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Center for Infectious Disease and Vaccine Research, University of Massachusetts Medical Center, Worcester, MA 01655
| Abstract |
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| Introduction |
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Influenza virus-specific CTL have been shown in murine studies to limit influenza A virus replication and to protect against lethal influenza A virus challenge (7, 8, 9, 10, 11, 12). CTL have been found in the lungs of influenza A virus-infected mice (8), and recovery from influenza infection has correlated with clearance by CD8+ CTL (9). Virus-specific CTL clones that recognize epitopes on the nucleoprotein (NP), HA, nonstructural 1 (NS1) proteins, and influenza virus-stimulated immune splenocytes adoptively transferred into naive recipients reduced pulmonary virus titers after influenza virus challenge (7, 10, 11, 12). Our laboratory has shown that active immunization with an HA fusion protein that induced HA-specific CTL but not neutralizing Ab caused a reduction in peak lung virus titers after virus challenge and protection against a lethal challenge dose (13). Lack of CD8+ CTL delays viral clearance and increases mortality after infection with a virulent strain of influenza virus (14). CD4+ virus-specific T cells may help compensate for the absence of CD8+ CTL because the virus can be cleared in CD8+ CTL-deficient mice; however, mice lacking both CD4+ and CD8+ CTL do not clear virus or survive (15). Therefore, CTL seem to be important in both restricting influenza A virus replication and reducing disease severity.
In 1997, an H5N1 influenza A virus was isolated from a 3-year-old boy in Hong Kong. This child did not survive the infection, and his was the first of six deaths due to H5N1 influenza A virus infections (16). The isolated virus was found to be similar to avian H5N1 viruses (17, 18). We speculated that most of the older children and adults living in Hong Kong and elsewhere in the world in 1997 would possess influenza A virus cross-reactive memory T cells and that some of these clones would recognize epitopes on the H5N1 avian-derived virus strains that caused human illness. There have been no reports of the ability of human influenza A virus-specific CTL to recognize epitopes on nonhuman viruses. We have developed and characterized a panel of human CD8+ and CD4+ CTL lines from several donors residing in a city in the U.S. (19). These T cell lines were found to be either subtype specific or cross-reactive to the H1N1, H2N2, and H3N2 subtypes of human influenza A viruses (19). We determined whether these human CD8+ and CD4+ CTL lines would recognize epitopes on autologous cells infected with influenza A virus strains of swine and avian species including the H5N1 virus strains recently isolated from patients in Hong Kong. In addition, we tested bulk culture responses of these donors to determine whether CTL cross-reactivity could be detected at the population level and quantitated the precursor frequency of CTL specific for epitopes on the H5N1 virus.
| Materials and Methods |
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Influenza A viruses, A/Puerto Rico/8/34 (H1N1) and A/Japan/305/57 (H2N2), were kindly provided from the Division of Virology (Bureau of Biologics, Food and Drug Administration, Bethesda, MD). A/Hong Kong/156/97 (H5N1) and A/Hong Kong/483/97 (H5N1) were kindly provided by Nancy Cox, World Health Organization Influenza Reference Laboratory, at the Centers for Disease Control and Prevention (Atlanta, GA). A/Duck/Pennsylvania/10218/84 (H5N2), A/Duck/Alberta/35/76 (H1N1), and A/New Jersey/8/76 (Hsw1N1) were provided by the American Type Culture Collection (Rockville, MD). Influenza A viruses were propagated in 10-day-old, embryonated chicken eggs. Infected allantoic fluids were harvested 2 days after infection with A/PR/8/34 or A/Japan/305/57 and 1 day after infection with A/HK/156/97 and A/HK/483/97, aliquoted, and stored at -80°C until use. Studies with the A/HK/97 virus strains were performed under biosafety laboratory level 3 conditions.
Human PBMC
PBMC specimens were obtained from normal, healthy, Caucasian American donors. PBMC were purified by Ficoll-Hypaque (Pharmacia, Piscataway, NJ) density gradient centrifugation (20). Cells were resuspended at 2 x 107/ml in RPMI 1640 with 20% FBS (Sigma Immunochemicals, St. Louis, MO) and 10% DMSO and cryopreserved until use. The HLA alleles of donor 1 were A2.1, A11, B18, B27, Cw1, Cw7, DR1, DQw1, DQw3, DRw52, DRw53; those of donor 2 were A2, A24, B7, B62, Cw3, DP2, DR1, DR2, DQw5, DQw6; and those of donor 3 were A1, B8, B44, Cw5, DR2, DR3, DQw1, DQw2, DRw52. HLA typing was performed in the HLA typing laboratory at the University of Massachusetts Medical Center.
Bulk cultures of PBMC
Responder PBMC were suspended at 106/ml in AIM-V
medium (Life Technologies, Grand Island, NY) containing 10% human AB
serum (NABI, Boca Raton, FL), penicillin-streptomycin, glutamine, and
HEPES in a 70-ml Falcon flask (Becton Dickinson, Franklin Lakes, NJ).
Stimulators were infected with the influenza A virus strain A/PR/8/34
(H1N1) at a multiplicity of infection of 15 for 1.5 h at 37°C in
1 ml PBS containing 0.1% BSA, and were then added to responders in a
flask at a stimulator:responder ratio of 1:10. On day 7 of culture,
cells were restimulated with
-irradiated (3,000 rad) autologous PBMC
infected with A/PR/8/34 at a multiplicity of infection of 15 for
1.5 h in 1 ml PBS containing 0.1% BSA, added at a
stimulator:responder ratio of 1:10 in fresh medium containing 10%
human AB serum and 20 U IL-2 (Collaborative Biomedical Products,
Bedford, MA). Restimulated cells were assayed for cytolytic activity 7
days later.
CTL cell lines
Influenza-specific CTL clones were derived by methods that have
been previously described (19, 21). PBMC that had been stimulated in
bulk culture for 7 or 14 days were collected and plated at a
concentration of 3, 10, or 30 cells/well in 96-well round bottom
microtiter plates in 100 µl AIM-V medium containing 10% FBS, 20 U
IL-2, 1:1000 dilution of the anti-CD3 mAb (12F6) kindly provided by
Johnson Wong, and 105
-irradiated allogeneic PBMC/well.
On day 7, 50 µl fresh medium with 10% FBS (Sigma) and IL-2 were
added, and on day 14 fresh medium with 105
-irradiated
allogeneic PBMC/well and 1:1000 dilution of anti-CD3 mAb were
added. Growing cells were assayed for cytolytic activity on days 21 and
28. Cells from wells with influenza A-specific cytolytic activity were
expanded to 48-well plates. Some T cell epitopes have been previously
defined by others: NP 383391 (22), M1 5866 (23), NS1 122130 (24),
and M1 1731 (25). We have identified additional CD8+ and
CD4+ human T cell epitopes (19).
Preparation of target cells
Autologous B cell lymphoblastoid cell lines (B-LCL) were established by culturing with EBV in 24-well plates as previously described (26). Autologous B-LCL were infected with influenza A viruses in 1 ml 10% FBS in RPMI 1640 for 1216 h. These infected target cells were labeled with 0.25 mCi 51Cr for 60 min at 37°C. After four washes, the target cells were counted and diluted to 1.5 x 104 cells/ml for use in the cytotoxicity assay.
Cytotoxicity assays
Cytotoxicity assays were performed in 96-well round bottom plates, as previously reported (27). Briefly, effector cells in 100 µl RPMI 1640 medium containing 10% FBS were added to 1.5 x 103 51Cr-labeled target cells in 100 µl at various E:T ratios. In CTL assays using synthetic peptides, peptides were added to target cells at the indicated concentrations and incubated at 37°C for 30 min, after which the effector cells were added. Peptides were synthesized at the Core Protein Chemistry Facility directed by Dr. R. Carraway (University of Massachusetts Medical Center, Worcester, MA). In assays testing bulk cultures, 1.5 x 104 K562 cells/well were added to the effectors for 2 h prior and left in during the assay to reduce NK cell activity. Plates were centrifuged at 200 x g for 5 min and incubated for 45 h at 37°C. Supernatant fluids were harvested using the supernatant collection system (Skatron Instruments, Sterling, VA), and 51Cr content was measured in a gamma counter. Spontaneous release was <30% in all assays unless otherwise indicated. The percent specific 51Cr release was calculated as [(cpm experimental release - cpm spontaneous release)/(cpm maximum release - cpm spontaneous release)] x 100. All assays were performed in triplicate, and the results were calculated from the average of the triplicate wells. Specific immune lysis was calculated by subtracting the percent specific lysis of peptide-pulsed targets from lysis of uninfected targets.
Single-cell enzyme-linked immunospot (ELISPOT) assay for
IFN-
-secreting cells
The ELISPOT assay was done as previously described (19, 28).
Briefly, 96-well filtration plates (Millipore, Bedford, MA) were coated
with mouse anti-human IFN-
Ab (clone NIB42, PharMingen, San
Diego, CA). Cryopreserved PBMC were thawed, washed, and added to the
plates at 5 x 105/well in RPMI 1640 medium
supplemented with 10% FBS, penicillin-streptomycin, glutamine, and
HEPES. Cells were incubated for up to 15 h with or without peptide
stimulation (10 µg peptide/ml). The plates were washed and then
incubated with biotinylated mouse anti-human IFN-
Ab (clone
4S.B3, PharMingen). Spots were developed using fresh substrate buffer
(0.3 mg/ml of 3-amino-9-ethylcarbazole and 0.015%
H2O2 in 0.1 M sodium acetate, pH 5). The
precursor frequency of peptide-specific CTL was calculated based on the
number of spots counted of the number of cells added to the wells.
| Results |
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The only nonhuman influenza A virus we had available to begin
these experiments was the influenza A/NJ/76 (Hsw1N1) virus, which was a
swine-like influenza virus strain isolated from a young soldier who
died of influenza in Fort Dix, NJ, in 1976 (3). The human
CD8+ or CD4+ CTL lines previously established
by stimulation with influenza A/PR/8/34 (H1N1) virus (19) were tested
for recognition of epitopes on autologous target cells infected with
the A/NJ/76 (Hsw1N1) virus. The results shown in Table I
(Expt. A) indicate that about one-half
of the CD8+ human influenza A-specific, subtype
cross-reactive CTL lines recognize and kill target cells infected with
the swine-like A/NJ/76 virus at levels similar to those for lysis of
target cells infected with the human A/PR/8/34 (H1N1) virus.
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The 1997 H5N1 Hong Kong virus strains were subsequently tested for
recognition as virus-infected autologous target cells by these human T
cell lines (Table I
, Expt. C). Several of the donor 1 CD8+
cell lines recognized the H5N1 virus-infected target cells, e.g., cell
line 1-1 which is HLA-B27 restricted and recognizes aa 383391 on NP,
and cell line 1-7-K which is HLA-A2.1 restricted and recognizes aa
5866 on the M1 protein. Other CD8+ CTL lines recognized
target cells infected with H1N1 virus but not targets infected with the
Hong Kong H5N1 strains, e.g., cell line 10-2C2 which is HLA-A2.1
restricted and recognizes aa 122130 on NS1. Cell lines 1-2F8 and
10-1B7, both HLA-B27 restricted, recognize epitopes on the polymerase
(PB1 and PB2) proteins, and these cell lines recognized target cells
infected with the 1997 Hong Kong viruses to a similar degree as the
earlier human H1 virus. The subtype-specific CD4+ CTL line
10D9-d10 which is HLA-DR1 restricted and recognizes an epitope on NA
only recognized target cells infected with A/PR/8/34 virus (H1N1).
Similar results were obtained using cell lines derived from donor 2. Entirely cross-reactive killing of target cells infected with the H1 or the H5N1 Hong Kong strains was seen with one CD8+ CTL line, 3G11, which is HLA-B62 restricted and recognizes an epitope located within aa 315496 on NP. Two CD4+ CTL lines that recognize epitopes on NP (3E5) and M1 (10E7) were also cross-reactive to the Hong Kong avian virus-infected target cells. However, an NA-specific CD4+ line 3E9 recognizes only H1N1 virus-infected target cells. One cell line from the third donor exhibited a very cross-reactive pattern of lysis, while a second cell line exhibited a specific pattern of lysis. The CD4+ CTL line 77 restricted by HLA-DR3 recognizes an epitope on aa 3442 on the NS1 protein, and lysed target cells infected with the human H1 virus and the 1997 Hong Kong virus strains. On the other hand, the HLA-B44-restricted CD8+ CTL line 124, which recognizes aa 715 on the matrix 2 (M2) protein, killed target cells infected with human H1N1 subtype virus but did not recognize target cells infected with either of the 1997 Hong Kong viruses.
Bulk culture PBMC lysis of avian, swine, and human-derived influenza A virus-infected targets
Bulk cultures of human A/PR/8/34 virus-stimulated PBMC effector
cells were tested for recognition of autologous B-LCL infected with
human H1N1 or H2N2 viruses, older avian viruses (H5N2 and H1N1), the
recent avian-derived viruses isolated from humans in 1997 in Hong Kong
(H5N1), or the swine-like 1976 virus (Hsw1N1). The results in Fig. 1
demonstrate convincing killing by cells
in these bulk cultures of target cells infected with the recent Hong
Kong viruses to a degree similar to that of target cells infected with
the older human H1N1 and H2N2 virus strains. Killing was also observed
of target cells infected with the older avian virus strains and the
Hsw1N1 strain. This experiment demonstrates that humans have memory T
lymphocytes that recognize epitopes on avian- and swine-derived
viruses, including the recent Hong Kong-derived strains, in a highly
cross-reactive fashion.
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Next, the effect of mutations in the A/HK/156/97 (H5N2) virus
sequences at peptide epitope sites recognized on the A/PR/8/34 (H1N1)
sequence was examined. The results in Table II
show a variety of mutations and
recognition patterns. Cell line 10-2C2, a CD8+ CTL that
recognizes aa 122130 on the NS1 protein of H1N1, H2N2, and H3N2
viruses, does not recognize target cells pulsed with the A/HK/156/97
peptide due to a single N
D mutation at aa 127. The
CD4+ cell line 3E5, which recognizes aa 254264 on the NP
of A/PR/8/34, also recognized targets pulsed with the A/HK/156/97
peptide despite a T
I mutation at aa 258. A CD8+ CTL
line 124, which recognizes an epitope on M2 aa 715 on the H1N1
subtype virus, does not recognize the H5N1 peptide which has changes at
aa 10, 11, and 14. These results illustrate that some epitopes of avian
viruses can still be recognized by human CTL, while others cannot.
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Table III
demonstrates the precursor
frequency of CTL detected in PBMC to two different epitopes of the
human H1N1 and Hong Kong H5N1 viruses determined using an ELISPOT assay
to quantitate the number of IFN-
-producing cells. In donor 1,
stimulation of PBMC with the peptide based on NP aa 174184 of
A/PR/8/34 (H1N1) had a precursor CTL of 1/4348. Stimulation with the NP
174184 peptide based on the A/Hong Kong/156/97 strain with a V
I
change at aa 183 produced a similar number of IFN-
-secreting cells.
On the other hand, the E
Q change at aa 23 in the M1 protein on the
avian Hong Kong 483 strain resulted in the loss of detectable
precursors in this donor when used as a peptide to stimulate PBMC. Thus
the quantitative detection of individual peptide-specific T cells
showed either a similar frequency of precursor CTL or an absence of
precursor CTL, depending on the specific epitope and the mutations
present in the recently isolated Hong Kong viruses.
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Q change at aa 23 is not recognized.
There are three other epitopes that are not conserved; a B27-restricted
clone recognizes a mutation on NP aa 183 (V
I). The other two
epitopes with mutations are not recognized: an HLA A2.1-restricted T
cell epitope aa 122130 has a N
D change at aa 127 and a
B44-restricted epitope on M2 aa 715 has three aa changes. Therefore,
there is cross-reactive recognition by the human CTL clones of the
avian virus strains that are conserved or have conservative aa changes
in CTL epitopes, but mutation at several other epitopes results in a
lack of recognition.
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| Discussion |
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The cross-reactive recognition of epitopes by these CD8+
and CD4+ T cell clones fits well with available sequence
data. Clones that recognized defined epitopes with no or minimal
conserved mutations recognized target cells infected with the
swine-derived Hsw1N1, the older avian virus strains H5N2 and H1N1, and
the recent H5N1 isolates from Hong Kong similar to target cells
infected with human H1N1 virus. For example, the conservative T
I
change in the epitope recognized by the CD4+ T cell line
3E5 at position 4 of the A/HK/156/97 strain did not abrogate
recognition. A minority of these human T cell lines failed to recognize
other strains when certain nonconservative mutations occurred. This is
seen with the epitope recognized by CD8+ cell line 10-2C2,
where a N is mutated to a D at position 6 (aa 126 on the NS1 protein)
in the A/HK/156/97 strain. Thus, having an acidic amino acid at this
position that is usually oriented toward the cleft top (29) abrogates
recognition by this cell line. Other avian viruses such as
A/Duck/Ukraine/1/63 also have this mutation at amino acid 127 of NS1
(24).
The level of influenza A virus peptide-specific precursor CTL has been
shown to correlate with the number of IFN-
-producing cells in PBMC
after a brief exposure to peptide (19, 28). The estimation of precursor
frequency in PBMC using an ELISPOT assay was in accord with the results
of the CTL assays performed with bulk cultures and with the T cell
lines. CTL lines, which killed target cells infected with human
subtypes and viruses derived from avian species in a cross-reactive
fashion, were detectable as single cells in PBMC at similar precursor
frequencies following stimulation with the human H1N1 peptide or
the corresponding peptide from the H5N1 Hong Kong virus. This was seen
using peptides based on the NP epitope with amino acids 174184 which
has a conservative V
I change in the A/HK/156/97 strain and a
precursor frequency similar to that detected with the A/PR/8/34
sequence. On the other hand, peptides of the H5N1 virus with mutations
in the epitope that resulted in no lysis of virus-infected or
peptide-pulsed target cells had an undetectable precursor frequency
following stimulation with the H5N1 peptide. For example, the E
Q
mutation at position 7 in the M1 epitope with aa 1731 abrogated
IFN-
secretion. The precursor frequency derived using the human H1N1
viral peptide stimulation was much higher than that of the A/HK/483/98
peptide. Therefore, replacing the acidic glutamic acid residue with the
neutral glutamine residue at position 7 on this epitope decreased
IFN-
secretion by the PBMC of donor 1. Another group found that
changing this amino acid to an asparagine, along with a Y at position 3
and a K at position 10 abrogates proliferation of T cell clones (30).
What are the effects of these preexisting human influenza A virus
cross-reactive memory T cells when a new nonhuman influenza A virus is
introduced into humans, as occurred in Hong Kong in 1997 (3) and might
have occurred in 1918? There was relatively little influenza A virus
activity noted in the two decades preceding the 1918 pandemic (4). An
epidemic occurred in 1890 which appears to have been caused by a virus
with an H3-like HA based on serological evidence of H3-specific Abs
found before 1968 in the sera of individuals born before 1890 (6). The
reasons for the tremendous mortality during the 1918 pandemic are
unknown. Young adults, especially the age group of 2535 years, had
very high mortality rates in 1918 which is unusual in influenza; deaths
usually occur in the very young and in older individuals (4). Thus, a

-shaped curve in age-related mortality with the peak deaths
between the ages of 2535 was described instead of the usual
-shaped curve with deaths peaking only in the very young and old
(4). In addition to unusual virulence of the 1918 virus, responses,
including cross-reactive influenza-specific T cell responses, may have
been low or absent in some of the young adult cohort because there was
relatively little influenza A activity noted during the two decades
immediately before 1918 (4).
The impact of influenza A cross-reactive memory CTL on the morbidity and mortality associated with influenza virus epidemics and the pandemics of 1918, 1957, and 1968 is unknown. In 1957, most adults presumably had cross-reactive CTL memory to epitopes on the H1N1 viruses which circulated widely before the "Asian" pandemic (H2N2) of 1957. Similarly, when the H3N2 "Hong Kong" virus emerged in 1968, adults and older children would be expected to have had cross-reactive memory CTL as a result of infection with the prior H2N2 virus strains, and adults would also have been exposed to the earlier H1N1 strains. The pandemic of 1957 caused more deaths than that of 1968, but fortunately this was only a fraction of the deaths that were observed in 1918. Although it is clear that cross-reactive memory T cells did not prevent infections and excess mortality in 1957 and 1968, these memory T lymphocytes may have contributed a degree of partial protection by limiting the degree of viral replication, based on experimental studies of CTL in mouse models (7, 10, 11, 12).
Overall, these results suggest that adults living in urban areas have CD8+ and CD4+ memory CTL as a result of prior infection with human influenza A viruses, and these CTL are in large part cross-reactive to epitopes on influenza A virus strains derived from swine and avian species. Although we detected mutations at several human CTL epitopes, some mutant virus sequences were still recognized by these clones. Most of the human CTL clones were able to recognize entirely conserved or mutated viruses, consistent with the results of our bulk culture experiments. There is considerable conservation among the genes encoding the internal and nonstructural proteins of influenza A virus, which is consistent with our results. The presence of these memory T lymphocytes may play a role in helping to restrict virus replication, thereby decreasing morbidity and mortality to a degree. Our results support the hypothesis that cross-reactive T cells will be activated in humans by infection with a novel influenza A virus derived from another species, and the activation of these memory CTL by infection may result in reduced replication of the new infecting virus.
| Acknowledgments |
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| Footnotes |
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2 Abbreviations used in this paper: HA, hemagglutinin; NA, neuraminidase; NP, nucleoprotein; NS1, nonstructural 1; M1, matrix 1; M2, matrix 2; B-LCL, B cell lymphoblastoid cell lines; ELISPOT, enzyme-linked immunospot. ![]()
Received for publication February 8, 1999. Accepted for publication April 5, 1999.
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