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The Journal of Immunology, 1999, 162: 2180-2183.
Copyright © 1999 by The American Association of Immunologists

Molecular Basis of Human Complement C1s Deficiency

Yuichi Endo*, Kazuko Kanno*, Minoru Takahashi*, Ken-ichi Yamaguchi{dagger}, Yoichi Kohno{dagger} and Teizo Fujita*

* Department of Biochemistry, Fukushima Medical University School of Medicine, 1-Hikarigaoka, Fukushima, Japan; and {dagger} Department of Pediatrics, Chiba University School of Medicine, Inohana, Chyuo-ku, Chiba, Japan


    Abstract
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 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
This is the first report on the molecular basis of human complement C1s deficiency. Two abnormalities in the C1s gene were identified in a Japanese family, including one patient, by using exon-specific PCR, single-strand conformation polymorphism analysis, and nucleotide sequencing. A deletion of 4 bp, TTTG, was identified in exon X when using genomic DNA from the patient, his father, and his paternal grandmother. They were all heterozygous for the mutation. The mutant gene encodes a truncated C1s from the N terminus to the short consensus repeat domain. By further sequencing the PCR products, a nonsense mutation from G to T was identified at codon 608 in exon XII in the patient, his mother, and his sister. They were all heterozygous for the nonsense mutation. The mutant gene encodes a truncated form of C1s that lacks the C-terminal 80 amino acids. These results indicate that the patient was a compound heterozygote with the 4-bp deletion on the paternal allele and the nonsense mutation on the maternal allele. The levels of serum C1s seem to be correlated to the genotypes of the C1s gene in which no C1s was detected in the patient, and one-half of the normal level in the family members who are heterozygous for either mutation. The present study demonstrates that the disease is inherited in an autosomal recessive mode.


    Introduction
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 Abstract
 Introduction
 Materials and Methods
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 References
 
The serum serine protease C1s is a subcomponent of the complement C1 complex that combines with two other subcomponents, C1q and C1r (for review, see 1 . The C1 complex triggers subsequent steps of the classical pathway of complement activation after recognition of immune complexes by C1q. The primary structure of C1s deduced from its cDNA 2, 3 and the partial structure of the C1s gene 4 have been reported. The C1s gene is closely linked to the C1r gene on the short arm of human chromosome 12 5, 6, 7 .

Several cases of human C1 deficiency have been reported 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 in which the deficiency was due to the absence of the subcomponents C1q 11, 14, 15, 16, 17, 18 , C1r 8, 9, 13 , C1s 12 , or both C1r and C1s 10 . The molecular basis for hereditary C1q deficiencies are well defined in which homozygosity for nonsense mutations in both C1q A and B chain genes 11, 15, 17, 18 and deletion, nonsense, and missense mutations in the C1q C chain gene 15, 16 were demonstrated. However, there has been no report on the molecular basis for C1r and/or C1s deficiency, probably because of their low incidence 19, 20 and the lack of information needed for the analysis of patients’ genomes, especially with respect to the exon-intron structures of the C1r and C1s genes. In addition, it is difficult to obtain tissue specimens from the liver for mRNA analysis, the liver being a primary organ that expresses both genes 2, 6 .

Recently, we reported the full structure of exon organization of the human C1s gene 21 ; that study allowed us to assess the exon sequences throughout the coding region of this gene using genomic DNA. In this paper, we describe a case of selective C1s deficiency resulting from a compound heterozygosity for two different abnormalities in the C1s gene.


    Materials and Methods
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 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Patient

The pedigree of a Japanese family including one patient with the C1s deficiency is shown in Fig. 1GoA. The patient’s medical history included a virus-associated hemophagocytic syndrome (VAHS)3 (see Refs. 22 and 23) at age 4. In 1996 at age 6, he was admitted to Chiba University Medical Hospital (Chiba, Japan) because of a fever of unknown origin. A month after the admission, he had a convulsive fit and lost consciousness. Without recovering consciousness for 6 mo, he died at age 7 in 1997. The family had no special medical history. CH50 in both serum and plasma from the patient was undetectable despite normal levels of the complement components C1q, C2–C9. By Ouchterlony immunodiffusion, no C1s was detected in serum, whereas C1r was present. In seven live members of the family, both C1r and C1s were detectable.



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FIGURE 1. A, Pedigree of the family with C1s deficiency. The arrow represents the patient. The individuals marked with + were expired. The shaded and painted marks represent the individuals with a 4-bp deletion in exon X and a nonsense mutation in exon XII, respectively (see text). B, Serum C1s level estimated by rocket immunoelectrophoresis. The number on the right side of each lane represents the level in percentage, taking 100% as that of the healthy subjects. The individual symbols are the same as those in the pedigree. Healthy, unrelated healthy subject.

 
Rocket immunoelectrophoresis

Serum C1s levels were estimated by rocket immunoelectrophoresis with goat anti-human C1s Ab (Calbiochem, La Jolla, CA) as described 24 .

Southern blot hybridization

Southern blot hybridization with genomic DNA, digested with several restriction enzymes such as EcoRI, BamHI, and HindIII, was performed as described 25 using full-length C1s cDNA as a probe. Genomic DNA was prepared from peripheral white blood cells as described 26 .

PCR amplification of each exon of the C1s gene

PCR was conducted to amplify each exon of the human C1s gene using genomic DNA as a template and flanking intron sequences as primers. The nucleotide sequences of the exon-specific primers used are shown in Table IGo. The first exon, which encodes the 5'-untranslated region of the C1s transcript, was excluded from the present analysis. The longest exon, exon XII, which encodes the entire protease domain of C1s, was amplified in three overlapping sequences to achieve suitable sizes of the PCR products for single-strand conformation polymorphism (SSCP) analysis. PCR was performed in a 50 µl volume containing 1x buffer (cDNA reaction buffer; Clontech, Palo Alto, CA), 2.5 mM of each dNTPs, 10 µM forward and reverse primers, 200 ng genomic DNA, and 0.5 µl Advantage cDNA polymerase mix (Clontech). The thermocycling protocol was as follows: the first step at 94°C for 2 min; the second step consisting of 5 cycles at 94°C for 10 s, 65°C for 30 s, and 68°C for 2 min; the third step consisting of 5 cycles at 94°C for 10 s, 60°C for 30 s, and 68°C for 2 min; the fourth step consisting of 20 cycles at 94°C for 10 s, 52–55°C for 30 s, and 68°C for 2 min; and the fifth step at 68°C for 7 min.


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Table I. Nucleotide sequences of the primers used for PCR to amplify each exon of the human C1s gene

 
SSCP analysis of PCR products

Nonradioisotopic SSCP analysis was performed as described 27 . PCR products of 1–2 µl were mixed with a 2-fold volume excess of formamide containing 2.5% bromophenol blue and 2.5% xylene cyanol, denatured at 80°C for 5 min, and then subjected to electrophoresis on 6–10% polyacrylamide gel in 25 mM Tris-glycine buffer (pH 8.3) under cooling condition. After electrophoresis, the gel was stained using a silver staining kit (Silver Stain Plus; Bio-Rad, Richmond, CA). In this conventional SSCP, a dsDNA was observed in addition to two ssDNAs that were generated by partial renaturation of the PCR product.

Cloning of PCR products

PCR products were ligated into a plasmid vector (pGEM-T easy; Promega, Madison, WI) using a ligation kit (Takara Shuzo, Kyoto, Japan), and then transfected into XL1-Blue (Stratagene, La Jolla, CA). After plating, at least 10 colonies were selected at random for nucleotide sequence analysis.

Nucleotide sequence analysis

DNA sequence was determined by the dideoxy chain termination method 28 using a Li-Cor DNA sequencer (model 4000; Li-Cor, Lincoln, NE). The labeling reaction was conducted using the SequiTherm Long-Read cycle sequencing kit (Epicentre Technologies, Madison, WI). Sequencing primers were synthesized by Nishinbo (Tokyo, Japan).

Western blot analysis

Western blot analysis was performed to detect the truncated forms of C1s in the patient’s serum. Briefly, up to 2 µl of serum was subjected to a 9% polyacrylamide gel electrophoresis under nonreducing condition. After blotting to a membrane filter, the filter was developed with rabbit anti-C1s Ab (Serotec, Oxford, U.K.) or goat anti-C1s Ab (Calbiochem) followed by peroxidase-conjugated anti-rabbit IgG (or anti-goat IgG) Ab (Dako, Glostrup, Denmark).


    Results
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 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
C1s level in serum

A semiquantitative estimation of C1s by rocket immunoelectrophoresis showed no detectable C1s in serum from the patient (Fig. 1GoB). The parents and one of two siblings (corresponding to II-1, II-2, and III-1 in Fig. 1GoA) had half of the level of C1s that was detectable in an unrelated healthy subject, whereas the level in another sibling was as high as that in the healthy subject. The levels in sera from the patient’s grandfather and grandmothers were all lower than that in the healthy subject. Among the three grandparents, the level in the paternal grandmother was much lower, i.e., one-half the level of those in the paternal grandfather and the maternal grandmother.

Southern blot hybridization analysis of the C1s gene

No differences in the Southern blot hybridization patterns were observed among the patient, the members of the family, and the unrelated healthy subject, indicating that there was not a gross deletion or rearrangement of the C1s gene in the patient (data not shown).

PCR-SSCP analysis of each exon of the C1s gene

The PCR products obtained by starting with genomic DNA were subjected to SSCP analysis to screen for abnormality in the sequence. When using the PCR products corresponding exon X, an abnormal pattern was observed in the patient, his father, and his paternal grandmother (Fig. 2GoA). In addition to normal bands with the same mobilities as those in the healthy subject, abnormal bands were observed in these three individuals, demonstrating that they are all heterozygous for the abnormality. This result also indicates that the mutation was located on the paternal allele in the patient. PCR-SSCP patterns from the remaining five members, including the patient’s mother, two siblings, paternal grandfather, and maternal grandmother were all normal. No abnormality in PCR-SSCP for the other exons was observed in any of the eight family members tested (data not shown).



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FIGURE 2. A, PCR-SSCP analysis of exon X. The arrow shows one of the abnormal bands seen in three individuals. The individual symbols are the same as in Fig. 1Go. B, DNA sequences of the PCR products corresponding to exon X. The PCR products from the patient were cloned in plasmids and the clones, selected at random, were sequenced. Left, normal sequence; right, abnormal sequence with a 4-bp deletion.

 
Abnormality in the nucleotide sequence of exon X

The PCR product corresponding exon X from the patient was cloned in a plasmid. By sequencing the clones, we detected a deletion of 4 bp, TTTG (Fig. 2GoB), which corresponds to cDNA sequences 1350–1353 2 or 1293–1296 3 . One-half species of the clones selected at random have the same deletion, whereas the others have normal sequences, indicating again that the patient was heterozygous for the abnormal allele. In a PCR-SSCP starting with the cloned plasmid as template DNA, we confirmed that the cloned abnormal sequence had the same abnormal pattern as the uncloned genomic DNA (data not shown). Because of a newly generated in-frame stop codon at about 90 bp downstream from the 4-bp deletion, the abnormal gene encodes a truncated form of C1s protein from the N terminus to the short consensus repeat domain.

Abnormality in the nucleotide sequence of exon XII

To detect another abnormality in the C1s gene, all of the SSCP-negative PCR products from the patient were cloned in a plasmid and then sequenced. We identified a nonsense mutation at codon 608 in exon XII that was caused by a nucleotide substitution from G (GAA for glutamic acid) to T (TAA for stop codon) (Fig. 3GoA). The abnormal gene encodes a truncated form of C1s that lacks the C-terminal 80 amino acids. By extensive sequencing of the PCR product clones from members of the family, it was found that in addition to the patient, his mother and one of his siblings had the same mutation, and that all three were heterozygous for it (Fig. 3GoB). This result also indicates that the nonsense mutation was located on the maternal allele in the patient.



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FIGURE 3. A, DNA sequences of the PCR products from the patient corresponding to exon XII. Left, normal sequence; right, abnormal sequence with a nonsense mutation. B, The frequency of the abnormal clone including the nonsense mutation. Ten clones of the PCR product from each individual were selected at random for sequencing. The individual symbols are the same as in Fig. 1Go.

 
Western blot analysis for truncated C1s in the patient’s serum

The truncated forms of C1s that were possibly generated from the two mutant alleles of the C1s gene in the patient were undetectable by Western blot analysis (data not shown). In a control experiment with serum from a healthy subject, the intact C1s was obtained in a band of about 8 kDa.


    Discussion
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 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
The present study demonstrates that the patient was a compound heterozygote for two different mutations in the C1s gene. The 4-bp deletion on the paternal allele was transmitted from his paternal grandmother via his father, and the nonsense mutation on the maternal allele was transmitted from his mother or from his maternal grandfather via his mother as summarized in Fig. 1GoA.

The serum C1s levels were clearly dependent on the genotypes of the C1s gene at least in the second and third generations in the family in which the compound heterozygote had no detectable C1s and the single heterozygotes had roughly half of the normal level. The serum C1s levels in two grandparents, paternal grandfather and maternal grandmother, were lower than that in the healthy subject, despite their normal genotypes of the C1s gene, and the level in the paternal grandmother, who was heterozygote for the 4-bp deletion, was half of the level that was detected in the two former grandparents. Although there is no precise report concerning the relationship between serum C1s level and age, it is possible that the normal level of serum C1s in the aged generation may be lower than the normal level in the entire population.

We failed to identify the truncated C1s proteins in the patient’s serum by a Western blot analysis, suggesting that it was unstable in the circulation and/or was not antigenic. The putative truncated proteins lack the entire or part of the protease domain that includes the active-site Ser631 2, 3 , suggesting that they are functionally inactive. This finding implies that in the patient the classical pathway of complement activation did not function because of a failure in the formation of active C1 complex.

It has been reported that defects in the early components of complement, C1–C4, are frequently associated with a systemic lupus erythematosus- (SLE-) like syndrome or with recurrent viral and bacterial infections or with both 14, 19, 20 . We observed no clear SLE-like symptoms in our patient, except for weak titers of autoantibodies to nuclear and cytoplasm Ags. Also he had no apparent susceptibility to infectious disease. The patient’s medical history included VAHS. His clinical features at the time of admission such as persisting fever, swelling of lymphnodes, and elevated levels of serum ferritin and glutamic-oxaloacetic transaminase/glutamic-pyrovic transaminase 22, 23, 29 might indicate a second episode of VAHS, although we failed to identify any pathogens in culture of his blood and sputum. Risdall et al. 22 classified VAHS into two groups: group I develops VAHS in the absence of any apparent underlying disease and group II develops VAHS after the initiation of immunosuppression. They also reported that one of the patients in the latter group had SLE. VAHS is thought to be induced by the activation of macrophages or T cells through an incomplete immune response against pathogens followed by the overproduction of cytokines such as IFN-{gamma}, IL-1, IL-2, IL-6, TNF, and soluble IL-2R 30, 31 . Taken together, it is likely that in our patient dysfunction of the classical pathway due to the C1s deficiency, i.e., a lack of host defense against pathogens, finally resulted in VAHS. The present case seems to belong to group II of the above classifications.

The clinical features of the present patient were quite different from those of another Japanese patient with C1s deficiency 12 who had a mild SLE-like syndrome. The differences in clinical features and severity among the cases with the C1 deficiencies have been reported 14, 19 . This might be explained by the differences in the genetic backgrounds among the patients. Based on experiments using C1q-deficient mice generated by gene targeting, Botto et al. 32 reported that the phenotype associated with C1q deficiency was modified by background gene(s).

The fact that members of the family heterozygous for either of the two mutations had no symptoms suggests that the disease is inherited in an autosomal recessive mode. Although the frequencies of the two abnormal alleles in the Japanese population are unknown, the fact that the origin of the 4-bp deletion in exon X was traced back at least to the first generation of the family suggests that the mutation is spread in the local area of Japan. Autosomal recessive inheritance has also been reported in hereditary C1q deficiency 9, 16 .

In conclusion, a Japanese patient with selective C1s deficiency was a compound heterozygote for two abnormalities in the C1s gene. The levels of serum C1s in the family were correlated with the genotypes of the C1s gene. The absence of functionally active C1s in the patient may have caused clinical features such as VAHS.


    Footnotes
 
1 This work was supported in part by grants from the Ministry of Education, Science, and Culture of Japan. Back

2 Address correspondence and reprint requests to Dr. Yuichi Endo, Dept. of Biochemistry, Fukushima Medical University School of Medicine, 1-Hikarigaoka, Fukushima 960-1295, Japan. Back

3 Abbreviations used in this paper: VAHS, virus-associated hemophagocytic syndrome; SSCP, single-strand conformation polymorphism; SLE, systemic lupus erythematosus. Back

Received for publication August 31, 1998. Accepted for publication November 9, 1998.


    References
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 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 

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