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Department of Microbiology and Immunology, Temple University School of Medicine, Philadelphia, PA 19140
| Abstract |
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| Introduction |
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A likely explanation for the presence of these otherwise infrequent VH-D-JH rearrangements in anti-chromatin Abs is that the rare B cells expressing them have been selectively expanded because of their reactivity with DNA or DNA-histone complexes. There is indeed a large body of evidence showing that self reactive B cells are clonally expanded during the autoimmune process (15). An additional mechanism may be that newly emerging B cells from autoimmune mice more frequently possess these unusual VH-D-JH rearrangements. If this hypothesis is correct, differences in VH-D-JH rearrangement patterns between normal and autoimmune mice could be apparent before the development of the autoimmune disease. In the present study, we therefore test the hypothesis that atypical rearrangements are more frequent in autoimmune-prone mice by comparing libraries of VH-D-JH joints that we have generated from newborn autoimmune and normal mice. The results suggest that, before the development of autoimmunity, atypical junctions (D-D fusions and inverted D segments) and secondary D-JH rearrangements occur more frequently in newborn MRL than in C3H animals.
| Materials and Methods |
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Male and female animals from the autoimmune MRL/MpJ +/+ (MRL) and the Igh allotype-matched normal C3H/HeJ (C3H) strains were obtained from The Jackson Laboratory (Bar Harbor, ME) and bred in our animal facilities (16). Newborn animals (<24 h old) were sacrificed and their livers were collected and stored frozen at -80°C.
Primers
DNA was extracted from pooled (five to six) newborn livers using
a genomic DNA extraction kit (Promega, Madison, WI) and was then
subjected to PCR amplification. The PCR primers and protocols were
adapted from previously described methods (17, 18, 19) (Table I
). Amplifications were conducted using
nested PCR as follows. In the first PCR, DNA was amplified with a mixed
set of antisense JH primers and either a sense J558 primer
or a sense 7183 primer (corresponding to a consensus framework 1
region). In the second PCR, 10 µl of the first PCR were reamplified
with primers that were internal to those used in the first PCR. All PCR
reactions were conducted in a volume of 50 µl containing
MgCl2 (1.5 mM), dNTPs (200 µM each), primers (0.4 µM
each), and Taq DNA Polymerase (2 units). Cycling conditions
were an initial 5 min denaturation at 94°C; 35 cycles (1 min at
94°C, 2 min at 50°C, 1 min at 72°C); and a final 5-min extension
at 72°C. After the second (internal) PCR, amplification products were
separated on a 1% agarose gel, and bands of the appropriate size were
isolated with the Qiaex II agarose gel extraction kit (Qiagen,
Chatsworth, CA). The purified products were directly ligated
into the pGEM-T vector (Promega) and transformed into JM109 cells.
After blue/white selection, positive colonies were grown in 5 ml of
LB/Amp for plasmid purification. The inserts were sequenced using the
fmol DNA sequencing system (Promega) with a
32P-labeled primer complementary to the T7 promoter (GTA
ATA CGA CTC ACT ATA GGG C). Virtually all plasmids contained a
VH-D-JH rearrangement, and their sequences were
analyzed using the GCG program by comparison with known D and
JH germline sequences (20, 21, 22). A minimum of four
contiguous identical nucleotides was required for assignment to a
germline D sequence.
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All analyses were conducted with the Prism software (Release 2.01, GraphPad Software, San Diego, CA).
| Results |
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By nested PCR amplification, we generated sets of VH-D-JH sequences from newborn autoimmune MRL or control (allotype-matched) C3H mice. For each mouse strain, two sets of sequences were generated with sense primers corresponding to either J558 or 7183 VH families. We analyzed a total of 73 sequences (20 VHJ558 and 53 VH7183) from MRL mice and 68 sequences (13 VHJ558 and 55 VH7183) from C3H mice (available from GenBank under accession numbers AF071597 to AF071737). These sequences were characterized for multiple parameters such as D and JH usage, N and P nucleotide insertions, and sequence homology at the VH-D and D-JH junctions. Comparisons between the two strains are shown in Tables II to VI. The frequencies of nonproductive rearrangements were 0.38 (28/73) and 0.32 (22/68) for MRL and C3H, respectively. These values were not significantly different (using Fishers exact test) between both strains and were similar to those previously reported in other studies (23).
D and JH gene segment usage
The two strains differed significantly in their JH
gene usage (Table II
, p
< 0.0001). The MRL VH-D-JH rearrangements used
JH4 at a greater frequency than C3H (47% vs 7%). The
usage of the four D gene families (SP2, FL16, ST4, and Q52) by
VH-D-JH rearrangements from MRL and C3H mice is
listed in Table III
. The distribution of
these families significantly differed between both strains
(p = 0.008), with a greater usage of Q52 in C3H
mice. Within each strain, there was no significant difference in D or
JH usage between productive and nonproductive
rearrangements. While Q52 and ST4 are single gene families, FL16 has
two members, and SP2 comprises at least nine germline genes. In
previous repertoire studies conducted in BALB/c mice, the most
frequently used D gene was DFL16.1 (14, 17). Although it was used more
often than its DFL16.2 counterpart, DFL16.1 was found in only 4 of 68
C3H and 7 of 73 MRL sequences in the present study. Of all the
VH-D-JH rearrangements using an SP2 gene, the
most frequently used sequence (18 MRL and 8 C3H) was not one of the
usually recognized germline genes (DSP22 to DSP210), but a sequence
(cctactatAgtaactac) that differs by only one nucleotide from
the DSP2.7 germline sequence (cctactatGgtaactac). This
sequence is probably a bona fide germline D gene since a GenBank
database search detected it in several unrelated mAbs (not shown) and
in D-JH joints (24, 25). This putative germline D gene was
actually named DSP2.x by Gu et al. (25). Whether DSP2.x represents an
additional germline gene or an allelic variant of one of the previously
identified germline genes remains to be determined. The reason for the
frequent usage of DSP2.x is not known, but the nucleotide difference in
this new sequence results in a serine codon (instead of a glycine) in
the most frequently used reading frame. Since none of the other members
of the DSP2 family possesses a serine codon in this reading frame,
DSP2.x may be preferentially selected because of the versatile
binding properties conferred by the serine side chain in the CDR3 (26).
The relationship between DSP2.x usage and the autoimmune process is
unknown, but it is worth noting that our GenBank search detected
full-length DSP2.x sequences in several independently derived
anti-DNA Abs (27, 28).
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D segments can be transcribed in all three possible reading frames,
but, in genes from the SP2 and FL16 families, one of the reading frames
(termed RF1) is more frequently utilized. Counterselection against the
other RFs is due to the presence of stop codons in RF3 and of the
transcription of a Dµ protein in RF2 leading to the premature
termination of rearrangements at the H chain locus (25). RF usage in
our panel of VH-D-JH rearrangements is listed
in Table IV
, showing that RF1 is the most
frequently used RF in both MRL (77%) and C3H (80%). There was no
significant difference in the distribution of RF usage between both
strains.
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transgene (31). Both rearrangements were D-D fusions where
one of the D segments is frequently rearranged in inverted orientation.
Our GenBank search did not find this sequence in any conventional
VH-D-JH rearrangement, nor in any reported
D-JH joint. In contrast, a similar GenBank search with the
DSP2.x sequence in standard orientation discovered many uses of this
sequence in D-JH joints and VH-D-JH
rearrangements from independently derived mAbs (24, 25, 27, 28, 32, 33, 34, 35, 36). Therefore, the most logical interpretation of our findings is
that these sequences do indeed contain the DSP2.x gene in inverted
orientation and that atypical rearrangements are more frequent in the
MRL neonatal repertoire than in C3H mice. Junctional diversity
Homology-based VH-D or D-JH
recombinations, i.e., junctions that are identical to both the 3' end
of the upstream and the 5' end of the downstream germline sequences,
are frequent in the fetal and neonatal repertoires (18). We indeed
observed that the majority of our sequences contain regions
of junctional homology and that the frequency of sequences possessing
homologies is not significantly different between the MRL (71%) and
C3H (74%) strains (Table V
).
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Deduced amino acid sequences from productive rearrangements
We examined the deduced protein sequences of the 45 MRL and 46 C3H
productive rearrangements. These sequences were overall similar in both
strains and are listed in Fig. 2
. The
average residue lengths of the CDR3 were 9.87 for MRL and 9.61 for C3H
(not significantly different). VH-D-JH
rearrangements from both strains contained arginine and asparagine
residues at similar frequencies: 0.04 Arg and 0.31 Asn/CDR3 for MRL and
0.04 arg and 0.26 Asn/CDR3 for C3H. These values were not statistically
different between both strains (Table VI
).
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| Discussion |
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C3H and MRL VH-D-JH rearrangements differ in their D segment and JH gene usage. C3H junctions utilize DQ52 in 19 of 65 conventional rearrangements, vs 5 of 62 for MRL. Conversely, MRL junctions use JH4 in 30 of 62 conventional rearrangements, vs 5 of 65 for C3H. DQ52, the most 3' D segment, is overrepresented in primary D-JH rearrangements, presumably because of its proximity to the JH locus (14). The lesser use of DQ52 and the increased utilization of JH4 in MRL mice suggest a greater frequency of secondary D-JH rearrangements in this strain. Such rearrangements use an upstream D sequence and a downstream JH gene to delete a previous D-JH rearrangement. Secondary D-JH rearrangements are frequent in transformed pre-B cell lines (37), but are thought to be uncommon in normal mouse repertoire (17, 38). If the dissimilar use of DQ52 and JH4 between MRL and C3H is due to an increased frequency of secondary D-JH rearrangements in MRL mice, then DQ52-JH4 joints must be rare. This is indeed the case since, in C3H mice, none of the 19 DQ52-containing rearrangements involved JH4, whereas, in MRL mice, only one of the 30 JH4+ joints involved DQ52. Therefore, in both strains, DQ52 is more likely to rearrange with one of the JH genes that is located upstream of JH4 and JH4 is more likely to be associated with one of the D genes that are 5' of DQ52.
Our observation supports the view that B cells from autoimmune individuals or mice manifest intrinsic defects that contribute to the self reactive process (39, 40). There is additional evidence that VH-D-JH rearrangements are intrinsically different in autoimmune mice. Alarcón-Riquelme and Fernández have examined the sequences of the H chain CDR3s from a panel of small resting C57BL6/lpr B cells (41). They observed that a majority of these "preimmune" rearrangements involved D segments read in RF2 and RF3, and they proposed that this was the result of a defect in the selection mechanisms acting independently of, and earlier than, Ag selection (41). Nevertheless, the high density B cells used by these authors were obtained from 5-mo old animals, and Ag selection could not be entirely ruled out. We have characterized a panel of several polyreactive IgM mAbs from mice belonging to various spontaneously autoimmune strains (42). In contrast to most conventional Abs that use RF1, the D segments of these polyreactive Abs made use of all three possible RFs. Since none of the polyreactive mAbs in our panel reacted with DNA, this unusual RF usage was not selected by stimulation with DNA as Ag. In our present study, RF usage was similar in autoimmune and control newborn mice, suggesting that these RF differences may manifest themselves only in adult animals.
The differences observed between MRL and C3H are not the mere result of
a defect in Fas-mediated selection since we used MRL +/+ mice that
possess an intact Fas gene contrary to their
MRL-lpr/lpr counterparts. The mechanisms that favor the
presence of atypical VH-D-JH rearrangements can
only be speculative at this stage. These could result from differences
in the recombination machinery itself or from selection events that
take place after the association of the H chain with the surrogate
light chain or with a functionally rearranged
or
light chain
(43, 44). Other investigators have suggested that the properties of H
chain rearrangements influence B cell development (39). In birds,
Pandey et al. suggested that B cells undergo prenatal developmental
selection before exposure to Ag through a mechanism involving
interaction between the protein product resulting from V(D)J
recombination and endogenous ligands (45). If indeed V(D)J products are
selected before Ag exposure, it is conceivable that an anomaly in this
selection process may be one of the defects responsible for the
development of systemic autoimmunity.
The precise sequence of events that result in a VH-D-D-JH rearrangement (D-D fusion) has yet to be established with certainty. Since recombination signal sequences with 12-bp spacers flank D segments on both sides, D-D fusions violate the 12/23 rule. They can presumably occur because of the recognition of an alternate recombination signal sequence (with a 24-bp spacer) created by a heptamer-like sequence within the coding region of certain D genes (46). It has been shown that two unrearranged D segments can directly join (30), but it is also possible for an upstream D to rearrange with a preexisting D-JH joint. The latter process is similar to a partial secondary D-JH rearrangement, where the recombinase machinery joins an upstream D to a previous D-JH rearrangement, rather than to a downstream JH. That this phenomenon is relevant to autoimmunity is suggested by the frequent usage of JH4 in MRL autoantibodies, such as anti-chromatin Abs and rheumatoid factors (11, 12, 47, 48). It is unlikely that JH4+ clones are selected for their binding properties since all four germline JH genes are similar in sequence and their contribution to Ab diversity and specificity is limited. Therefore, in MRL mice, the same mechanisms may result in an increased frequency of atypical VH-D-JH joints and of secondary D-JH rearrangements.
Although atypical VH-D-JH are present in many anti-DNA Abs characterized from lupus-prone mice (13), they are not a universal feature of induced anti-DNA Abs. For instance, a panel of high affinity IgG anti-DNA mAbs obtained from BALB/c mice after various regimens of protein Ag immunizations possessed conventional VH-D-JH junctions (49). Recently, Ash-Lerner et al. compared the structures of anti-DNA mAbs that use the BW-16 VH gene, a germline gene associated with the autoimmune response in lupus-prone mice (50). Whereas BW-16+ anti-DNA mAbs from NZB x NZW/F1 mice displayed complex rearrangement patterns with D-D fusions and alternate RFs, BW-16+ anti-DNA mAbs from C3H mice immunized with DNA complexed to an immunogenic peptide possessed "standard" VH-D-JH rearrangements (50). Therefore, the immune system is capable of generating anti-DNA Abs from a variety of B cell precursors. That it elects to use B cells with atypical VH-D-JH junctions in autoimmune mice may simply result from the increased availability of such rearrangements in lupus-prone strains.
One may therefore wonder whether a difference in the number of B cell precursors could affect the level of the Ab response or if this difference would be irrelevant because of the magnitude of Ag-driven clonal expansion. There is experimental evidence that B cell precursor frequency affects the amplitude of the Ab response against the corresponding self Ag. BALB/c mice have a greater frequency of preimmune B cells self reactive to mouse cytochrome c than C57BL/6 mice (51). This difference persists during the secondary response to mouse cytochrome c-OVA where BALB/c still have three times more B cells specific for murine cytochrome c than do C57BL/6 mice (51).
In summary, our data suggest that lupus-prone MRL mice possess an intrinsic defect that favors the production of atypical VH-D-JH joints and secondary D-JH rearrangements in newborn animals. It will be critical to assess in future experiments whether similar differences exist between autoimmune and normal mice in the adult pre-B cell repertoire.
| Acknowledgments |
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| Footnotes |
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2 Address correspondence and reprint requests to Dr. Marc Monestier, Department of Microbiology and Immunology, Temple University School of Medicine, 3400 North Broad Street, Philadelphia, PA 19140. E-mail address: ![]()
3 Abbreviations used in this paper: CDR, complementarity determining region; MRL, MRL/MpJ +/+; C3H, C3H/HeJ; RF, reading frame. ![]()
Received for publication July 13, 1998. Accepted for publication October 27, 1998.
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