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ß)2 Superdimers1
Department of Biochemistry, Molecular Biology, and Cell Biology, Northwestern University, Evanston, IL 60208
| Abstract |
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ß)2 superdimer,
potentially providing more stable and stimulatory interactions than can
be provided by the simple
ß heterodimer alone. In this study,
using chemical cross-linking, we provide evidence for the existence of
the superdimers on the surface of B cells. We further characterize the
superdimers and demonstrate that in lysates of B cells,
I-Ek dimers and superdimers are derived from the same
population of I-Ek molecules. Purified, I-Ek
molecules in solution also exist as a mixture of 60-kDa dimers and
120-kDa superdimers, indicating that I-Ek has an intrinsic
ability to form 120-kDa complexes in the absence of other cellular
components. Peptide mapping showed that the
ß and
(
ß)2 complexes are closely related and that the
superdimers do not contain additional polypeptides not present in the
dimers. The (
ß)2 complex displays thermal and pH
stability similar to that of the
ß complex, both being denatured
by SDS at temperatures above 50°C and at a pH below 5. These data
support the model that MHC class II has an intrinsic ability to assume
the (
ß)2 superdimeric conformation, which may be
important for interactions with the TCR and CD4
coreceptor. | Introduction |
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and ß subunits, each type I integral membrane
glycoproteins, with molecular mass of approximately 34 and 29
kDa, respectively (2, 3, 4). Upon synthesis in the endoplasmic reticulum,
the
- and ß-chains immediately associate and assemble
noncovalently with a third protein, the invariant chain
(Ii),4 forming a nine-chain
(
ßIi)3 complex (5, 6). The Ii serves both to prevent
peptides from binding to the class II molecules en route to the
appropriate subcellular site for peptide binding (7, 8, 9), and to direct
the class II molecules to that site (10, 11, 12). Ii is proteolytically
removed from the class II molecules in the peptide-loading compartments
(13, 14, 15), allowing the class II molecules to bind antigenic peptides
(16, 17, 18). Peptide binding completes the protein-folding process and
maturation of class II molecules (19, 20). Upon antigenic peptide
binding, the association between the
- and ß-chains becomes
remarkably strong, withstanding the denaturing effects of SDS-PAGE at
room temperature in the absence of reducing agents (21, 22, 23).
Studies over the last several years have yielded a detailed picture of
the structure of class II molecules (reviewed in 24 . The
three-dimensional structures of the human class II molecules, HLA-DR1
and HLA-DR3 (25, 26, 27, 28, 29, 30), and the mouse class II molecule I-Ek
(31) have been determined by x-ray crystallography. The binding site
for CD4, the Th cell coreceptor for class II molecules, has been mapped
to a loop in the ß2 domain (32, 33, 34) and possibly the
2 domain (25, 35). One striking feature of the class II
crystal structures is that the
ß heterodimer dimerized with itself
to form an (
ß)2 complex. The fact that these dimers of
ß heterodimers, or superdimers, appeared in several different
types of DR crystals, as well as in I-Ek crystals, suggests
that the tendency to superdimerize may represent an intrinsic property
of MHC class II molecules (reviewed in 36 . It has been postulated
that the superdimerization of class II molecules may serve to both
facilitate the activation of T cells by cross-linking TCRs and
signaling the APC to express essential costimulatory molecules for T
cell activation (25). These authors envisioned a synergistic process in
which a pair of TCRs interacts with a pair of class II molecules,
resulting in stable, dimerized class II-TCR complexes. Indeed, the
x-ray crystal structures of the ß-chain (37) and the V
domain (38)
of the TCR have been solved, and the V
domain shows a tendency to
form pairs of homodimers potentially able to interact with two class II
molecules (38); however, homodimers were absent in the heterodimeric
TCR-
ß structures (39, 40). Recently, Reich et al. (41) showed that
TCR/peptide-MHC class II complexes oligomerized in solution in a
ligand-dependent fashion to form supramolecular structures containing
two to six TCR/peptide/MHC class II complexes. These results provided
direct evidence for models of T cell signaling based on specific
multimerization of TCR/peptide/MHC complexes. Others have hypothesized
that CD4 oligomerization may promote MHC class II and TCR
oligomerization (42). The model of CD4-mediated oligomerization is
attractive because it does not depend upon two MHC class II molecules
containing identical or closely related antigenic peptides required for
TCR dimerization.
Our previous studies provided evidence for the existence of both a
60-kDa
ß heterodimer and a 120-kDa (
ß)2
superdimer of the mouse I-Ek molecules, in detergent
lysates of B cells (43). A mAb with demonstrated specificity for the
(
ß)2 superdimer inhibited a low affinity, but not a
high affinity T cell response, suggesting that the superdimers exist on
the B cell surface and that they may play a role in presenting low
affinity Ags (43). Subsequently, Roucard et al. (44) provided
biochemical evidence that HLA-DR existed as a superdimer in detergent
solutions. Very recently, Cherry et al. (45), using single-particle
fluorescence imaging, showed that HLA-DR exists as both dimers and
superdimers on the surfaces of human fibroblasts transfected with the
genes encoding HLA-DR
and ß and Ii, and estimated that 25% of
class II molecules were in the superdimer form. In this study, using
chemical cross-linking, we demonstrate that the mouse I-Ek
superdimer exists on the surface of B cells in the absence of
detergent. We also provide evidence that both
ß and
(
ß)2 are derived from a single population of
I-Ek molecules in B cell lysates and that purified
I-Ek in detergent solution assumes both
ß dimers and
(
ß)2 superdimers. The class II superdimers are present
in significant amounts, are free of components other than
- and
ß-chains, and have the same general properties of SDS stability as
ß complexes.
| Materials and Methods |
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The mouse mAbs 17-3-3S (46) and Y-17 (47), which recognize
different but overlapping determinants on the I-Ekß-chain
(48, 49, 50, 51), were obtained from hybridomas provided by American Type
Culture Collection (ATCC, Manassas, VA). 17-3-3S is of the IgG2a,
isotype, and Y-17 is of the IgG2b,
isotype. The mAbs were purified
by protein A-Sepharose chromatography. The Ii-specific rat mAb IN-1
(isotype IgG2b,
) was kindly provided by Dr. N. Koch (University of
Bonn, Bonn, Germany). The isotype control mAb IgG2a,
was purchased
from PharMingen (San Diego, CA), and rat IgG was purchased from Jackson
ImmunoResearch (West Grove, PA). The horseradish peroxidase
(HRP)-conjugated secondary Abs, rabbit Abs specific for mouse IgG2a,
and goat Abs specific for rat IgG heavy and light chains were obtained
from Zymed Laboratories (South San Francisco, CA).
The B cell lymphoma CH27 (52) was characterized and kindly provided by Dr. G. Haughton (University of North Carolina, Chapel Hill, NC). The mouse T cell hybridoma TPc9.1 generated in this laboratory is specific for cytochrome c presented by I-Ek-expressing APC, and secretes IL-2 upon activation (53, 54). The CTLL-2 cell line (55), obtained from ATCC, is an IL-2-dependent cell line. All cells were grown in complete medium (CM) (56) containing 15% FCS (15% CM). The CTLL-2 cells were maintained in 15% CM containing 10% T-Stim (Collaborative Biomedical Products, Bedford, MA) as an IL-2 source.
Immunoprecipitation
CH27 cells (2.5 x 106 cells/ml) were incubated in Met- 5% CM for 30 min, labeled with [35S]Met,Cys (NEN, Wilmington, DE) at 150 µCi/ml for 30 min, and washed in 15% CM. The cells were cultured in 15% CM at 3 x 105 cells/ml for 4 h. At the conclusion of the chase, cells were washed twice in cold PBS and lysed at 5 x 106 cells/ml in ice-cold Nonidet P-40 lysis buffer (50 mM Tris-HCl, pH 7.6, 150 mM NaCl, 5 mM EDTA, and 0.5% Nonidet P-40) containing 200 µg/ml PMSF, 25 µg/ml aprotinin, and 10 mM iodoacetamide. The lysate was divided into two equal portions of 5 x 106 cell equivalents each, centrifuged at 16,000 x g for 30 min at 4°C, and precleared twice with 200 µl protein A-Sepharose (Pharmacia, Piscataway, NJ) slurry. I-Ek was immunoprecipitated with mAbs 17-3-3S or Y-17 and 60 µl protein A-Sepharose slurry at 4°C. Supernatants were precipitated a second and third time with 30 µg mAb and 60 µl protein A-Sepharose slurry. Beads were washed three times with ice-cold Nonidet P-40 wash buffer (50 mM Tris-HCl, pH 7.6, 150 mM NaCl, 5 mM EDTA, and 0.2% Nonidet P-40). Bound proteins were eluted with 80 µl of nonreducing SDS-loading mixture (250 mM Tris-HCl, pH 6.8, 50% (v/v) glycerol, 5% (w/v)). Eluates were subjected to 10% SDS-PAGE and fluorography using Fluoro-Hance (Research Products International, Mt. Prospect, IL).
Chemical cross-linking
CH27 cells (1.6 x 106 cells/ml) were labeled with [35S]Met,Cys (150 µCi/ml) for 14 h at 37°C. The cells were washed with ice-cold PBS at pH 8.5 (PBS 8.5). The cells were resuspended in PBS 8.5 at a concentration of 25 x 106 cells/ml, and aliquots (200 µl) were incubated with 2 µl of a 200 mM solution of a cross-linking reagent in DMSO or 2 µl of DMSO alone for 2 h at 4°C. The cross-linking reagents tested included: dithiobis[succinimidylpropionate] (DSP); 1,5-difluoro-2,4-dinitrobenzene (DFDNB); 3,3'-dithiobis[sulfosuccinimidylpropionate] (DTSSP); ethyleneglycolbis[succinimidylsuccinate] (EGS); bis[sulfosuccinimidyl]suberate (BS3); dimethyladipimidate.2HCl (DMA); dimethylpimelimidate.2HCl (DMP); disulfosuccinimidyltartarate (sulfo-DST); and dimethyl 3.3'-dithiobispropionimidate.2HCl (DTBP) (Pierce, Rockford IL). The cross-linking was quenched by adding 20 µl of 1 M glycine and incubating at 4°C for 5 min. The cells were pelleted and lysed in 1 ml Triton X-100 lysis buffer (50 mM Tris-HCl, pH 7.6, 150 mM NaCl, 5 mM EDTA, 0.02% sodium azide, and 1% Triton X-100) containing 200 µg/ml PMSF. I-Ek was immunoprecipitated with mAbs Y-17 or 17-3-3S, as described above. The bound I-Ek was eluted from the protein A-Sepharose with 40 µl of SDS-loading mixture alone or in the presence of either ß-mercaptoethanol (2% v/v) or iodoacetamide (10 mM). The samples were centrifuged to pellet the protein A-Sepharose, the eluates were removed and either boiled for 5 min or not, and subjected to 10% SDS-PAGE. Where indicated, bands were excised from the gel, rehydrated as described below, and subjected to 8% SDS-PAGE under reducing conditions.
Purification of I-Ek
CH27 cells were grown, lysed, and I-Ek purified, as described (54), with the following modifications. The mAbs 17-3-3S and Y-17 were coupled to CNBr-activated Sepharose 4B (Pharmacia Biotech, Uppsala, Sweden) and used for affinity chromatography of I-Ek. I-Ek was eluted using ß-octylglucoside (ß-OG) elution buffer (15 mM triethanolamine, pH 11.5, 140 mM NaCl, and 30 mM ß-OG), neutralized with a measured amount of 1 M 2-(N-morpholino)ethanesulfonic acid, pH 5, dialyzed against PBS 30 mM ß-OG, concentrated in a centrifuge microconcentrator (Centricon 10; Amicon, Beverly, MA), and centrifuged through a 0.2-µm filter (Schleicher & Schuell, Keene, NH). Protein concentration was determined by bicinchoninic assay (Micro BCA Assay; Pierce, Rockford, IL).
Immunoblotting
I-Ek purified by immunoaffinity chromatography on a
Y-17 mAb column was divided into aliquots of 8 µg each, diluted 1/1
in nonreducing SDS-loading mixture, and subjected to 10% SDS-PAGE
without boiling. Proteins were transferred to 0.2-µm-pore
nitrocellulose membrane (Schleicher & Schuell) at 0.5 amps for 2
h. The membrane was Ponceau S stained and cut into strips. The strips
were soaked in 150 mM NaCl, 10 mM sodium phosphate, pH 7.4 (PBS),
containing 5% (w/v) nonfat dry milk and 0.01% NaN3,
washed in PBS containing 0.1% (v/v) Tween-20 (PBS Tween), and soaked
2 h in a 3 µg/ml solution of one of the following primary mAbs:
17-3-3S, mouse IgG2a,
, IN-1, or rat IgG at 3 µg/ml. These primary
mAbs were diluted in PBS Tween containing 1% (w/v) BSA. The strips
were washed four times in PBS Tween and soaked in a 1/10,000 dilution
of either HRP-rabbit anti-mouse IgG2a or HRP-goat anti-rat IgG
for 30 min. The strips were washed four times in PBS Tween, and
developed using enhanced chemoluminescence (ECL; Amersham, Arlington
Heights, IL).
Silver staining
Gels were fixed in 30% ethanol, 10% acetic acid, then soaked in 1 mg/ml sodium thiosulfate, 30% ethanol, and 10 mM sodium acetate, pH 6, for 30 min. The gels were then washed thoroughly in distilled water, and soaked in 0.1% silver nitrate, 0.01% formaldehyde for 30 min. The gel was developed in 2.5% sodium carbonate, 0.02% formaldehyde, and the development was arrested by glacial acetic acid to yield a final concentration of 5% acetic acid. Gels were soaked in glycerin and stored in plastic.
Gel electroelution
I-Ek complexes were analyzed after electrophoresis by excising bands and electroeluting the proteins from the polyacrylamide for 100 V-h into 300 µl of 4x SDS-PAGE electrode buffer using a SixPac GE200 Gel Eluter (Hoefer Scientific Instruments, San Francisco, CA). This volume was concentrated in a Centricon 10 to a final volume of 50 µl, diluted 1/1 with SDS-loading mixture containing 4% (v/v) ß-mercaptoethanol, boiled 10 min, subjected to SDS 10%-PAGE, and silver stained.
Peptide mapping
Peptide mapping of I-Ek complexes was performed by the method of Cleveland et al. (57), as modified by Lamb and Choppin (58). [35S]Met, Cys-labeled I-Ek was synthesized by growing CH27 cells for 21 h at 1 x 106 cells/ml in Met-Cys- 5% CM containing 45 µCi/ml [35S]Met,Cys. The cells were washed and lysed, and the I-Ek was purified, as described above. A 10-µg aliquot of I-Ek was electrophoresed without reducing or boiling. The gel was dried and exposed to film, and the 60- and 120-kDa I-Ek bands were excised. The gel pieces were rehydrated by soaking in sample buffer (SB, 0.125 M Tris-HCl, pH 6.8, 0.1% SDS, and 1 mM EDTA) containing 0.5% DTT for 45 min, and inserted into the wells of a 12% SDS polyacrylamide gel and overlaid with 20 µl SB containing 20% glycerol/bromphenol blue and 0.5% DTT. The gel pieces were further overlaid with 20 µl of 200 µg/ml Staphylococcus aureus V8 protease (Promega, Madison, WI) in SB containing 10% glycerol, and the gel was electrophoresed. When the dye front passed the stacking gel/separating gel interface, the current was turned off for 30 min to allow the protease to digest the I-Ekin situ. The gel was then run for the remainder of the electrophoresis as usual and subjected to fluorography.
Peptide presentation assay
For presentation of purified I-Ek, I-Ek, purified by immunoaffinity chromatography on either 17-3-3S or Y-17 mAb columns, was serially diluted in PBS across a 96-well tissue culture plate starting at 1 µg/well, in a final volume of 0.1 ml. The plate was incubated for 4 h at 25°C, then washed three times with 0.15 ml citrate buffer (100 mM sodium citrate, pH 4.5). A peptide corresponding to the C terminus of tobacco hornworm moth cytochrome c residues 82103 (THMc 82103) was synthesized, as detailed previously (59). THMc (82103) was added to each well at a concentration of 1 µM in citrate buffer, and incubated at 25°C for 5 h. The wells were then washed three times with 0.15 ml 5% CM. For presentation by APCs, CH27 cells were cultured at 1.3 x 106 cells/ml with 2 µM THMc (82103) for 2 h at 37°C, in a 5% CO2 atmosphere. The CH27 cells were fixed by incubation in 0.1% glutaraldehyde at 1 to 5 x 106 cells/ml in DMEM at 4°C for 30 s. The cell suspension was diluted twofold with 0.2 M lysine in DMEM and washed in 5% CM. The fixed CH27 cells were serially diluted across a 96-well tissue culture plate starting at 2 x 105 cells/well. TPc9.1 cells were added to the wells containing either the purified I-Ek or the CH27 cells at 5 x 104 cells/well in 200 µl and incubated at 37°C for 24 h. Supernatants (75 µl) were harvested and tested for IL-2 content by their ability to support the growth of the IL-2-dependent T cell line CTLL-2, as previously described (60).
Heat and pH treatment of I-Ek
For thermal stability experiments, the aliquots were diluted 1/1 with nonreducing SDS-loading mixture and incubated at 25°, 37°, 50°, or 65°C for 30 min. For pH stability experiments, the aliquots of Y-17 affinity-purified I-Ek were diluted in Tris/acetate buffers to give the final conditions of 25 mM Tris-HCl, 25 mM acetate, 1% (w/v) SDS, and 15% (v/v) glycerin, pH 3, 4, 5, 6, 7, 8, or 9. One aliquot was diluted in nonreducing SDS-loading mixture, pH 7.4, and one was diluted in ß-OG elution buffer, pH 11.5. The final volume of each sample was 50 µl. The samples were incubated at these pH levels for 30 min at 37°C and neutralized with 50 µl nonreducing SDS-loading mixture. Following treatment, all samples were electrophoresed on 10% SDS polyacrylamide gels and silver stained.
| Results |
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We previously reported the existence of both 60-kDa dimers and
120-kDa superdimers of the mouse class II I-Ek molecules in
detergent lysates of B lymphocytes by immunoprecipitation using the
I-Ek-specific mAb Y-17, which differentially recognized the
120-kDa superdimeric form of I-Ek (43). We further showed
by Western blotting of the B cell lysate that the existence of the
120-kDa superdimer was not dependent on the presence of the Y-17 mAb
(43). To determine whether the superdimer exists on the surfaces of B
cells in the absence of detergents, B cells were treated with chemical
cross-linking reagents to covalently cross-link the components of the
superdimer. Because it is difficult to predict the ability of a
chemical cross-linking reagent to covalently link the components of an
oligomeric structure, several chemical cross-linkers were tried,
including: DTSSP, DSP, DFDNB, EGS, BS3, DMA, DMP,
sulfo-DST, and DTPB. Treatment of B cells with three cross-linkers
(DSP, DTSSP, and DFDNB) resulted in some degree of covalent
cross-linking of the
- and ß-chains within the 60-kDa dimer.
However, only DFDNB showed covalent cross-linking of the
(
ß)2 superdimer. The results for DFDNB and DSP are
shown (Fig. 1
). DSP is a long (12A°)
homobifunctional NHS-ester NH2-linker that cross-links
through -NH2 amines. The presence of a disulfide bond
within DSP allows for reversal of cross-linking with a reducing reagent
(61). DFDNB is a small (3A°) bifunctional aryl halide that reacts
with -NH2 groups to form a nonreducible bond (62).
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- and ß-chains
(boiling with or without reduction). Immunoprecipitation of either
untreated cells or cells cross-linked with DSP or DFDNB using the Y-17
mAb yields the predicted 120-kDa (
ß)2 superdimers when
the samples are not boiled (Fig. 1
- and ß-chains, and the class II
molecules from DSP- and DFDNB-treated cells migrate as 60-kDa
ß
dimers (Fig. 1
- and ß-chains within the heterodimer. DFDNB
appears to be a more efficient cross-linker as compared with DSP, as
the immunoprecipitates from DFDNB-treated cells have less free
ß-chains compared with the immunoprecipitates from the DSP-treated
cells. The DSP- and DFDNB-cross-linked
ß dimers migrate slightly
differently, suggesting that the cross-links introduced into the
ß
dimers are not the same for the two different chemical cross-linkers.
In addition to the cross-linked 60-kDa
ß dimer, a 240-kDa band is
present in the immunoprecipitates from the DFDNB-treated cells. This
240-kDa band is the correct size to be as dimer of the superdimer or
(
ß)4. The 240-kDa band is only present in the Y-17
superdimer-specific immunoprecipitates, and not in the 17-3-3S
immunoprecipitates (Fig. 1
ß)2
superdimers. Reduction of the Y-17 immunoprecipitate also reduces the
DSP chemical cross-links in the 60-kDa dimers, resulting in free
-
and ß-chains. By densitometry, the cross-linked (
ß)2
superdimers in the reduced and boiled Y-17 immunoprecipitates represent
approximately 18% of the total population of class II molecules.
To further characterize the 240-kDa band, the band was excised,
rehydrated, and subjected to SDS-PAGE under reducing conditions. The
240-kDa band resolves into 240-, 120-, and 60-kDa bands (Fig. 1
C), indicating that the 240-kDa band is a disulfide-linked
oligomer of DFDNB-cross-linked 60-kDa (
ß) dimers and 120-kDa
(
ß)2 superdimers. When the Y-17 immunoprecipitates
from the DFDNB-treated cells are reduced, all of the 240-kDa resolves
as 120-kDa superdimers and 60-kDa dimers (Fig. 1
A). The
failure to completely reduce the excised, rehydrated 240-kDa band
(Fig. 1
C) may be due to some degree of irreversible
denaturation of the material in the gel. A disulfide-linked oligomer of
class II molecules was unexpected because the predominant chemical
cross-linking reaction of DFDNB is through amines at the pH used in
this study (pH 8.5), although it is possible for DFDNB to cross-link
through sulfhydryl groups. However, the only free cysteines in the
I-Ek molecules are in the transmembrane region or buried in
the peptide binding site, making it unlikely that the 240-kDa
(
ß)4 was the result of DFDNB sulfhydryl cross-linking.
To determine whether disulfide bonds formed between DFDNB-cross-linked
ß and (
ß)2 in the immunoprecipitates,
iodoacetamide was added to the SDS SB to block free sulfhydryls. The
120-kDa, but not the 240-kDa band is present in iodoacetamide-treated
Y-17 immunoprecipitates of DFDNB-treated cells (Fig. 1
A),
indicating that the disulfide bonds were formed between
DFDNB-cross-linked superdimers in the immunoprecipitate. In the Y-17
immunoprecipitates, which are neither boiled nor reduced, the 240-kDa
band does not appear, suggesting that either the disulfide bonds are
formed during boiling or that in the absence of boiling the
(
ß)4 may aggregate and not enter the gel. The fact
that the 240-kDa (
ß)4 was not present in
immunoprecipitates from untreated cells or DSP-treated cells suggests
that the formation of the disulfide bond was favored between
DFDNB-cross-linked
ß and (
ß)2.
Taken together, the results presented in this study indicate that
treating cells with DFDNB results in covalently cross-linked 120-kDa
(
ß)2 superdimers, providing direct biochemical
evidence for the existence of the 120-kDa superdimers on the B cell
surface. Y-17 immunoprecipitation of DFDNB-treated cells also results
in the formation of a disulfide-linked 240-kDa (
ß)4
oligomer composed of DFDNB-cross-linked (
ß)2 and
ß.
The I-Ek 60-kDa dimer and 120-kDa superdimer are derived from the same cellular pool of I-Ek molecules
To determine whether class II molecules that form the 60-kDa dimer
versus the 120-kDa superdimers exist as one single or two separate
pools in cell lysates, exhaustive immunoprecipitations were performed.
CH27 cells were metabolically labeled with [35S]Met for
30 min, chased for 4 h, and lysed. The cell lysate was divided in
two, lysate 1 and lysate 2 (Fig. 2
).
Lysate 1 was subjected to two successive immunoprecipitations using the
ß dimer-specific mAb, 17-3-3S, followed by a single
immunoprecipitation using the (
ß)2 superdimer-specific
mAb, Y-17. Conversely, lysate 2 was immunoprecipitated twice using the
Y-17 mAb, then once using the 17-3-3S mAb. The immunoprecipitates were
subjected to SDS-PAGE without reducing or boiling, conditions under
which peptide-loaded
ß dimers are stable. The 17-3-3S mAb
immunoprecipitates I-Ek, which migrates as a 60-kDa
ß
band. The 17-3-3S mAb depleted nearly all of the I-Ek from
the lysate, leaving only a small amount to be immunoprecipitated by
Y-17, which migrates as a 120-kDa (
ß)2 band. The
I-Ek immunoprecipitated by Y-17 from lysate 2 also migrates
as a 120-kDa band. After two successive Y-17 immunoprecipitations, no
detectable I-Ek remained to be immunoprecipitated by
17-3-3S (Fig. 2
). This result indicates that the 60-kDa
ß
heterodimers and 120-kDa (
ß)2 superdimers are derived
from the same pool of I-Ek molecules in the cell lysate,
and that all class II
ß dimers can dimerize to form 120-kDa
superdimers.
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Our previous studies demonstrated the presence of 120-kDa
I-Ek complexes in cell lysates both by immunoprecipitation
and by immunoblotting (43). Cell lysates are complicated mixtures that
potentially contain cellular components that could affect
I-Ek superdimerization. To determine whether purified
I-Ek has the intrinsic ability to form 120-kDa complexes in
the absence of other cellular components, I-Ek was purified
by Y-17 immunoaffinity chromatography and analyzed by SDS-PAGE without
reducing or boiling. A portion of the gel was silver stained (Fig. 3
, right panel), and the
remainder was used to transfer the proteins to nitrocellulose for
immunoblotting. Immunoblots were probed with the mAb 17-3-3S and its
isotype control mAb mouse IgG2a,
, or the Ii-specific mAb IN-1 and
its isotype control mAb rat IgG2b,
. The 17-3-3S immunoblots were
stained with a IgG2a-specific Ab, and the IN-1 immunoblots were stained
with rat IgG heavy and light chain-specific Ab and developed by ECL
(Fig. 3
, left and center panels). Two major bands
are detected in the silver-stained gel having molecular mass of
60 and 120 kDa, and these bands stain positively for I-Ek
in immunoblotting. Thus, the Y-17 immunoaffinity-purified
I-Ek appears to be a mixture of both 60-kDa dimers and
120-kDa superdimers. It should be noted that in contrast to
the preparations of Y-17 immunoaffinity-purified I-Ek, the
Y-17-immunoprecipitated I-Ek is almost entirely in the
superdimer form (see Fig. 3
). This difference may be explained by the
fact that during immunoaffinity purification, the I-Ek is
eluted from the Y-17 column at high pH and, as will be shown below
(Fig. 8
), the superdimers dissociate at extreme pHs. Thus, it is likely
that the mixture of dimers and superdimers in the Y-17
immunoaffinity-purified preparation represents the reassociation of
I-Ek molecules at neutral pH.
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The IN-1 immunoblot of the affinity-purified I-Ek preparations shows bands at 35 to 40 kDa and 65 kDa, indicating that Ii monomers and disulfide-linked dimers (5) are present in this I-Ek preparation. The 65-kDa Ii dimer migrates slightly higher than the bulk of the 60-kDa I-Ek. Significantly, the 120-kDa band does not stain with the IN-1 mAb, indicating that it does not contain Ii. Taken together, these results provide evidence that affinity-purified I-Ek forms both 60- and 120-kDa complexes in vitro, and that these complexes do not contain Ii or Ab.
Analysis of I-Ek molecules purified using the
dimer-specific 17-3-3S mAb also showed these to be a mixture of dimers
and superdimers (see Fig. 7
below). Moreover, the ratio of
ß
dimers to (
ß)2 superdimers in Y-17 and 17-3-3S
affinity-purified preparations was the same. In addition, the
I-Ek purified using the Y-17 or the 17-3-3S Ab were
functionally equivalent in their ability to present peptide in vitro.
To demonstrate this, the purified I-Ek preparations were
adsorbed to tissue culture plates, incubated with the cytochrome
c peptide THMc (82103) at pH 4.5, and cultured
with the I-Ek-restricted cytochrome c-specific T
cell hybrid TPc9.1. The two sources of I-Ek were
equivalent in their ability to stimulate the TPc9.1 cells
(Fig. 4
). The magnitude of stimulation is
the same as that attained by whole CH27 cells and peptides.
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- and ß-chains
To determine the composition of the 120-kDa band observed in
preparations of purified I-Ek, both the 60- and the 120-kDa
bands were excised from gels. The proteins were electroeluted, reduced,
boiled, reelectrophoresed on a second gel, and silver stained (Fig. 5
). Under these conditions, the
constituent proteins in both of the 60- and 120-kDa bands migrate as
two bands,
and ß, of 34 and 29 kDa, respectively. The excised
120-kDa band may have also contained peptide that was not resolved in
the system.
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- and ß-chains shown in Figure 5
ß heterodimer, the superdimer (
ß)2 complex.
|
ß and 120-kDa
(
ß)2 I-Ek complexes to SDS denaturation
Having established that purified I-Ek has the tendency
to form
ß and (
ß)2 complexes in detergent
solution, we examined the stability of these complexes to SDS
denaturation. The observation that these complexes exist during
SDS-PAGE indicates that they are held together either by very stable
noncovalent associations, or by covalent bonds, perhaps an interchain
disulfide bond, which stabilizes the complex against SDS-mediated
denaturation. To address this question, Y-17-purified I-Ek
was incubated in the absence of reducing agents at various temperatures
for 30 min, in the presence of 2.5% SDS at pH 6.8 before
electrophoresis on a 10% SDS polyacrylamide gel (Fig. 7
). At 25° or 37°C, the
I-Ek migrates as
ß and (
ß)2
complexes. However, at 50°C, there is partial denaturation of both
the
ß and (
ß)2 complexes into individual
- and
ß-chains. At 65°C, all of the I-Ek is denatured into
free
- and ß-chains. The ability of these complexes to become
denatured solely by the addition of heat indicates that they are
noncovalent complexes. Both the
ß and (
ß)2 appear
to be partially decomposed at 50°C, suggesting that the two complexes
have similar thermal stabilities. Since thermal denaturation does not
result in an increase in the amount of (
ß)2, it is
unlikely that this complex forms as a result of nonspecific aggregation
of I-Ek.
The superdimer (
ß)2 complex has previously been
observed in immunoprecipitates of newly synthesized I-Ek
that has acquired peptide (43). The intravesicular pH of the
subcellular compartment in which peptide loading onto class II
molecules occurs has been measured to be approximately 4.6 (13). To
examine the pH stability of
ß and (
ß)2 complexes,
aliquots of affinity-purified I-Ek were incubated at
various pH levels for 30 min at 37°C in the presence of 2.5% SDS.
These aliquots were then neutralized, electrophoresed on a 10% SDS
polyacrylamide gel, and silver stained (Fig. 8
). Both
ß and (
ß)2
complexes are stable at pH levels between 6 and 9. At pH 5, these
complexes partially denature and run as individual
- and ß-chains.
At pH 4 and 3, the complexes completely dissociate into the free
chains. The dissociation is accompanied by a conversion of a portion of
the
ß heterodimers into a complex having a m.w. slightly higher
than that of the major
ß band, the compact heterodimer. This may
be the floppy I-Ek, a conformational intermediate observed
by Dornmair et al. (22) during the denaturation of compact
ß
heterodimers to individual
- and ß-chains. At pH 11.5, the
(
ß)2 and compact
ß complexes are unstable (Fig. 8
). Taken together, these studies demonstrate that
ß and
(
ß)2 complexes display similar pH and thermal
stability to SDS denaturation.
| Discussion |
|---|
|
|
|---|
ß dimers and
(
ß)2 superdimers, respectively (43). The molecular
basis of the apparent specificity of these two mAbs is not known. Our
previous flow-cytometric analysis showed that these mAbs bind
simultaneously to I-Ek molecules expressed on cell surfaces
and show no competition for binding to I-Ek (43).
Mutational studies of I-Ek have shown that the epitopes
recognized by the 17-3-3S and Y-17 mAb are largely distinct (48, 51).
However, the epitopes for these two mAbs must be somewhat overlapping,
because immobilized purified 17-3-3S/I-Ek complexes were
shown not to bind to Y-17 by plasmon resonance (49). The best
assessment of the epitopes that these two mAbs recognize is that
17-3-3S reacts with the ß1 domain, while Y-17 reacts
either with an epitope on ß1, which is dependent on the
proximal
1 domain for conformation, or on an epitope
including both the ß1 and
1 domains (50).
The exhaustive immunoprecipitation analysis presented in this work
confirms the specificity of the 17-3-3S and Y-17 mAbs for the
ß
heterodimers and (
ß)2 superdimers, respectively, and
demonstrates that the
ß and (
ß)2 complexes are
derived from the same pool of I-Ek in cell lysates. Thus,
all of the I-Ek molecules in the cell are capable of
forming superdimers, under the conditions used in this study.
Exhaustive immunoprecipitation also illustrates that the mAbs
themselves can influence the conformation of the I-Ek. The
form of the I-Ek complex observed following SDS-PAGE
(
ß or (
ß)2) depends solely on which mAb was used
for immunoprecipitation (17-3-3S or Y-17). Thus, it is likely that the
mAbs actually drive the I-Ek conformation toward one form
or the other during immunoprecipitation. The 17-3-3S epitope may block
superdimer formation by interfering with the
ß1-ß1 interactions (25) at the most
membrane-distal part of the (
ß)2 superdimer interface.
Y-17 may avoid such interference, and may actually bind to a
ß1-
1 epitope of an
ß heterodimer with
one F(ab')2 arm and to another
ß1-
1 epitope with another Fab arm, thus
bringing two
ß heterodimers together to form the
(
ß)2 superdimer.
Because of the influences these mAbs may have on I-Ek
conformation, it was important to demonstrate the presence of the
I-Ek superdimer in the absence of the Y-17 mAbs. This was
accomplished in three ways. First, as previously shown, both 60-kDa
ß and 120-kDa (
ß)2 complexes were detected by
immunoblotting of untreated whole cell lysates (43). Second, both
ß and (
ß)2 complexes were observed in
preparations of affinity-purified I-Ek. Third, the 120-kDa
superdimer can be chemically cross-linked on the cell surface in the
absence of the Y-17 mAb. Therefore, while (
ß)2
superdimer formation can be facilitated by the Y-17 mAb,
I-Ek has the intrinsic ability to superdimerize and does
not require Y-17 to do so.
It was also important to demonstrate that the superdimers exist in the
absence of detergent, given the potential for detergent-induced
artifactual associations. The fact that the superdimer did not appear
in all class II preparations, in particular in the 17-3-3S
immunoprecipitates, argues against detergent-induced class II
dimerization. If exposure to SDS induces dimerization, then the
17-3-3S-immunoprecipitated class II molecules, which as discussed above
have the inherent ability to dimerize, should dimerize. In addition,
our previous studies, showing a differential effect of the Y-17 and
17-3-3S mAbs on the presentation of peptide by B cells, suggested that
the superdimers did indeed exist on B cell surfaces (43). In this
study, we provide direct biochemical evidence for the presence of
superdimers in the absence of detergent by showing that the
(
ß)2 superdimer can be chemically cross-linked on B
cell surfaces using the cross-linker DFDNB. DFDNB chemically
cross-linked the
- and ß-chains in
ß dimers as well as
portions of (
ß)2. In addition, we observed a
phenomenon seen only with chemically cross-linked
ß and
(
ß)2, which was further oligomerized in vitro to form
(
ß)4 stabilized by disulfide bonds. Because the
(
ß)4 did not form in the 17-3-3S immunoprecipitates,
we assume that the Y-17 mAb held the (
ß)2 in a
position that facilitated the disulfide bond formation.
The presence of (
ß)2 class II superdimers was
confirmed very recently by Cherry et al. (45), who used single-particle
fluorescence imaging to demonstrate the presence of HLA-DR superdimers
on the surface of a fibroblast cell line transfected with the genes
encoding HLA-DR
- and ß- and Ii chains. Their results also
indicated the existence of class II oligomers larger than
(
ß)2. They report that approximately 25% of class II
molecules on the cell surface are present as superdimers. By
densitometry of the DFDNB-cross-linked (
ß) and
(
ß)2, we estimated that approximately 18% of class II
molecules on the cell surface are present as superdimers in good
agreement with the estimate of Cherry et al.
The formal proof that the 120-kDa band seen in this study in
preparations of I-Ek purified by immunoaffinity
chromatography is an (
ß)2 complex was achieved by a
comparison of the 60- and 120-kDa complexes following fully denaturing
reelectrophoresis and peptide mapping. The similarity of the
polypeptide patterns derived from each complex by these two methods
verifies that they are composed of
- and ß-chains in the same
stoichiometric amounts. Therefore, the 120-kDa complex can only be a
dimer of the 60-kDa complex.
The nature of the 120-kDa (
ß)2 I-Ek
complex remains to be determined. The structure of this complex may be
similar to that which has been determined by x-ray crystallography of
I-Ek (31). Alternatively, the 120-kDa complex may be
stabilized by hydrophobic interactions between the transmembrane
regions of the
- and ß-chains. These two scenarios are not
mutually exclusive, as it has been established that specific residues
in the transmembrane domain of I-Ak facilitate assembly of
the
ß heterodimer (63). The 120-kDa complex could also be the
result of two I-Ek molecules binding to a single long
peptide. The ability of the Y-17 mAb to drive total 120-kDa complex
formation would argue against this possibility, because of the
improbability of having enough peptides present that are capable of
binding all I-Ek molecules in pairs, without having any
monomers, trimers, tetramers, etc.
The (
ß)2 superdimers observed in affinity-purified
I-Ek preparations seem to have a stability to SDS
denaturation similar to that of the
ß heterodimer. Both complexes
partially decomposed at 50°C, with total dissociation into
- and
ß-chains at 65°C. This heat-sensitive nature of I-Ek
under nonreducing conditions is evidence that the interactions involved
are noncovalent, and the data in this study are similar to those in
previous studies that showed that compact
ß heterodimers in ß-OG
micelles are stable at 50°C, but begin to dissociate at 65°C (22).
Thus, it would appear that the stability of the (
ß)2
superdimer to SDS denaturation depends on the stability of the
constituent
ß heterodimers themselves.
The pH stability exhibited by the (
ß)2 complexes
derived from affinity-purified I-Ek appears to correlate
with previously measured pH stabilities of I-Ek-peptide
complexes (22). Dissociation into free
- and ß-chains most likely
reflects the loss of the heterodimer-stabilizing peptide. Recent
studies have confirmed the longstanding model of a pH-dependent
conformational change in MHC class II to facilitate peptide binding
(64, 65). Furthermore, the intravesicular pH of the subcellular
compartment, where peptide loading onto MHC class II molecules occurs,
has been measured to be approximately 4.6 (13). While these conditions
used to test the stability of
ß and (
ß)2 complex
described in this study are certainly different from those found
in the peptide-loading compartment in vivo, these findings suggest that
(
ß)2 complexes may indeed be able to form
intracellularly upon peptide binding to I-Ek.
A class II superdimer would have potentially important implications for
the mechanism of T cell stimulation. One possibility is that a pair of
class II molecules might interact with a pair of TCRs to help
strengthen the rather weak affinity of MHC class II for the TCR (25).
This model is supported by the crystal structure of the TCR V
domain, which suggests an (
ß)2 TCR conformation
complementary to the HLA-DR1 structure (38). However, it is
statistically unlikely that both MHC class II molecules in a superdimer
would be filled with identical or closely related peptides, given the
large number of peptides available in an APC. Even if the superdimer
did contain two of the same peptides, simple dimerization of the TCR
alone may provide only weak activation. Reich et al. (41) recently
provided evidence for ligand-specific oligomerization of
TCR/peptide/MHC complexes to form complexes containing two to six
ternary complexes. The superdimers we observed may not be required for
TCR dimerization, but may indicate the intrinsic ability to oligomerize
when containing ligands for peptide-specific TCR.
Others have proposed that MHC class II superdimers may play a role in T
cell signaling through CD4, a mechanism that would be independent of
the peptides bound to MHC class II. These models depend largely on the
ability of the superdimer to cross-link or oligomerize CD4 (reviewed in
Refs. 42 and 66). The models are supported by evidence for multiple
sites on MHC class II that are important for CD4 binding. Originally,
the CD4 binding site was shown to lie only on the ß2
domain of HLA-DR (32, 33, 67). More recently, however, studies have
shown that there is a second site of interaction with CD4 on the
2 domain, oriented such that it cannot interact
simultaneously with the same CD4 molecule as the ß2 site
(35). To accommodate these data, either monomeric CD4 would cross-link
MHC class II monomers, or MHC class II superdimers would interact with
CD4 oligomers. It has recently been demonstrated that oligomers of CD4
are required for stable interaction with MHC class II (68), and an
interaction between CD4 tetramers and MHC class II superdimers has been
modeled (42). Thus, the weight of the data is consistent with a role
for MHC class II superdimers in the binding of CD4. Such interactions
of CD4 with the superdimer could contribute either to the overall
adherence of the T cell and the APC and/or stabilize the TCR/class II
dimer interaction. In this regard, it is interesting to note that the
superdimer-specific mAb Y-17 (43) had the same effect as a CD4-specific
mAb (53) on an Ag-specific T cell response, blocking the low affinity,
but not high affinity, T cell response. Finally, a mutational analysis
of residues on the putative dimer-dimer interface of HLA-DR3,
identified on the basis of the residues that participate in the HLA-DR1
superdimer (25), has not supported a critical role for these residues
in maintaining DR3 conformation peptide binding, or SDS-stable
heterodimer formation (69). However, this study did not directly
measure the ability of these mutant DR3 molecules to form superdimers.
In addition, these two residues represent only a small part of the
overall dimer-dimer interface, which encompasses more than 1300
Å2 of surface area and includes seven salt bridges (69).
The data presented in this study have verified that the full-length mouse MHC class II molecule I-Ek has the intrinsic ability to superdimerize in detergent micelles and remain stable during SDS-PAGE under nonreducing, nonboiled conditions. Superdimerization may only be one step in the formation of larger order MHC class II/TCR/CD4 multimers, but its effects should nevertheless be significant for both T cell and APC signal transduction.
| Footnotes |
|---|
2 Current address: R.W. Johnson Pharmaceutical Research Institute, Route 202, P.O. Box 300, Raritan, NJ 08869. ![]()
3 Address correspondence and reprint requests to Dr. Susan K. Pierce, Department Biochemistry, Molecular Biology and Cell Biology, 2153 N. Campus Drive, Northwestern University, Evanston, IL 60208. E-mail address: ![]()
4 Abbreviations used in this paper: Ii, invariant chain; ß-OG, ß-octylglucoside; BS3, bis[sulfosuccinimidyl]suberate; CM, complete medium; DFDNB, 1,5-difluoro-2,4-dinitrobenzene; DMA, dimethyladipimidate.2HCl; DMP, dimethylpimelimidate.2HCl; DSP, dithiobis[succinimidylpropionate]; DTSSP, 3,3'-dithiobis[sulfosuccinimidylpropionate]; ECL, enhanced chemoluminescence; EGS, ethyleneglycolbis[succinimidylsuccinate]; HRP, horseradish peroxidase; SB, sample buffer; sulfo-DST, disulfosuccinimidyltartarate; THMc, tobacco hornworm moth cytochrome c. ![]()
Received for publication January 21, 1998. Accepted for publication May 4, 1998.
| References |
|---|
|
|
|---|
immune response gene. Cell 32:745.[Medline]
ß heterodimers in endosomes. EMBO J. 11:411.[Medline]
and ß chains in CD4 function indicates a role for ordered oligomerization in T cell activation. J. Exp. Med. 182:779.
domain of a T cell antigen receptor. Science 270:1821.
ß T cell receptor structure at 2.5 A and its orientation in the TCR-MHC complex. Science 274:209.
molecules. J. Immunol. 136:3351.[Abstract]
ß dimers. J. Immunol. 152:1546.[Abstract]
residues involved in dimers of HLA-DR molecules. J. Immunol. 155:1210.[Abstract]
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