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The Journal of Immunology, 1999, 162: 2671-2676.
Copyright © 1999 by The American Association of Immunologists

Soluble Class I MHC with ß2-Microglobulin Covalently Linked Peptides: Specific Binding to a T Cell Hybridoma1

Janice White*, Frances Crawford*, Daved Fremont{dagger}, Philippa Marrack*,{ddagger} and John Kappler2,*

* Division of Basic Immunology, Howard Hughes Medical Institute, National Jewish Medical and Research Center, Denver, CO 80206; {dagger} Department of Pathology, Center for Immunology, Washington University School of Medicine, St Louis, MO 63110; and {ddagger} Departments of Immunology and of Biochemistry, Biophysics and Genetics, and § Departments of Immunology, Pharmacology and Medicine, University of Colorado Health Science Center, Denver, CO 80262


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Soluble forms of the mouse MHC class I molecule, Dd, were produced in which the peptide binding groove was uniformly occupied by peptides attached via a covalent flexible peptide linker to the N terminus of the associated ß2-microglobulin. The MHC heavy chain and ß2-microglobulin were firmly associated, and the molecules displayed an Ab epitope requiring proper occupancy of the peptide binding groove. Soluble Dd containing a covalent version of a well-characterized Dd-binding peptide from HIV stimulated a T cell hybridoma specific for this combination. Furthermore, a tetravalent version of this molecule bound specifically with apparent high avidity to this hybridoma.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Soluble MHC molecules occupied uniformly by single peptides are very useful in both structural and biological studies of MHC function. Several expression systems have been developed to produce soluble MHC class I or class II molecules without a stably bound peptide that can subsequently be loaded with single peptides under the appropriate conditions, sometimes requiring refolding of denatured MHC molecules in the presence of the peptide 1, 2, 3, 4, 5 . These systems do not work well with all MHC/peptide combinations 5 .

As an alternative, we developed a method of attaching an antigenic peptide to the N terminus of the MHC class II ß-chain via a flexible peptide linker. The peptide fills the MHC binding groove during biosynthesis, leading to production of a stable molecule fully occupied by a single peptide. These molecules have been expressed by ourselves and others in both soluble and membrane associated forms 5, 6, 7, 8, 9, 10 . For the vast majority of {alpha}ßTCRs, these constructions are recognized equivalently to MHC molecules bearing noncovalently bound peptides, although an exception has been observed 11 .

Others have used a similar approach with MHC class I attaching the peptide via a flexible linker to the N terminus of the heavy chain 12 . Both membrane-bound and soluble forms of this construction have produced stable, functional MHC/peptide complexes. Most recently, a similar molecule with the peptide attached to the N terminus of ß2-microglobulin (ß2m)3 has been expressed as a cell surface molecule 13 .

In the present study, we used baculovirus to produce uniform, stable, soluble class I Dd molecules carrying peptides with a Dd-binding motif attached via a linker to the N terminus of ß2m. In the case of Dd carrying a peptide derived from HIV gp120, the secreted protein interacted specifically with a T cell hybridoma reactive to this combination.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Soluble Dd heavy chain

A version of the gene encoding the heavy chain of the mouse class I MHC molecule, Dd, was synthesized by PCR using a cloned Dd cDNA as a template (kindly provided by Dr. David Margulies, National Institutes of Health, Bethesda, MD). The PCR fragment was cloned into a previously described baculovirus transfer vector 5 behind the polyhedrin promoter. The gene was truncated at the end of the {alpha}3 domain to remove sequence encoding the transmembrane and cytoplasmic tail of the protein (Fig. 1GoA). Another version of this construct was made (Fig. 1GoB) including sequence at the 3' end encoding a linker and a peptide tag capable of being biotinylated by the Escherichia coli enzyme BirA 14, 15 . In both cases, the gene was introduced into baculovirus using the BaculoGold system (PharMingen, San Diego, CA) and a high-titered viral stock prepared as previously described 5, 6 . The virus was used to infect High Five insect cells (Invitrogen, San Diego, CA) as described in Results.



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FIGURE 1. Baculovirus constructions. Various versions of the genes for Dd heavy chain and mouse ß2m were cloned into a previously described (5) baculovirus transfer vector. See text for details.

 
Soluble mouse ß2m with covalently attached peptides

DNA encoding full-length mouse ß2m (from C57BL/6) was synthesized by PCR using a cDNA clone as template (kindly provided by Dr. Terry Potter, National Jewish Medical and Research Center, Denver, CO). The fragment was introduced into baculovirus using the same transfer vector as above (Fig. 1GoC). In two additional constructs, the 5' end of the mouse ß2m gene was modified to introduce sequence between that of the leader and the ß2m N terminus encoding a flexible peptide linker and either of two Dd-binding peptides (Fig. 1GoD). One was a generic peptide, IGPARAAAL (pGPRL), and the other was the well-characterized 16, 17 peptide from HIV gp120 corresponding to amino acids 318–327 (pHIV). Both peptides contained the Dd-binding motif, XGPXRXXX(X)L/I 18 . The genes were introduced into baculovirus and high-titered viral stocks established as above. These viruses were used with the Dd-producing virus to coinfect High Five insect cells as described in Results.

Monoclonal Abs

Two Dd-reactive mAbs were used in these experiments 18, 19 . mAb 34-2-12 is specific for the Dd heavy chain {alpha}3 domain and was used to capture Dd in an ELISA. mAb 34-5-8 is specific for Dd only when it contains bound ß2m and a peptide in its binding groove. This Ab was used for the detection of fully assembled Dd in an ELISA and for immunoaffinity purification of fully assembled Dd. An anti-mouse Cß mAb, H597 20 , was used in flow cytometric experiments to detect surface {alpha}ßTCR. CD8 was detected with the mAb, 53-6 21 . Bio-mAbs were produced using sulfo-N-hydroxysuccinimide-LC-biotin (Pierce, Rockford, IL).

ELISA for soluble assembled Dd

Immulon 1b microtiter plates (Dynex Technologies, Chantilly, VA) were coated with mAb 34-2-12. Various concentrations of culture supernatants containing an unknown amount of assembled Dd were incubated in the wells, and the bound Dd was detected with biotinylated mAb 34-5-8 and alkaline phosphatase-coupled Extravidin (Sigma, St. Louis, MO) using p-nitrophenylphosphate as substrate. A solution of purified Dd-pHIV of known concentration was used to establish a standard curve from which the concentrations of Dd in the unknown samples were estimated.

Cell lines

The CD8+ T cell hybridoma, B4.2.3 22 , was provided by Dr. David Margulies. This cell responds with IL-2 production to Dd plus pHIV. The Dd-bearing cell line, RMA/S-Dd, was kindly provided by Dr. David Raulet (University of California, Berkeley, CA). It is a version of the TAP-deficient cell line RMA/S that has been transfected with the gene for Dd heavy chain 23 . It was used to present free pHIV to B4.2.3. Another CD8+ T cell hybridoma, BD8-30, responsive to Kk as an alloantigen 24 , was used in control experiments. The CD4+ T cell hybridoma, KMAC-92, specific for Ek plus a peptide from moth cytochrome c corresponding to amino acids 88–103 (pMCC), has been previously described 25 .

Biotinylation of peptide tag and preparation of tetravalent Dd

Dd with pHIV or pGPRL covalently bound via ß2m was prepared carrying at its heavy chain C terminus the biotinylation peptide tag described above. The proteins were affinity-purified and subjected to size exclusion chromatography as described in Results. Aliquots were enzymatically biotinylated with BirA and tetravalent complexes of the proteins with phycoerythrin-streptavidin (PESA) were prepared, purified, and stored as previously described 15 . Similarly, a tetravalent version of biotinylated soluble Ek covalently bound to pMCC was prepared.


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Production of a soluble Dd with a covalently bound peptide

Insect cells were coinfected at high multiplicity with various ratios of baculovirus encoding Dd heavy chain and either pGPRL-ß2m, pHIV-ß2m, or ß2m without a covalent peptide. After 5 days, culture supernatants were assayed for assembled Dd molecules using an ELISA. An {alpha}3-specific mAb was used to capture the soluble Dd, and a mAb specific for fully assembled, peptide-containing Dd was used for detection. The results are shown in Fig. 2Go. As predicted by the specificities of the mAbs used in the ELISA, no product was detected when the insect cells were infected with either Dd heavy chain or one of the ß2m-producing viruses alone (Fig. 2Go, A-C). Only trace amounts of assembled Dd were detected after coinfection with viruses producing heavy chain and free ß2m (Fig. 2GoA). This result indicated that, for the most part, the appropriate peptides for binding stably to Dd were missing from the insect cells and the medium. High levels of assembled Dd were detected after coinfection with optimal ratios of viruses producing Dd heavy chain and ß2m covalently attached to either pGPRL or pHIV (Fig. 2Go, B and C). These results indicated that the soluble Dd heavy chain associated properly with the peptide linked to ß2m and that the attached peptide correctly occupied the peptide binding groove.



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FIGURE 2. Expression of Dd in baculovirus. Cultures (1 ml) containing 5 x 105 High Five insect cells were coinfected with a mixture of two viruses, one encoding soluble Dd heavy chain and the other encoding ß2m (A), pHIV-ß2m (B), or pGPRL-ß2m (C). Various volumes of the two viral stocks (titer >108) were combined, and the cultures were infected with the mixture at a multiplicity of infection of >10. Supernatants were harvested on day 5 and assayed in an ELISA specific for fully assembled Dd as described in Materials and Methods.

 
Purification of assembled Dd-pHIV

A liter of culture supernatant was produced from High Five insect cells coinfected with the optimal ratio of Dd heavy chain and pHIV-ß2m-producing viruses. The secreted Dd-pHIV protein was immunoaffinity-purified on a mAb 34-5-8 column and eluted with a buffer (pH 10.8). The eluate was neutralized, concentrated, and subjected to size exclusion chromatography on Superdex-200 (Pharmacia, Piscataway, NJ) (Fig. 3GoA). Fractions containing the major peak were pooled and concentrated. The final yield was ~4 mg. An aliquot of the concentrate was analyzed by SDS-PAGE (Fig. 3GoB) and isoelectric focusing (Fig. 3GoC) using the Phast system (Pharmacia). The SDS-PAGE gels showed that the preparation contained highly purified Dd, although some heterogeneity was evident in the heavy chain, perhaps due to carbohydrate heterogeneity. Significantly, with SDS-PAGE, the nearly uniform band corresponding to pHIV-ß2m showed an apparent m.w. of 14 kDa, reflecting the uniform increase in size of ß2m predicted by the addition of the linker and peptide. The preparation had an average isoelectric point of 6.7 with only a small amount of charge heterogeneity.



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FIGURE 3. Purification of Dd with covalently bound pHIV. One liter of Hive Five insect cells in spinner culture was infected at a multiplicity of infection of ~10 with an optimal mixture of Dd heavy chain and pHIV-ß2m-producing baculoviruses. Fully assembled Dd-pHIV was purified from the culture supernatant by immunoaffinity chromatography on Sepharose beads containing 2 mg/ml of 34-5-8 mAb. Bound Dd-pHIV was eluted with carbonate buffer at pH 10.8, neutralized, and concentrated to ~2 ml using Centricon-10 concentrators (Millipore, Bedford, MA). A, The protein was then further purified by fast protein liquid size exclusion chromatography using Superdex-200 and a buffer of PBS containing 5 mM NaN3. The elution pattern is shown as OD280 vs ml of eluate. The elution positions of standard proteins are shown: BSA, OVA, and myoglobin (MYO). The fractions encompassing the major peak were pooled and concentrated to ~10 mg/ml. The overall yield was ~4 mg. B, An aliquot of the final preparation was subjected to SDS-PAGE under reducing conditions using a 10–15% gradient gel using the pHast system (Pharmacia). The m.w. standards used were: ß-phosphorylase, 96 kDa; BSA, 67 kDa; chicken OVA, 45 kDa; catalase, 31 kDa; soybean trypsin inhibitor, 21 kDa; and hen lysozyme, 14 kDa. C, An aliquot of the final preparation was subjected to isoelectric focusing (IEF) in the range of pH 3–9 using the pHast system. The migration positions of standards of known isoelectric point are shown.

 
Interaction of soluble Dd-pHIV with the {alpha}ßTCR

In the case of peptides covalently attached to MHC class II molecules, the extension of the peptide from the peptide binding groove allows the attachment of the covalent linker in such a way as to minimize the possible interference with T cell recognition of the peptide/MHC complex 26 . Since the C terminus of the peptides bound to MHC class I is normally intimately involved in the peptide binding groove, the potential for the covalent linker to interfere with T cell recognition is higher. Therefore, we tested the ability of the Dd-pHIV construct to be recognized by a T cell hybridoma, B4.2.3, originally identified as specific for the free HIV peptide plus Dd 17, 22 . Biotinylated versions of Dd-pHIV and Dd-pGPRL were immobilized in tissue culture wells, and their ability to stimulate IL-2 production by B4.2.3 was tested. The results (Fig. 4Go) showed that Dd-pHIV, but not Dd-pGPRL, stimulated IL-2 production by B4.2.3 in a dose-dependent manner.



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FIGURE 4. Stimulation of a T cell hybridoma by immobilized Dd-pHIV. Streptavidin-coated microtiter wells were incubated overnight with various amounts of either Bio-Dd-pHIV (•) or Bio-Dd-pGPRL ({circ}). The plates were washed and 105 B4.2.3 hybridoma cells were added. As a control, 105 B4.2.3 were added to wells containing 105 RMA/S-Dd APCs and 10 µg/ml of pHIV (solid bar). After 24 h, the culture supernatants were assayed for IL-2.

 
Finally, we produced tetravalent complexes of Dd-pHIV, Dd-pGPRL, and Ek-pMCC with PESA as described in Materials and Methods. We compared the binding of these reagents to B4.2.3 and to two control hybridomas: BD8-30, an allo-Kk reactive CD8+ hybridoma, and KMAC-92, an Ek/pMCC CD4+ hybridoma. The binding of anti-Cß and anti-CD8 mAbs served as controls. The results are shown in Fig. 5Go. All three hybridomas bound the anti-Cß mAb, indicating the level of their surface {alpha}ßTCR expression (Fig. 5Go, A-C). As expected, the two class I MHC-specific hybridomas bound anti-CD8, but the class II MHC-specific hybridoma did not (Fig. 5Go, A-C). The PESA-Dd-pHIV reagent bound to B4.2.3 (Fig. 5GoD), but not to BD8-30 or KMAC-92 (Fig. 5Go, E and F). The PESA-Dd-pGPRL reagent did not bind to any of the hybridomas (Fig. 5Go, D-F). Finally, as expected, PESA-I-Ek-pMCC reagent bound specifically to KMAC-92 (Fig. 5GoF). These results show the dependence of the binding on the correct peptide bound to Dd. They also show that the tetravalent Dd did not bind to CD8 in the absence of the specific {alpha}ßTCR, since neither class I reagent bound to BD8-30, despite its very high surface expression of CD8.



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FIGURE 5. Specific binding of tetravalent Dd-pHIV to a T cell hybridoma. Aliquots of 105 B4.2.3 (A), BD8-30 (B), or KMAC-92 (C) cells were incubated with nothing (-·-·-·-·), Bio-anti-Cß (——), or Bio-anti-CD8 (— — —), washed, and incubated with PESA. After a second wash, the cells were analyzed for bound fluorescent PE by flow cytometry. Similarly, aliquots of B4.2.3 (D), BD8–30 (E), or KMAC-92 (F) cells were incubated with 10 µg/ml of tetravalent Dd-pHIV (——), Dd- pGPRL (-·-·-·-·-), or I-Ek-pMCC (— — —), washed, and analyzed for bound fluorescent PE. Finally, aliquots of B4.2.3 (G) or KMAC-92 (H) cells were incubated with various concentrations of tetravalent I-Ek-pMCC ({circ}) or Dd-pHIV (•), washed, and analyzed for bound fluorescent PE. The mean fluorescence of the population is shown vs the concentration of the tetravalent reagent used.

 
As we had previously seen, the binding of these reagents did not reach equilibrium or saturation under the conditions used here (Fig. 5Go, G and H). In a previous study 15 , we showed that the failure to reach saturation leads to a direct relationship between the extent of multivalent MHC-peptide binding to T cell hybridomas and the affinity of the {alpha}ßTCR for the monovalent ligand measured in vitro. We tested the idea that this principal applies as well to the binding of PESA-Dd-pHIV to B4.2.3. In Fig. 6Go, the open symbols show the previously reported 15 linear relation between tetrameric class II MHC-peptide binding to five different T cell hybridomas (including KMAC-92) and the dissociation constants of their {alpha}ßTCRs established by surface plasmon resonance. We calculated the normalized binding of tetravalent Dd-pHIV to B4.2.3 and Ek-pMCC to KMAC-92 from the data in Fig. 5Go (A, C, D, and F) and plotted these values vs the previously measured dissociation constants of the hybridoma {alpha}ßTCRs for their ligands: 30 µM for KMAC-92 27 and 2–8 µM for B4.2.3 28 . The current data for KMAC-92 (closed triangle) agree very well with the previously determined value (open triangle). The data for B4.2.3 show that this same standard curve predicts as well the relation between the binding of tetravalent class I Dd-pHIV to this hybridoma and the known affinity of its {alpha}ßTCR. These data strengthen our conclusion that the linker attaching pHIV to ß2m did not alter the affinity of the B4.2.3 {alpha}ßTCR for its ligand.



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FIGURE 6. Correlation between {alpha}ßTCR affinity and the binding of tetravalent MHC-peptide. The specific binding of tetravalent Dd-pHIV to B4.2.3 (x) or I-Ek-pMCC to KMAC-92 ({blacktriangleup}) was normalized to the binding of anti-Cß using the data shown in Fig. 5Go as follows: ratio = {[mean fluorescence with specific tetrameric MHC-peptide (20 µg/ml) - mean fluorescence with nonspecific tetrameric MHC-peptide (20 µg/ml)]/[mean fluorescence with anti-Cß and PESA - mean fluorescence with PESA alone]}. These ratios were plotted vs the hybridoma {alpha}ßTCR dissociation constants established by surface plasmon resonance (27, 28). Also shown are the previously reported (15) data calculated for five peptide/MHC class II-specific T cell hybridomas: KHAMA-93 ({circ}), 5KC73 ({diamond}), KMAC-92 ({triangleup}), KMAC-126 ({square}) and DO-11.10 ({triangledown}).

 

    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Recently, soluble MHC molecules with bound peptides have been used as reagents to study {alpha}ßTCRs either in affinity measurements 27, 28, 29, 30, 31, 32, 33, 34 or in directly visualizing Ag-specific T cells 15, 35, 36, 37, 38, 39 . In the latter case, multimerization of the MHC molecules overcomes the naturally low affinity of {alpha}ßTCRs for MHC ligands, producing a higher avidity via multipoint binding. In both of these types of studies, the quality of the reagent depends on the complete occupancy of the MHC peptide binding groove with a single peptide. While this has been achieved for both class I and class II MHC by loading "empty" MHC molecules in the presence of high concentrations of the peptide, the inherent instability of MHC molecules in the absence of a peptide can reduce yield and, for certain MHC alleles and isotypes, result in denaturation without significant peptide loading.

One alternate approach has been the covalent attachment of the peptide to the MHC molecule via a linker to the peptide C terminus 5, 6 . The structure of the peptide binding groove of class II MHC allows longer peptides to exit the groove at both the N-terminal and C-terminal ends. Therefore, the attachment of a linker to the C-terminal end was predicted not to interfere with peptide binding or T cell recognition of the complex. The prediction was borne out by the crystal structures of numerous class II MHC molecules with covalently attached peptides 9, 10, 26 .

For class I MHC, the C terminus of the peptide is intimately involved in MHC binding, and the groove is closed at both ends. It was not at first apparent how a linker could be attached to the peptide C terminus without disrupting peptide binding and/or interfering with T cell recognition. However, the many crystal structures of the MHC class I/peptide molecules offer an explanation for the success of these covalent constructs. In these structures, the peptide C-terminal carboxylate is firmly anchored in the groove via its carbonyl group, but its hydroxyl group is exposed on the surface for possible extension of the peptide. Such a case has been seen with an unusual peptide in which this exposed hydroxyl forms a peptide bond with a glycine extending the peptide by one residue that is fully solvent-exposed 40 . Furthermore, the recent crystal structures of soluble TCRs bound to MHC class I ligands 41, 42 suggest that, depending on the exact length and position of the Vß CDR1 loop, room exists for the peptide linker attached to the peptide C terminus to exit the interface without disrupting {alpha}ßTCR binding.

The method we describe here of attaching the peptide to the N terminus of ß2m via a flexible linker results in a high yield of fully assembled, soluble MHC class I occupied by a single peptide and suitable for {alpha}ßTCR interaction studies. We chose to attach the peptide to the N terminus of ß2m rather than MHC heavy chain because the crystal structures of class I predict a more direct path for the linker from the peptide C terminus to the ß2m N terminus. We chose a linker length of 13 amino acids, again based on crystal structures of MHC class I, predicting that the path from the peptide C terminus to the ß2m N terminus could be comfortably covered by a flexible linker of this length without interfering with {alpha}ßTCR binding.

Our experiments with Dd-pHIV support this rationale, since this covalent ligand interacted specifically with an {alpha}ßTCR of a T cell hybridoma raised to Dd plus a free HIV peptide. This interaction was demonstrated both by direct binding of a tetravalent Dd-pHIV to the hybridoma and by the stimulation by immobilized Dd-pHIV of the response of the hybridoma.

After we completed these studies, another group reported success with attaching peptides to the N terminus of ß2m via a linker 13 . In this case, the presentation of peptide to T cells by cells expressing the natural membrane-anchored form of either the Db or Kd heavy chain was studied. In one case, the gene for the peptide-ß2m was coexpressed with the heavy chain. In the other, the peptide-ß2m protein produced in bacteria was incubated with the heavy chain-expressing cells. In both cases, the cells became sensitive to lysis by peptide-specific T cells. While these authors did not establish directly the percent of class I occupied by the peptide-ß2m, they did offer evidence that the T cells were recognizing class I in which the peptide to ß2m covalent linkage was intact. Thus, in at least three cases, this type of linkage does not appear to interfere with T cell recognition.

In a previous study 15 , we established the direct relationship between the extent of tetrameric class II MHC-peptide binding to a T cell hybridoma and the affinity of the hybridoma {alpha}ßTCR for monomeric MHC-peptide. Our data presented here suggest that this principle may apply as well to class I MHC-peptide tetramers, although additional examples will be needed to test the hypothesis rigorously. Recent work has established the usefulness of tetravalent reagents in detecting Ag-specific cells 15, 35, 36, 37, 38, 39 . Our findings offer the prospect of being able to both enumerate class I and class II restricted Ag-specific T cells and to estimate easily the affinity of their receptors for peptide/MHC ligands. Such tools may offer insights into the problems of determinant selection in T cell immune responses and the escape of autoreactive T cells from elimination during the establishment of self-tolerance.


    Acknowledgments
 
We thank the Cell Culture Facility of the Cancer Center at the University of Colorado Health Sciences Center for preparation of culture supernatants of baculovirus infected insect cells. We also thank Bill Townend of the National Jewish Flow Cytometry Facility for help with flow cytometric analyses.


    Footnotes
 
1 This work was supported in part by United States Public Health Service Grants AI-17134, AI-22295, and AI-18785. Back

2 Address correspondence and reprint requests to Dr. John Kappler, Howard Hughes Medical Institute, National Jewish Medical and Research Center, 1400 Jackson Street, Denver, CO 80206. E-mail address: Back

3 Abbreviations used in this paper: ß2m, ß2-microglobulin; PESA, phycoerythrin-streptavidin; pGPRL, peptide IGPARAAAL; pHIV, HIV gp120 amino acids 318–327; pMCC, moth cytochrome c amino acids 88–103. Back

Received for publication June 25, 1998. Accepted for publication November 20, 1998.


    References
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 

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