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The Journal of Immunology, 1998, 161: 4777-4784.
Copyright © 1998 by The American Association of Immunologists

Invariant Chain Can Bind MHC Class II at a Site Other Than the Peptide Binding Groove1

Nancy A. Wilson*, Paula Wolf{ddagger}, Hidde Ploegh{ddagger}, Leszek Ignatowicz§, John Kappler* and Philippa Marrack2,*,{dagger}

* Howard Hughes Medical Institute, Department of Medicine, National Jewish Center, and {dagger} Departments of Biochemistry, Biophysics and Genetics, Immunology, and Medicine, University of Colorado Health Science Center, Denver, CO 80206; {ddagger} Department of Pathology, Harvard Medical School, Boston, MA 02115; and § Institute of Molecular Medicine and Genetics, Medical College of Georgia, Augusta, GA 30912


    Abstract
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 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Invariant chain binds to class II molecules and guides them to the cell surface via the endosomes. Class II-associated invariant chain peptide (CLIP), a conserved sequence in an unstructured region of invariant chain, binds in the peptide binding groove of class II and is thought to be the major contributor to the interaction between invariant chain and class II molecules. However, other interaction sites between the two proteins may exist. The published data on this subject are conflicting. We have studied the ability of invariant chain to interact with a class II molecule in which the peptide binding groove of the protein is already occupied by a covalently attached peptide. Precipitation of these class II/peptide complexes with an Ab specific for this particular combination also precipitates invariant chain. This binding between class II/peptide and invariant chain is weak, and coprecipitation is only apparent in mild detergents. Thus, when the class II peptide binding groove is occluded by peptide and is not free to interact with CLIP, invariant chain can still bind the class II molecule at other lower affinity sites.


    Introduction
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 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Invariant chain (Ii)3 is a nonpolymorphic protein expressed in tissues that synthesize MHC class II proteins (1, 2), although its gene is not located in the MHC region. Ii is important for the efficient assembly of the class II {alpha}ß heterodimer (3), and with class II forms a nonameric complex in the endoplasmic reticulum comprised of an Ii trimer and three {alpha}ß dimers of the class II molecule (4, 5). Murine Ii has two forms, the predominant p31 molecule, and p41, which arises due to alternate splicing of exon 6b (6, 7, 8). Ii directs newly synthesized class II molecules to specialized acidic compartments in the endocytic pathway where Ii is proteolytically destroyed and exogenous peptide is loaded before the appearance of class II on the cell surface (4, 9).

Ii has been shown to bind class II molecules via a conserved sequence, CLIP, that occupies the peptide binding groove of class II. Engagement of CLIP prevents binding of other peptides by class II in the endoplasmic reticulum. However, recent evidence by Zhong et al. indicates that perhaps this function is secondary to stabilization of the class II structure (10). Additionally, Stumptner and Benaroch have shown that it may not even be necessary for CLIP to bind in the peptide groove to prevent peptide binding (11). It is not until the Ii plus class II nonamer reaches the endocytic compartment that CLIP can be displaced and replaced with antigenic peptides. This displacement is probably accomplished by a combination of Ii proteolytic degradation (5, 12) and interaction with another class II-like protein, H2-M (HLA-DM in human systems) (13, 14, 15, 16). In the absence of H2-M, class II molecules bound to peptides derived from the CLIP region of invariant chain accumulate (17).

Some evidence suggests, however, that Ii can bind to class II at sites other than the peptide binding groove. For example, although the superantigen staphylococcal enterotoxin B binds class II at a site that does not primarily involve the peptide binding groove, staphylococcal enterotoxin B engagement can interfere with Ii binding to class II (18). Additionally, Ii engagement inhibits binding to class II of another superantigen, toxic shock syndrome toxin, TSST-1 (19, 20). Also, peptides derived from Ii, not including CLIP, can bind to or interact with class II molecules (18, 21). Stumptner and Benaroch have shown that there are three separate binding sites on Ii for class II, only one of which is CLIP, and that any two of these are sufficient for Ii-class II interaction (11). There is disagreement on this point, however, as attempts to reveal binding sites for class II on Ii distinct from CLIP have sometimes failed (22, 23). To resolve this matter we have taken a different approach to the problem.

Some of us have recently described transgenic mice that lack wild-type class II ß-chains and are instead transgenic for a gene encoding a class II ß-chain, Aßb, covalently linked to a peptide, E{alpha}52–68 (Ep) (24). The Ep peptide can engage the peptide binding groove of the class II protein, IAb (Ab), expressed in these mice. In mice lacking Ii (AbEpIi-), the peptide binding grooves of all detectable Ab proteins are occupied by the Ep peptide. In Ii+ mice, however, some of the Ab proteins no longer have Ep bound to their grooves, or the Ep bound is no longer covalently linked, and these Ab proteins are therefore free to engage other peptides. These results imply that Ii binds to the AbEp complex and guides it through the endocytic pathway, resulting in removal of the Ep peptide from the groove. To achieve this, either the CLIP region of Ii must compete with the covalent peptide for engagement by the Ab peptide binding groove in the endoplasmic reticulum, or Ii must interact with the Ab molecule at a site unaffected by prior engagement of the covalent peptide. In this paper we show that Ii can indeed interact with a class II molecule, the peptide binding groove of which is already occupied by peptide. Hence, Ii can interact with class II via a site distinct from the peptide binding groove.


    Materials and Methods
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 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Animals

Mice were bred in the Biologic Resource Center, National Jewish Center (Denver, CO), or were purchased from The Jackson Laboratory (Bar Harbor, ME). Animals transgenic for AbEp were constructed and bred with animals that could not express other class II proteins or Ii as previously described (24, 25, 26).

Assay for Ag presentation

Presenting cells were prepared from the spleens of various types of mice as follows. Spleen cell suspensions were prepared in balanced salt solution using nylon screens, and RBC were lysed using ammonium chloride. The spleen cells were then cultured for 24 to 48 h at 106 cells/ml with or without 25 µg/ml LPS (Sigma, St. Louis, MO).

Expression of covalently attached or free Ep in the peptide binding grooves of Ab on the surface of these spleen cells was assayed using two T cell hybridomas: BE{alpha}-16.3, which reacts with Ep bound to Ab regardless of whether the two are covalently linked, and BE{alpha}-20.14, which reacts with free Ep bound to Ab but not with the covalent combination of Ab and Ep (L. Ignatowicz, unpublished observations). The spleen cells and T cell hybridomas were cultured together for 24 h, and stimulation of T cells by Ab plus Ep on the spleen cells was assessed by IL-2 production as previously described (27).

The ability of exogenously added peptides to displace Ep from the peptide binding grooves of the Ab proteins of these spleen cells was measured by addition of 75 µg/ml chicken OVA327–339 or OVA323–339 (OVA) to the cells and presentation of OVA to the IAb-OVA-specific T cell hybridoma, 2B10.D2O-22.3. Again, presentation was assessed by the production of IL-2 (27).

Biosynthetic labeling of splenocytes with [35S]methionine/cysteine

Splenocytes were isolated as described above and were cultured at 108 cells/ml in RPMI deficient in cysteine and methionine with 50 µl of EXPRESS/ml (15 mCi/1.2 ml; cysteine, methionine, and protein labeling mix, New England Nuclear, Boston, MA). After 30 min the medium was diluted with a 20-fold excess of complete culture medium, and the cells were spun and washed in complete medium at 37°C. The cells were then resuspended at 1.25 x 107 cells/ml in culture medium, and the pulse was chased by culture at 37°C for various lengths of time. Chases were stopped by spinning the cells out of the culture medium and incubating them on ice.

Immunoprecipitation and SDS-PAGE analyses

35S-labeled cells were lysed at a concentration of 2.5 x 107/ml in lysis buffer (0.5% Nonidet P-40, 50 mM Tris (pH 7.4), and 5 mM Mg2+) on ice for 45 min. Debris was removed by centrifugation, and the supernatant was precleared by two successive incubations with 4 µl of normal rabbit serum and fixed staphylococcus A by a standard method (28), modified by the inclusion of one additional formaldehyde fixation step after the heat inactivation step, for 1 h each, alternated with two successive incubations with 3 µl of normal mouse serum and fixed staphylococcus A for an additional 1 h each. The supernatants were also precleared with 3 µl of the Ab P8 and staphylococcus A.

At this point, TCA precipitations were performed to normalize labeling efficiency. AbEp complexes were immunoprecipitated from the lysates first using anti-AbEp (mAb YAe) (29), and the remaining Ab complexes that lacked the Ep peptide in their grooves were immunoprecipitated by anti-Ab (mAb Y3P) (30), which recognizes mature Ab-peptide complexes regardless of the peptide bound. The resulting immune complexes were isolated using staphylococcus A. Class II molecules were released from staphylococcus A by incubation in sample buffer (0.0156 M Tris (pH 6.8), 1.25% ß-ME, 2.5% glycerol, and 1% SDS) at room temperature for 20 min or by boiling in sample buffer for 5 min. The preparations were run on 12.5% SDS/30- x 25-mm polyacrylamide gels at 80 to 100 V overnight. Gels were processed by soaking in two changes of DMSO, followed by incubation in 27% 2,5-diphenyloxazole/DMSO, then were rehydrated in water. The processed films were dried and exposed to film for 4 wk.

Western analyses

Spleen cells were isolated as described above and lysed at 108 cells/ml in 0.5% Nonidet P-40 or 0.5% CHAPSO, 50 mM Tris (pH 7.4), and 0.1 mM PMSF (Sigma) for 10 min at room temperature. Debris were spun out and the resulting supernatants precleared with normal rabbit serum, normal mouse serum and P8 as described above. The supernatants were then immunoprecipitated with anti-AbEp, anti-Ab, or anti-Ii, and the resulting immune complexes were isolated using protein A beads. Pellets were boiled in sample buffer and run on 12.5% acrylamide SDS minigels for 30 min at 200 V or on regular gels (14 cm x 15 cm x 1 mm) for 2 h at 200 V. The gels were soaked in transfer buffer, and the proteins were transferred to polyvinylidene difluoride membranes using a semidry transfer apparatus (Trans-blot SD, Bio-Rad, Richmond, CA) for 22 min at 15 V for minigels or for 40 min at 20 V for regular gels. Completion of transfer was measured by observing the transfer of Coomassie blue-conjugated m.w. markers, followed by standard fixation and Coomassie blue staining of the gel after transfer of protein to the blot. After blocking, the membranes were exposed to 3.2 µg/ml anti-Ii (mAb In-1) (31) for 1 h, followed by 0.35 µg/ml horseradish peroxidase (HRP)-conjugated goat anti-rat Ab (Boehringer Mannheim, Indianapolis, IN). Bands bound by anti-Ii were revealed using the enhanced chemiluminescence Western blot kit (Amersham, Arlington Heights, IL) and photographic film (Hyperfilm ECL, Amersham) with various exposure times.

In the Western blots shown in Figures 5Go and 6Go, class II and Ii expression in spleen cells was increased before isolation by incubation of the cells for 18 h at 106 cells/ml in 1 ng/ml IL-4 (32).



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FIGURE 5. Binding of Ii to class II in which the peptide groove contains Ep is specific. Splenocytes were isolated from AbEpIi+, AbEpIi-, and C57BL/10 mice. Class II and Ii levels were enhanced by overnight culture with IL-4. Cells were lysed in 0.5% CHAPSO, precleared, and immunoprecipitated with anti-AbEp, anti-Ab, B220, 28-8-6 (anti-MHC class I), or In-1 (anti-Ii) Abs. After Western blotting, Ii was detected with the mAb In-1.

 


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FIGURE 6. Most of the ß-chain present in AbEpIi+ mice has had the linker clipped and the peptide replaced by other peptides. Splenocytes were incubated with 1 ng/ml IL-4 overnight, lysed in 1% Nonidet P-40, precleared, and then immunoprecipitated with either anti-Ab or anti-AbEp. After Western blotting the Aßb chain was visualized with the mAb N22. Each lane represents 5 x 107 cell equivalents.

 
The Western blots in Figures 5Go and 6Go used regular sized (14 x 15 cm) SDS gels. In Figure 6Go, membranes were exposed to 1 µg/ml N22 (33) followed by 1/2000 biotinylated anti-hamster (1 mg/ml) biotin-HIG 88.2, a mouse anti-Armenian hamster IgG mAb made by one of us (J.K.), then 0.2 µg/ml streptavidin coupled to HRP.


    Results
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 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Expression of Ii leads to the exchange of the Ep peptide in AbEp complexes for the antigenic peptide cOVA

We have previously shown that the covalent linker between class II and the peptide in AbEp molecules is cleaved in cells that express Ii, but not in cells that lack Ii (24). We tested whether this would also be true in activated cells. Spleen cells from AbEp mice that did or did not express Ii (AbEpIi+ or AbEpIi-, respectively), were cultured with or without LPS for 48 h and then assayed for their ability to present the Ab binding peptide, cOVA323–339, to a T cell hybridoma specific for AbOVA. As shown in Figure 1Go, cells from AbEpIi- mice failed to present the peptide even if they had previously been activated with LPS. In contrast, cells from AbEpIi+ mice or from control C57BL/10, Abwt, animals presented the peptide well, and this ability was somewhat enhanced by preincubation with LPS. Thus, Ii is required for the displacement of Ep from AbEp molecules, even in activated cells.



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FIGURE 1. The presence of Ii leads to exchange of the covalently bound peptide in the AbEp complexes with other peptides. Spleen cells were cultured with or without 25 µg/ml LPS for 48 h and then assayed for the ability to present OVA peptide at 75 µg/ml to a T cell hybridoma specific for Ab/OVA. The response was measured by the amount of IL-2 secreted. The results shown are typical of three experiments, each performed in triplicate.

 
The covalent linker between Ab and Ep is cleaved in Ii+ cells

A peptide bound by a flexible covalent linker to a class II molecule should, due to its high local concentration, compete very efficiently with other peptides for binding to that molecule. Yet the presence of Ii causes this peptide to be displaced with relatively high efficiency. We hypothesized that this was because expression of Ii led to cleavage of the covalent linkage between Ab and Ep, an event that would then allow peptides to compete more effectively for binding to the Ab protein.

We took advantage of a T cell hybridoma, BE{alpha}-20.14, which distinguishes between Ab molecules bound to Ep in which the linker is either present or absent. BE{alpha}-20.14 recognizes Ep bound to Ab only if the linker is clipped or missing. Another T cell hybridoma, BE{alpha}-16.3, on the other hand, recognizes Ep bound to Ab regardless of whether the covalent linker remains intact.

Spleen cells were prepared as described above and then cultured with each of the T cell hybridomas. BE{alpha}-16.3 responded well to AbEp cells regardless of whether they contained Ii (Fig. 2GoA). BE{alpha}-20.14 responded to AbEp cells that expressed Ii but not to those that lacked Ii. These results confirmed that all detectable Ab molecules in AbEpIi- cells remain covalently linked to the Ep peptide. The results also showed that the covalent linker is clipped on some of the AbEp molecules in AbEpIi+ cells, even though Ep may still be engaged to the peptide binding grooves of these proteins. It was not possible to tell from this assay how much of Ep remained covalently bound to Ab in AbEpIi+ cells.



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FIGURE 2. T cell hybridomas, which can distinguish between Ab binding Ep containing the covalent linkage or not, reveal that the covalent linkage between Ab and Ep is clipped in some of the Ab molecules on cells that express Ii. Spleen cells were cultured with or without 25 µg/ml LPS for 48 h, then used to stimulate BE{alpha}-16.3, a T cell hybridoma that recognizes Ep in the context of Ab regardless of whether the linker is present (A), or BE{alpha}-20.14, a T cell hybridoma that recognizes Ep bound to Ab only if the covalent linker is absent (B). The response was measured by the amount of IL-2 secreted. This experiment is typical of three experiments, each performed in triplicate.

 
Biochemical experiments were performed to confirm this finding. Spleen cells were isolated from Ii- and Ii+ AbEp animals. These cells were pulse labeled with [35S]methionine/cysteine for 30 min and then chased for various lengths of time in methionine/cysteine-containing culture medium. Lysates from the labeled cells were prepared, precleared, and subjected to two rounds of immunoprecipitations, performed sequentially. In the first round, lysates were immunoprecipitated with an Ab that recognizes only Ab molecules bearing the Ep peptide in their groove (anti-AbEp). Lysates were then immunoprecipitated with an Ab that recognizes Ab regardless of the peptide in its peptide binding groove (anti-Ab). In this experiment the first precipitation did not remove all AbEp proteins from the lysates, as witnessed by precipitation of some AbEp molecules with the anti-Ab (Fig. 3Go).



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FIGURE 3. 35S pulse/chase labeling reveals that in the presence of Ii the covalent linker between Ab and Ep is cleaved. Spleen cells from AbEpIi- (A) and AbEpIi+ (B) mice were pulsed with [35S]methionine and cysteine for 30 min. The labeled cells were then chased for various lengths of time. The cells were lysed with 0.5% Nonidet P-40, and lysates were immunoprecipitated with anti-AbEp followed by anti-Ab. Immunoprecipitates were incubated for 20 min in 1% SDS at room temperature or were boiled for 5 min, and then run on 12.5% SDS-PAGE. A single band at the class II dimer position was observed in the boiled samples from AbEpIi+ cells. This band was distinguishable from bonafide class II dimers by the facts that it was a single band rather than a doublet and that it was also seen in other boiled precipitates from the same cells, for example anti-class I precipitates.

 
The {alpha}-chain of Ab does not label well with methionine and cysteine and was therefore less easily visualized than the Ab ß-chains. After boiling in SDS the AbEp polypeptide migrated as a glycoprotein of about 34 kDa. This molecular mass increased slightly during the chase, probably because of maturation of its attached sugars (Fig. 3Go). Control immmunoprecipitations with C57BL/6 spleen cells showed that the Aßbwt polypeptide migrated at a lower molecular mass (data not shown). The ß-chains of this molecular mass were observed in the boiled immunoprecipitates from AbEpIi+ cells (Fig. 3Go).

The class II material from AbEpIi- cells had shared characteristics, regardless of whether it was precipitated by anti-AbEp or by anti-Ab. The ß-chain always had a molecular weight consistent with that predicted for the noncleaved AßbEp polypeptide, and the intact Ab protein precipitated from these cells was always stable in room temperature SDS (Fig. 3Go). These results showed that Ep must occupy the peptide binding groove of the Ab protein to which it is covalently attached as soon as the protein is assembled. This conclusion was supported by the fact that anti-AbEp precipitated ß-chains before their sugars had completely matured (Fig. 3Go), when the protein was presumably still in the endoplasmic reticulum.

Precipitation with anti-AbEp showed that cells from AbEpIi+ mice also contained Ab molecules that were still covalently attached to Ep and were stable in room temperature SDS (Fig. 3Go). Some of these molecules may also have been isolated during subsequent precipitation with anti-Ab, since this Ab precipitated material that was stable in room temperature SDS immediately after the 30-min pulse.

The T cell hybridoma results described above suggested that anti-AbEp precipitates from AbEpIi+ cells should contain some Aßb chains engaged by Ep but in which the covalent linker to Ep had been cleaved, and which should therefore run at a lower molecular mass than that of AßbEp. However, only small amounts of such material were revealed on the gels, suggesting that the hybridoma BE{alpha}-20.14 is sensitive to very low concentrations of Ab bound to free Ep.

At early time points in the pulse chase of AbEpIi+ cells, anti-Ab precipitated some labeled Ab molecules that were not stable in room temperature SDS (Fig. 3Go). The mobility of this material on the gels showed that it was composed of Aßb chains from which the Ep had been cleaved. As the time of the chase increased, Ab proteins that were unstable in room temperature SDS disappeared, and Ab proteins that were stable in SDS at room temperature increased. These results demonstrated that in the presence of Ii, the covalent linker between Ep and Ab could be cleaved within 30 min of synthesis of the polypeptides. Such cleavage could have occurred either in the endoplasmic reticulum or in the endosomes. Cleavage in the endoplasmic reticulum would probably require the cleaved material to be free of the class II peptide binding groove (34) and thus implies that Ii CLIP successfully competed with the covalent peptide for binding to a minor proportion of the class II proteins. Cleavage in the endosomes would require that in the presence of Ii, some of class II traffick to this compartment of the cell.

Finally, the gels showed that even in the presence of Ii, most of the Ab protein that was precipitated by anti-AbEp was still covalently bound to Ep. These were presumably proteins on which Ep had successfully competed, in the endoplasmic reticulum, with CLIP for binding to their peptide binding grooves. The fact that their covalent linkers were still intact suggested either that the completely folded, Ep-bound Ab protein was resistant to peptide displacement and linker cleavage in the endosomes or that this material had not migrated to the cell surface via the endocytic pathway. In the latter case this must mean that, in the absence of a peptide groove available for CLIP binding, Ii must not be able to bind to all the Ab proteins.

In summary, these experiments showed that Ii can affect the intracellular trafficking of at least some AbEp proteins, causing them to go to the cell surface via the endosomes. The following experiment was performed to find out how Ii binds to AbEp to have this effect.

Ii can bind class II molecules with peptide binding grooves bearing a non-Ii peptide

The anti-AbEp Ab cannot bind to Ab molecules engaged by peptides other than Ep, including CLIP. The idea that Ii can bind to class II molecules at sites other than the peptide binding cleft could therefore be tested by finding out whether Ii precipitated with Ab during isolation with the anti-AbEp Ab. Since these potential secondary binding sites between Ii and class II might not be of high affinity, various lysis conditions were tested to determine whether any of them would allow detection of Ii bound to peptide-occupied class II. After preliminary experiments two conditions were chosen for additional experiments, lysis with 0.5% Nonidet P-40 and lysis in 0.5% CHAPSO.

Cells from AbEpIi-, AbEpIi+ and C57BL/6 mice were lysed under the two conditions described. Lysates were immunoprecipitated with anti-Ab or anti-AbEp, analyzed on SDS-PAGE, and Western blotted with an anti-Ii Ab. As shown in Figure 4Go, anti-Ab immunoprecipitates from C57BL/6 and AbEpIi+ cells both contained an Ii-specific band when probed with the Ii-specific mAb. This was true for both lysates made with 0.5% Nonidet P-40 and those made under the gentler conditions, with 0.5% CHAPSO. The band from AbEpIi+ cells was less intense than that from C57BL/6 cells, because the former cells bore less Ab (24).



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FIGURE 4. Ii can interact with Ab at a site(s) other than its peptide binding groove. Spleen cells from C57BL/6 (BL/6), AbEpIi-, or AbEpIi+ mice were lysed with 0.5% CHAPSO or 0.5% Nonidet P-40 and immunoprecipitated with either anti-AbEp or anti-Ab. The immunoprecipitates were boiled in SDS, run on 12.5% SDS-PAGE, transferred to nitrocellulose, and probed with anti-Ii. Anti-Ii binding was revealed with HRP-coupled anti-rat Ig using a Western blot kit from Amersham.

 
Anti-AbEp did indeed coimmunoprecipitate Ii with AbEp from AbEpIi+ cells providing the lysates were prepared in CHAPSO. This coprecipitation was specific, since anti-B220 or anti-class I Abs did not coprecipitate Ii from CHAPSO lysates of AbEpIi+ cells (Fig. 5Go). These experiments showed that Ii could bind to Ab even if the peptide binding groove of Ab were occupied by another peptide. Ii binding under these circumstances was weak, however, since it was observed only with very gentle detergents such as CHAPSO. Even relatively mild detergents such as Nonidet P-40 did not allow coprecipitation of the complex of AbEp and Ii.

Comparison of the intensities of the various Ii bands in Figure 4Go allowed a rough measurement of the amount of Ii bound to AbEp via sites that included the peptide binding groove or solely via other sites. The Ii precipitant from AbEpIi+ cells with anti-Ab was much more intense if lysates were prepared in CHAPSO than if lysates were prepared in Nonidet P-40. Since CLIP binding to the groove of class II should be stable to room temperature Nonidet P-40, this implied that a respectable percentage of the Ii bound to AbEp was engaged at sites other than the peptide binding groove. This conclusion was confirmed by the observation that the Ii band precipitated from AbEpIi+ Nonidet P-40 lysates by anti-Ab was of roughly the same intensity as that precipitated from AbEp CHAPSO lysates by anti-AbEp.

In summary, these experiments showed that Ii could indeed bind to AbEp at sites other than the peptide binding groove.

The low affinity Ii-class II interaction nevertheless resulted in efficient cleavage of the Ep peptide

The T cell hybridoma experiments described above showed that the Ep could be displaced from AbEp cells that were Ii+. However, the experiments did not show how frequently this happened or what percentage of AbEp chains had had their covalent peptide cleaved from them. The following experiment was therefore performed to study this.

Spleen cells were harvested from AbEpIi+ and AbEpIi- mice and incubated in tissue culture for 18 h with up to 10 ng/ml of IL-4 to increase their expression of class II and Ii. A separate experiment used spleen cells from C57BL/10 mice without pretreatment with IL-4. All cells were lysed, precleared, and immunoprecipitated with anti-AbEp or anti-Ab. Protein was eluted from the beads by boiling in SDS and was run on 12.5% polyacrylamide gels. The gels were then analyzed by Western blot using the mAb N22 (26), which reacts in Westerns with the ß-chain of Ab.

The results of this experiment were consistent with those of the pulse-chase analysis shown in Figure 3Go. In all immunoprecipitates there was no sign of ß-chains with unexpected molecular masses on the gels, indicating that almost all the class II precipitated in these experiments bore mature sugars (Fig. 6Go). The anti-Aßb Ab detected wild-type Aßb, with molecular masses of about 30 kDa, precipitated with anti-Ab from C57BL/10 cells (data not shown). As expected, no such material was precipitated from the same cells with anti-AbEp. Also as expected, both anti-Ab and anti-AbEp precipitated a single higher molecular mass Aßb-containing band from AbEpIi- cells. The molecular mass of this band, 34 kDa, was that expected for Aßb covalently bound to Ep. The absence of any lower molecular mass Aßb band precipitated from AbEpIi- cells was consistent with our previous observation that all the class II ß-chains in AbEpIi- mice remained covalently linked to the Ep (see above) (33).

In contrast, anti-Ab and anti-AbEp precipitated both Aßb-containing bands from AbEpIi+ cells, albeit in different proportions for the two Abs. Most of the ß-chains precipitated by anti-AbEp were of the higher molecular mass, confirming that most of the class II proteins that were occupied by Ep in these cells had ß-chains that were still covalently linked to the peptide. About 7% of these class II proteins were occupied by Ep, however (see the faint band in lane 1 of Fig. 6Go), even though the covalent linker between the ß-chain and Ep had been cleaved. These must be proteins from which Ep had not been displaced despite linker cleavage or which had rebound some of the free Ep present, because of cleavage, in the endosomes.

Anti-Ab immunoprecipitates revealed that in AbEpIi+ cells, the covalent linker had been cleaved on about 70% of all Aßb chains. Only 30% of the total Aßb remained covalently bound to the linker and peptide. The 34-kDa band that was immunoprecipitated by anti-Ab was of nearly the same intensity as that immunoprecipitated by anti-AbEp, demonstrating that the two Abs precipitated material with equal efficiency.

Assuming that the covalent linker would be cleaved from any class II protein that passed through endosomes on its way to the cell surface, these data put a lower limit of at least 70% on the percentage of class II proteins in AbEpIi+ cells that reached the cell membrane by this route. The 30% of uncleaved proteins might all have bypassed the endosomes. However, some of them might still be in the late Golgi before transit to endosomes. Thus, despite the covalently bound Ep, at least 70% of the class II proteins in AbEpIi+ cells must have bound Ii and passaged through the endosomal compartment. Ii must have bound these proteins in two ways, either at sites that did not include their peptide binding grooves or, in addition, at their peptide binding grooves, where it must have successfully competed with the covalent peptide.


    Discussion
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 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Cells and mice expressing the genes for the class II molecule Ab covalently linked to a peptide that can engage the peptide binding groove of Ab have proven useful for both biochemical and immunologic experiments (24, 35). These present studies showed that in the presence of Ii, a considerable number of the Ab molecules had their covalently linked peptide, Ep, clipped from them and displaced from their peptide binding grooves. There are two plausible models to explain the instability of the Ep peptide in the class II peptide binding groove in the presence of Ii. The CLIP region of Ii could have successfully competed in the endoplasmic reticulum with Ep for binding to the grooves of newly folded Ab molecules. This could have led to cleavage of the covalent linker in the endoplasmic reticulum or in the endosomes, the compartment to which Ii leads class II proteins to which it is stably bound.

Alternatively, in the endoplasmic reticulum Ii might be able to bind to Ab molecules with grooves already occupied by Ep. In this case Ii must have bound to Ab at a site(s) other than the peptide binding groove. Ab molecules associated with Ii in this way would then also travel to the cell surface via the endocytic route. In this acidic environment, the Ab molecule would undergo a conformational change to the looser conformation associated with the ability of class II molecules to bind peptides in this acidic environment, increasing both the on and the off rate of the peptide. Also, the covalent linker between Ab and Ep would be cleaved in this protease-rich environment, and the displaced Ep peptide would lose its high local concentration advantage over other peptides for binding to Ab.

It is remotely possible that Ab might bind Ep and CLIP in its groove simultaneously and that this complex could still bind anti-Ab, since class II has been shown to bind two peptides to its groove at the same time (36, 37). If this were so, then Ii might still be bound via the Ab groove to the class II protein. We think this is an unlikely explanation for our results, however, first because class II that is bound at its groove to more than one peptide is in the SDS unstable form, unlike the form found in our experiments. Secondly we think it is very unlikely that anti-AbEp would bind to Ab with such a distorted association with Ep.

We believe that both these mechanisms contribute about equally to the replacement on Ab of Ep by other peptides. Our data suggest that CLIP could to some extent compete with Ep for binding to the grooves of newly synthesized Ab proteins. This is because unstable Ab molecules appeared very quickly after their synthesis (Fig. 3Go) and also because some of the conjugates of Ii and Ab from AbEpIi+ cells were stable in a relatively harsh detergent, Nonidet P-40 (Fig. 4Go). On the other hand, Ii certainly could bind to some Ab proteins without engaging the peptide grooves of these molecules (Fig. 4Go), and the blots suggest that on AbEpIi+ cells, the amount of Ii associated with class II by this mechanism is about the same as that which has displaced Ep.

A summary of our current model of class II migration in AbEpIi+ cells is shown in Figure 7Go. Assuming that most of the class II in the cells had reached the cell surface, at least 70% of the protein must have proceeded to the cell surface via the endosomes, since the Ep-class II covalent linker was cleaved in 70% of the class II proteins. All this endosomal migration required Ii binding to class II. Ii drove this migration by binding in one of two ways, either by conventional means, including CLIP binding, or by binding at sites that did not include CLIP binding to the class II peptide binding groove. These two mechanisms appeared to operate with approximately equal efficiency in the cells.



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FIGURE 7. A model of class II maturation in AbEp mice. All migration of class II through the endosomes required Ii. In Ii- mice, AbEp migrated to the surface via a route that did not include the endosomes, thus allowing 100% retention of the linker and peptide. In Ii+ mice, 70% of the AbEp protein was translocated to the surface through the endosomal compartment. All endosomal migration required binding of Ii to class II. Ii drove the migration either by conventional CLIP binding or by binding to other sites on class II. In contrast, in wild-type mice, all Ab migrated through the endosomal compartment.

 
In the past, others have shown that Ii can bind class II at sites other than the peptide binding groove. Peptides from stretches of Ii that do not include CLIP bind to DR proteins, albeit with low affinity (18). Two other binding sites on Ii for class II, in addition to CLIP, have been identified recently (11). Additionally, Stumptner and Benaroch have indicated that binding of CLIP in the binding groove of the class II is not strictly required for peptide binding inhibition; rather, positioning of the CLIP region above the binding groove by flanking sequences is sufficient (11). Binding competition studies with superantigens or Abs have also suggested that there are binding sites on class II molecules for Ii that do not involve the peptide binding groove (19, 20, 21). On the other hand, in some reports class II proteins bearing peptides in their grooves cannot associate with Ii (22). These latter studies involved precipitation with Nonidet P-40, however, and the studies described in this paper show that treatment with Nonidet P-40 disrupts Ii association with class II bearing other peptides in its groove (Fig. 4Go).

This ability of Ii to engage class II at sites other than the peptide binding groove may have biologic significance. Different class II alleles vary greatly in their affinity for CLIP, and this was early evidence that CLIP was indeed binding in the peptide binding groove rather than at some other site (12, 38, 39, 40). For class II alleles that have a low affinity for CLIP, secondary binding sites may enhance the possibility that they bind Ii and thus are guided to the endocytic compartment where they can interact with exogenous antigenic peptides.

The experiments described here indicate that in the absence of Ii engagement, properly folded class II proteins can bypass the endocytic compartment on their way to the cell surface. Such an idea was suggested by the experiments of others (41, 42, 43, 44). Class II proteins that follow this route may not avoid the endocytic compartment completely, since it has recently been shown that the dileucine motif in the cytoplasmic tails of class II ß-chains causes the proteins to recycle through a particular type of endocytic compartment (44). Proteolysis is limited in this compartment, however (44), and, as demonstrated by our results in AbEpIi- cells, is clearly not powerful enough to cleave the linker between Ab and Ep.


    Acknowledgments
 
We thank Fran Crawford for assistance in setting up Westerns, and Janice White for help with T cell hybridomas.


    Footnotes
 
1 This work was supported by U.S. Public Health Service Grants AI17134, AI18785, AI22295, and A134893, and by an Irvington Institute Fellowship (to P.W.). Back

2 Address correspondence and reprint requests to Dr. Dr. Philippa Marrack, Department of Medicine, National Jewish Center, Howard Hughes Medical Institute, 1400 Jackson Street, K512, Denver, CO 80206. E-mail address: Back

3 Abbreviations used in this paper: Ii, invariant chain; CLIP, class II-associated invariant chain peptide; HRP, horseradish peroxidase; CHAPSO, 3-[(3-cholamidopropyl)dimethylammoniol-2-hydroxy-1-propanesulfonate]; COVA, chicken OVA323-339. Back

Received for publication April 1, 1998. Accepted for publication June 25, 1998.


    References
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 

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