2-kb region around rearranged V genes (reviewed in 6 .
Recently, there has been a great deal of interest in studying
hypermutation in V genes from mice deficient in the mismatch repair
pathway 7, 8, 9, 10 . Studies from several labs have shown that mice
deficient for the MSH2 and PMS2 mismatch repair proteins have
hypermutation 11, 12, 13, 14, 15 ; this finding is in contrast to an earlier
report by Cascalho et al. 16 . The frequency of mutation in the
repair-deficient mice was either the same or several fold lower than in
wild-type (wt)2 mice,
depending upon the type of exposure to Ag. After deliberate exposure by
immunization with Ag, rearranged V
and V
genes from splenic B
cells from MSH2- and PMS2-deficient mice had the same frequencies of
mutation as repair-proficient mice (
1% mutations per base
pair) 11, 12, 13, 14 . After chronic exposure to environmental
gut-associated Ags, rearranged VH genes from Peyers patch
B cells from MSH2- and PMS2-deficient mice had a three- to fivefold
lower frequency of mutation compared with wt mice 14, 15 . The
diminished response in the chronically stimulated cells may be due to
early cell death before the V genes can undergo many rounds of mutation
14, 15 . Thus, a lack of DNA repair allows spontaneous mutations to
persist in the overall genome; consequently, when such mutations occur
in genes critical for cell survival, the cell dies.
The pattern of mutation from MSH2- and PMS2-deficient mice has also been examined. V genes from Msh2-/- mice had a greatly increased number of mutations at G and C nucleotides compared with A and T nucleotides 11, 12, 14, 15 . V genes from Pms2-/- mice had a greater number of tandem mutations, which was confirmed by the inability of Pms2-/- cell extracts to repair adjacent mutations on artificial substrates 13 . This altered spectrum of mutation in the mismatch repair-deficient mice compared with wt mice suggests that mismatch repair proteins remove some of the mutations before DNA replication. However, this process is inefficient, perhaps because the mismatch repair pathway is unable to deal with the excessively large number of mismatches generated by the hypermutation mechanism.
In addition to MSH2 and PMS2, other proteins such as MSH6 and MLH1
participate in the mismatch repair pathway, as shown in Fig. 1
. Because the absence of MSH2 and PMS2
produced different mutational spectra in V genes, these other proteins
may also be involved in removing mismatches generated during
hypermutation. For example,
Mlh1-/-,
Pms2-/-, and
Msh2-/- mice each have distinct
phenotypes for reproduction and tumors 5, 17, 18, 19, 20, 21 , and they may
possess different mutational patterns as well. Therefore, we examined
the role of one of the proteins, MLH1, in hypermutation. MLH1, along
with PMS2, binds to the MSH2-MSH6 protein complex that recognizes
base-base mismatches. MLH1-deficient mice are infertile because of
arrest at the pachytene stage of meiosis, have microsatellite
instability, and are susceptible to adenocarcinomas 5, 17, 18 . Mice
were immunized, and mutations in V genes were analyzed.
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| Materials and Methods |
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MLH1-deficient mice (obtained from R. M. Liskay, Portland, OR) were generated by insertion of an hprt minigene to replace a 2.5-kb fragment of exon 4 in Mlh1 17 . Four Mlh1-/- mice that had been bred onto a C57BL/6 and AB-129 background were given a primary i.p. injection of 50 µg of phenyloxazolone coupled to chicken serum albumin (a gift of C. Milstein, Cambridge, U.K.) in CFA. After 1 mo, the mice were administered a secondary injection of 50 µg of Ag in IFA. Mice were sacrificed after 4 days, and spleens were removed. B cells that bound to phycoerythrin-labeled B220 and fluorescein-labeled GL7 22 (PharMingen, San Diego, CA) as well as peanut agglutinin were isolated by flow cytometry.
DNA cloning and sequencing
DNA from
50,000 cells was isolated by proteinase K digestion
and phenol/chloroform extraction. The V
Ox1 gene segment rearranged
to the J
5 gene segment was amplified through 30 rounds of PCR with
Pfu polymerase (Stratagene, La Jolla, CA) using a
primer specific for the leader sequence on the 5' side of the gene and
a primer specific for the J
5 gene segment on the 3' side. Part of
the reaction (1/25th) was then subjected to another 30 rounds of PCR
using nested primers with restriction sites for cloning the amplified
product into M13 bacteriophage. DNA containing the ligated M13 vector
was transformed into JM101 bacteria by electroporation and immediately
poured onto agarose plates to obtain unique libraries. M13 plaques were
screened for inserts by hybridization to a V
Ox1 probe, and positive
clones were sequenced.
| Results and Discussion |
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Mutation was analyzed in a defined V gene, V
Ox1 23 , from
splenic B cells from immunized mice. Some 52 clones were sequenced for
466 bp, which included 190 nucleotides (nt) of 5' intron DNA between
the leader and V gene segment and 276 nt of coding region DNA.
Approximately 31 of 52 Mlh1-/-
clones (60%) had mutations. The same percentage of clones had
mutations in Mlh1+/+ C57BL/6 mice
13 . Of the mutated clones, 29 were distinct in that they either had
different sequences at the V-J junction or had unique substitutions
that were not shared by other clones. These clones are listed in Table I
in ascending order of mutations per
clone, ranging from 1 to 18. There were 90 base substitutions and 3
single nt insertions and deletions, giving an average frequency of
0.7% mutations/base pair. This frequency is comparable with the 0.9%
mutations/base pair observed in
Pms2-/- clones (Fig. 2
) but is lower than the 1.4%
mutations/base pair in C57BL/6 clones and the 1.3% mutations/base pair
in Msh2-/- clones 12, 13, 14 . The
twofold lower frequency in the
Mlh1-/- clones was due to a
predominance of sequences with less than four mutations, as was the
case for Pms2-/- clones 13 . As
proposed by Frey et al. 14 and Rada et al. 15 , mismatch
repair-deficient mice likely have chromosomal alterations because of a
lack of repair of spontaneous mutations in all the genes. This genomic
instability becomes fatal when it affects those genes that control
growth and division, so that rapidly dividing B cells die before an
accumulation of large numbers of mutations in their V genes. In support
of this hypothesis, Vora et al. 24 have recently reported that
Msh2-/- mice have smaller germinal
centers with more apoptosis than wt mice. The lower frequencies
of mutation in V genes from immunized MLH1- and PMS2-deficient mice
suggest that the absence of these two mismatch repair proteins is more
detrimental to B cell survival than the absence of MSH2.
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Ox1 genes
from Mlh1-/- mice is compared with
the distribution seen for C57BL/6,
Msh2-/-, and
Pms2-/- mice 12, 13 . There was an
accumulation of substitutions in the first complementarity-determining
region in each group. This is expected, because mutations in codons 34
and 36 have been shown to confer higher affinity for oxazolone, and B
cells expressing Abs with these mutations are preferentially selected
25 . Nucleotide substitutions in Mlh1-/- clones are similar to wt clones
The types of substitutions in different mismatch repair-deficient
mice are compared in Table II
. If
hypermutation occurs nondiscriminatingly on each nucleotide,
equal amounts of mutation should occur at A:T pairs compared with G:C
pairs. This was generally the case for V
Ox1 genes from C57BL/6,
Pms2-/-, and
Mlh1-/- mice. However, as reported
previously 11, 12, 14, 15 , most of the mutations in
Msh2-/- clones occurred at G and C
nucleotides. Thus, MSH2 behaves independently from PMS2 and MLH1 in
repairing mismatches generated by the hypermutation mechanism.
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Tandem mutations of two in a row were of particular interest,
because V
Ox1 genes from Pms2-/-
mice had a greatly increased frequency of adjacent mutations compared
with those from C57BL/6 and Msh2-/-
mice 12, 13 . Because the MLH1 protein pairs with PMS2 at the same
step in mismatch repair (Fig. 1
),
Mlh1-/- clones may also have more
tandem mutations. There were three tandem mutations in the
Mlh1-/- clones; these mutations are
underlined in Table I
. The observed numbers of tandems in each of the
repair-deficient strains are summarized in Table III
and compared with the expected
numbers. Expected numbers were calculated according to the probability
that two mutations will randomly occur next to each other in clones
with a length of 466 nt 13 . Only the
Pms2-/- clones had a significant
increase in tandem mutations (p <
10-6) as determined by exact Poisson calculations
regarding whether the observed and expected values were equal for each
group. This observation suggests that the PMS2 protein acts
independently of MLH1 in correcting adjacent mutations put in by the
hypermutation mechanism.
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Although MSH2, PMS2, and MLH1 are all required for mismatch repair, mice deficient in these proteins have distinct phenotypes for several biological mechanisms, suggesting that they can function independently. In the mechanisms of reproduction and recombination, MSH2-deficient male and female mice are fertile 19, 20 , PMS2-deficient males are sterile but females are fertile 21 , and MLH1-deficient males and females are sterile 17, 18 . The yeast equivalents of PMS2 and MSH2 also have different effects in suppressing meiotic and mitotic recombination 26, 27 . Thus, these three proteins have independent functions during the recombination of chromosomes. In the mechanism of tumor suppression, PMS2- and MSH2-deficient mice predominantly have lymphomas, whereas MLH1-deficient mice mostly have intestinal adenomas and adenocarcinomas 5, 19, 20, 21 . Furthermore, humans with hereditary nonpolyposis colorectal cancer have mutations predominantly in Msh2 and Mlh1 genes and rarely in Pms2 genes 28 . These different tumor spectra suggest that PMS2 and MLH1 have overlapping but nonidentical functions. In the mechanism of DNA repair, MSH2-deficient human cells cannot remove oxidative damage from the transcribed strand of DNA, whereas MLH1-deficient cells can remove the damage; this observation suggests a differential involvement of the two proteins in transcription-coupled repair 29 .
In the mechanism of hypermutation, we propose that MSH2, PMS2, and MLH1 proteins, although not required to generate or fix hypermutation in V genes, have independent functions for removing a portion of the mismatches. The altered spectrum of mutations in V genes from repair-deficient mice suggests that MSH2 removes mismatches at G and C nucleotides, PMS2 removes tandem mismatches, and MLH1 has no discernible effect. This different pattern of mutation suggests that the hypermutation mechanism frequently generates substitutions opposite G and C nucleotides and produces tandem mutations, which may occur during short-patch repair 30 .
| Acknowledgments |
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| Footnotes |
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2 Abbreviations used in this paper: wt, wild type; nt, nucleotide(s). ![]()
Received for publication November 24, 1998. Accepted for publication January 8, 1999.
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