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Division of Clinical Immunology and Rheumatology, Department of Medicine, and
Division of Developmental and Clinical Immunology, Departments of Medicine and Pediatrics, University of Alabama, Birmingham, AL 35294
| Abstract |
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| Introduction |
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Two distinct molecular mechanisms were recently shown to cause C2D (5).
In type I C2D, a 28-bp deletion removes 9 bp of the 3' end of exon 6
and 19 bp of the 5' end of the adjoining intron of the C2 gene. This
deletion causes skipping of exon 6 during RNA splicing, resulting in a
shift of the reading frame and a premature termination codon (6). The
putative primary translation product of the mutant message would
contain 222 amino acid residues, but cannot be detected by biosynthetic
labeling of fibroblasts from C2D individuals (5). Type I C2D is in
strong linkage disequilibrium with the MHC haplotype HLA-A25, B18,
C2Q0, BfS, C4A4, C4B2, Drw2 (7). This extended haplotype occurs in
>90% of C2D individuals. In contrast, individuals with type II C2D
are rare, representing about 7% of all cases of C2D, and are
characterized by a selective block of C2 secretion, leading to the
retention of a full-length C2 polypeptide in the intracellular
compartment (5). Two published examples of type II C2D result from two
distinct missense mutations of amino acid residues apparently critical
for proper folding of the C2 polypeptide (8). One missense mutation
(C566T) located in exon 5 results in a Ser189
Phe
substitution and is associated with the HLA-A11, B35, DRw1 haplotype.
The other (G1930A) is located in exon 11, results in a
Gly444
Arg substitution, and is found in association with
the HLA-A2, B5, DRw4 haplotype.
Here we report a 9-yr-old African-American male with severe recurrent
pyogenic infections and undetectable serum C2 protein and total
hemolytic complement activity (CH50). Analysis of his genomic DNA
demonstrated that he carried two distinct C2D gene alleles. One was a
type I C2D allele and was inherited from his father; the other was
inherited from his mother and harbored a novel G392A transition in exon
3, causing a Cys111
Tyr substitution. As shown by
biosynthetic labeling experiments using COS cells transfected with
mutant C2 cDNA, the C111Y mutation results in an almost complete block
of C2 protein secretion. Thus, the novel C111Y mutation, which in this
family is associated with the haplotype HLA-A28, B58, DR12, leads to
type II C2D.
| Materials and Methods |
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A 9-yr-old African-American male was referred for evaluation of his complement system because of his third serious bacterial infection. He had developed meningitis at 4 and 6 yr of age caused by Hemophilus influenzae and Streptococcus pneumoniae, respectively. His most recent hospitalization was for septic arthritis of the right shoulder, again due to S. pneumoniae. All three infections had responded well to antibiotics. Laboratory evaluation had demonstrated undetectable total serum hemolytic complement activity (CH50).
ELISA for C2 and factor B
The concentration of C2 was measured by a solid phase ELISA using the IgG fraction of a rabbit anti-C2a serum as first Ab and the anti-C2b mAb 3A3.3 (9) as second Ab. The assay was developed with affinity-purified alkaline phosphatase-conjugated goat anti-mouse IgG (Southern Biotechnology Associates, Birmingham, AL), followed by Sigma 104 phosphatase substrate (St. Louis, MO). Color development was measured at 405 nm by using a Vmax kinetic microplate reader (Molecular Devices, Menlo Park, CA). The concentration of factor B was measured by a similar ELISA, using the IgG fraction of rabbit anti-Bb serum and the anti-Ba mAb HA41A (10) as the first and second Abs, respectively. A standardized serum was used to construct standard curves for both assays.
Analysis of genomic DNA for type I C2D
Genomic DNA was isolated from the buffy coat fraction of blood samples collected in EDTA (11). The genomic DNA from each member of the probands family (J. C. kindred) was subjected to PCR using the oligonucleotide pair, 5'-GCCTGGGCCGTAAAATCCAAAT-3' and 5'-GCACAGGAAGGCCTCTGCTGCA-3', which was designed to amplify exon 6 of the C2 gene and its downstream boundary. Agarose gel electrophoresis of PCR products amplified from normal and type I C2D alleles yielded fragments of 174 and 146 bp, respectively. All oligonucleotides were synthesized in a model 394 DNA/RNA synthesizer (Applied Biosystems, Foster City, CA).
PCR/single-strand conformation polymorphism (SSCP)
PCR/SSCP was used as a first step in the search for mutations in
the C2 gene. Primers for exon-specific PCR for all 18 exons of the C2
gene were synthesized on the basis of the flanking intronic sequences
(12). PCR was conducted using 0.2 µg of genomic DNA, 1 µM of each
oligonucleotide primer, 200 µM of each dNTP, 2 µCi of
[
-32P]dCTP (Amersham, Arlington Heights, IL), and
0.5 U of Taq polymerase (AmpliTaq, Perkin-Elmer/Cetus, Norwalk, CT) in
a final reaction volume of 25 µl. Samples were overlaid with 25 µl
of mineral oil to avoid evaporation and were subjected to 30
amplification cycles using a Tempcycler (Coy Laboratory Products, Ann
Arbor, MI). Each cycle consisted of 1-min denaturation at 95°C, 1-min
annealing at different temperatures depending on the melting
temperature (Tm) of each primer, and 1- to 1.5-min extension at 72°C.
Electrophoresis of the PCR products was conducted at 20 watts and
25°C for 4 to 4.5 h in 6% nondenaturing acrylamide gels
containing 5% glycerol or at 4°C without glycerol, using 45 mM
Tris-borate/1 mM EDTA buffer, pH 8.3. The single-stranded DNA fragments
were visualized by autoradiography.
Nucleotide (nt) sequencing
PCR products of 280 and 241 bp were amplified from exons 3 and 7, respectively, using the oligonucleotide pairs, 5'-ATCCAGTCCTATATTCCCCAC-3' and 5'-AGGTTCCCCAGGAGACCCCAGC-3' for exon 3 and 5'-TCCCCTTTGGCTTCAGGGCCC-3' and 5'-AGAGGGTCCATCTTCTCCTCTC-3' for exon 7. PCR products were purified by electrophoresis in 2.5% low melting point agarose gel (Sea Plaque Agarose, FMC, Rockland, ME) and subcloned into the pCR II vector using the TA cloning kit (Invitrogen, San Diego, CA). Recombinant plasmids were purified and alkali denatured to produce templates. The nt sequencing was performed by the dideoxy chain termination method, using modified bacteriophage T7 DNA polymerase (13). The complete nt sequences, including boundaries, of exons 3 and 7 of the C2 gene were determined in both orientations. Sequence data were analyzed using the MacVector Sequence Analysis Software (International Biotechnologies, New Haven, CT). The nt sequencing of exon 3 amplified from genomic DNA of family members was performed using an ABI PRISM 377 DNA Sequencer and the ABI PRISM Dye Terminator Cycle Sequencing Ready Reaction Kit (Perkin-Elmer, Foster City, CA), according to the manufacturers instructions.
Construction and expression of mutant C2 cDNA
The C2 cDNA C2SacR (14) cloned into the expression vector pcDNA3 (Invitrogen) was used to construct mutant C2 cDNA. C2SacR was derived from the full-length C2 cDNA C2HL53 (15) by deletion of the first 352 bp from the 5' untranslated region and by elimination of the internal EcoRI site by site-directed mutagenesis to facilitate transfer between vectors. Since the mutation is silent, C2SacR is considered wild-type (wt) C2 cDNA. Two mutant C2 cDNAs, termed C2-G392A and C2-G954C, were constructed by site-specific mutagenesis (16), using the mutagenic oligonucleotides 5'-GTTGGGGCGATACTGACGCAC-3' and 5'-TGCTGATCACGTCAGTCATAT-3', respectively. Both mutations were verified by nt sequencing.
Ten micrograms of pcDNA3 containing wt or mutant C2 cDNA was transfected into 5 x 105 COS cells using lipofectin (Life Technologies, Gaithersburg, MD). Transfected COS cells were grown in serum-free DMEM (Mediatech, Washington DC) at 37°C for 5 h. The medium was then replaced with fresh DMEM supplemented with 10% heat-inactivated FCS (Irvine Scientific, Santa Ana, CA), 2 mM glutamine, 100 U/ml penicillin, and 100 µg/ml streptomycin, and cell culture was continued at 37°C in 6% CO2. After 48 h, supernatants were collected and stored at -90°C until assayed. The C2 concentration was measured by ELISA, and the hemolytic activity was determined using EAC14 cells prepared as previously described (17).
Pulse-chase biosynthetic labeling and immunoprecipitation
COS cells (3.0 x 107) were transfected by electroporation with 20 µg of the indicated recombinant plasmid. Transfected cells were divided equally into seven 60-mm petri dishes and cultured at 37°C for 72 h. The cells were then washed and incubated in methionine-free DMEM for 10 min. Biosynthetic labeling was performed by incubating the cells in 1 ml of methionine-free DMEM containing 125 µCi/ml [35S]methionine (DuPont-New England Nuclear, Boston, MA) for 15 min at 37°C in 6% CO2. Cells were washed and chased in 1 ml of complete medium (DMEM with 10% heat-inactivated FCS) for 0, 15, 30, 60, 120, 240, and 480 min at 37°C. At each time point, culture supernatant was collected from one culture dish, and the cells were washed with Dulbeccos PBS (Mediatech) twice and lysed in 1 ml of Dulbeccos PBS, pH 7.2, containing 0.5% sodium deoxycholate (Boehringer Mannheim, Indianapolis, IN), 1% SDS, 1% Triton X-100 (Sigma), 10 mM EDTA, 2 mM PMSF (Sigma), and 1 µg/ml each of leupeptin, aprotinin (Boehringer Mannheim), and pepstatin A (Sigma; lysis buffer). Lysates and supernatants were cleared of cellular debris by centrifugation and were stored at -90°C until used. Immunoprecipitation, SDS-PAGE, and autoradiography were conducted exactly as described previously (18). Autoradiographs were scanned by using a Scanjet 3C/T (Hewlett Packard, Wilmington, DE), and the data were analyzed with the National Institutes of Health Image program (version 1.58, Bethesda, MD).
Analysis of the novel MaeII polymorphic restriction site in exon 7
A 241-bp DNA fragment containing exon 7 of the C2 gene was amplified from genomic DNA and digested with MaeII. Resulting fragments were separated on 4% agarose gels and visualized with ethidium bromide. In the absence of the novel polymorphic MaeII site, fragments of 205 and 36 bp were detected, while in its presence the 205-bp fragment was split into 155- and 50-bp fragments.
| Results |
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Figure 1
shows the HLA haplotypes
and serum concentrations of C2 and factor B of all living members of
the probands family. Laboratory normal ranges (mean ± 2 SD) for
serum C2 and factor B are 11 to 35 and 74 to 286 µg/ml, respectively.
As the propositus father was deceased, his HLA haplotypes were
deduced from those of his offspring. The propositus (II.2) and an
asymptomatic female sibling (II.6) inherited haplotype a
from their father (I.1) and haplotype c from their mother
(I.2); both had undetectable serum C2, while their factor B levels were
at the low range of normal. Haplotype a, HLA-A25, B18, DR15,
is identical with that associated with type I C2D (7). The propositus
mother (I.2) and another female sibling (II.1) who had inherited
haplotype c from the mother had low serum C2. All other
siblings had normal C2 and factor B levels. These results indicated
that haplotypes a and c carry C2D alleles, that
heterozygosity for haplotype c, but not a, is
associated with low serum C2, and that compound heterozygosity for C2D
is associated with low normal factor B levels. In contrast to haplotype
a, which is frequently associated with C2D, no such
association has been reported for haplotype c. It thus
seemed likely that haplotype c harbored a novel C2D
allele.
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To confirm that haplotype a carried the type I C2D
allele, genomic DNA from each family member was subjected to PCR using
the oligonucleotide pair designed to amplify exon 6, and its downstream
boundary and the size of the resulting PCR products were assessed by
agarose gel electrophoresis. As shown in Figure 2
, all family members who had inherited
haplotype a from the father (II.2, II.4, II.5, and II.6)
had, in addition to the 174-bp fragment amplified from normal C2
alleles, a 146-bp fragment, which is amplified from alleles carrying
the 28-bp deletion that causes type I C2D.
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Exon-specific PCR/SSCP was used to screen all 18 exons of the
probands C2 gene for possible mutations. DNA from a C2-sufficient
individual was run in parallel as a control. Mobility shifts suggesting
nt sequence alterations were present in exons 3, 7, and 6 of the
proband, the latter apparently caused by the 28-bp deletion of the type
I C2D allele. PCR-amplified exon 3 from the proband and the control
individual were subcloned into the pCR vector. Four independent clones
derived from the proband and three from the control were subjected to
nt sequencing in both orientations. A G to A transition at nt position
392 (numbering from the translational start site) was present in two of
the probands clones, while the other two had the same sequence as the
control clone and the normal gene (12) (Fig. 3
). The G392A mutation results in the
substitution of Tyr for Cys at amino acid residue 111 (C111Y). Thus,
the propositus is heterozygous for a novel C2 mutation, C111Y. To
verify that the C111Y mutation is associated with haplotype
c, PCR-amplified exon 3 from all family members carrying
haplotype c (I.2, II.1, II.2, and II.6) and that from a
control sibling (II.5) without haplotype c were subjected to
automatic nt sequencing. All four individuals carrying haplotype
c had double A and G nt peaks at position 392, indicating
heterozygosity for the G392A mutation. The control sequence had a
single G nt peak at the same position. These data confirm that the
novel C111Y mutation is associated with haplotype c.
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To assess the functional consequences of the C111Y mutation, we
performed pulse-chase biosynthetic labeling experiments using COS cells
transfected with C2-G392A cDNA. Cells were pulsed with
[35S]methionine for 15 min 72 h after
transfection, then chased over an 8-h period. The results of a
representative experiment are shown in Figure 4
. In cells transfected with wt cDNA, C2
protein was detected as a single intracellular band of about 97 kDa.
The bands intensity increased during the first 30 min of chase and
subsequently decreased, with <20% of peak levels detected
intracellularly after 4 h of chase. Substantial secretion started
at 60 min with the appearance of an approximately 99-kDa band in the
extracellular fluid and was essentially complete at the end of the 8-h
chase. In contrast, C111Y C2 was not secreted in detectable amounts in
the extracellular medium, although very faint bands were visible after
exposure of the film for 3 days, indicating minimal secretion. For the
first 30 min of chase, mutant C2 was detected intracellularly as a
single band of a size equal to that of wt C2. The bands intensity
reached peak levels at 30 min of chase and subsequently decreased
slowly, so that after 8 h about 65% of the mutant C2 was still
present intracellularly. An additional band of about 93 kDa appeared
within the intracellular fraction after 60 min of chase, possibly
representing a proteolytic degradation fragment of the mutant
C2.
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Exon 7, which also displayed mobility shifts on PCR/SSCP, was
amplified from the probands genomic DNA and subjected to nt
sequencing. Two of five independent clones isolated from the probands
PCR product carried a G954C transversion (Fig. 5
). The remaining three clones had the
same sequence as clones from a C2-sufficient individual used as a
control. The G954C mutation generates a MaeII restriction
site and causes a Glu for Asp substitution at amino acid residue 298
(E298D). Apparently, the propositus is heterozygous for the mutation.
To investigate whether the G954C mutation is associated with haplotype
a or c, exon 7 of the C2 gene was amplified from
genomic DNA from each member of the probands family. The PCR products
were digested with MaeII, and the digests were analyzed by
agarose gel electrophoresis. As shown in Figure 6
, all living family members carrying HLA
haplotype a (II.2, II.4, II.5, and II.6) also had the
MaeII RFLP, while none of the other family members did.
Therefore, in this kindred the G954C mutation and the resulting
polymorphic MaeII site of exon 7 are associated with
haplotype a and the type I C2D allele. Subsequent studies
have demonstrated that type I C2D alleles from additional unrelated
individuals also carried the MaeII polymorphic site. The
possible functional effects of this mutation were investigated by
constructing the G954C mutant C2 cDNA and testing it in transfection
experiments in comparison with wt C2. Transiently transfected COS cells
secreted about equal amounts of mutant and wt C2. Moreover the specific
hemolytic activity of E298D C2 (4.43 U/ng) was almost identical with
that of wt C2 (4.39 U/ng). Therefore, the E298D mutation is
functionally silent.
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| Discussion |
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Tyr substitution. Cys111 is the
invariable third half-cystine of the second CCP module of C2, and its
substitution with Tyr was shown to be responsible for blocking the
secretion of the C2 polypeptide by COS cells transfected with
mutant cDNA.
The mechanism leading to type II C2D was originally defined using L
cells transfected with two different type II-associated C2Q0 genes from
unrelated individuals (5, 8). One of these was due to a single missense
mutation, C566T, located in exon 5 and resulting in a
Ser189
Phe substitution, while the other was due to a
different missense mutation, G1930A, located in exon 11 and leading to
a Gly444
Arg substitution. These amino acid substitutions
were apparently directly responsible for a marked inhibition of
secretion of the respective mutant C2 proteins, but the molecular
mechanism of inhibition was not investigated further. However, it seems
likely that these two mutations as well as the one described in this
report lead to misfolding of the polypeptide chain, resulting in its
retention in the endoplasmic reticulum (ER) and eventual degradation.
Thus, type II C2D appears to be another example of a growing number of
human diseases caused by protein folding defects (reviewed in 19 .
Classic examples of diseases caused by protein folding defects are
cystic fibrosis and
1-antitrypsin deficiency. In the
most common form of cystic fibrosis, deletion of a single phenylalanine
at residue 508 of the cystic fibrosis transmembrane conductance
regulator causes retention in the ER and inadequate expression of the
protein in the cell membrane (20). A common form of emphysema-related
1-antitrypsin deficiency is the result of a
Glu342
Lys substitution (21), which has been shown to
cause a folding defect apparently responsible for ER retention (22).
Other examples of presumed misfolding leading to deficiency are
missense mutations causing type IIA von Willebrand factor disease (23, 24) and several different missense and nonsense mutations of the A
subunit of factor XIII causing deficiency of the enzyme and bleeding
disorders (25, 26).
A generally accepted model for the folding and processing of membrane-associated and secreted proteins has emerged from studies on the intracellular folding of a small number of proteins (27, 28, 29). Initial cotranslational folding involving secondary and some tertiary structure occurs during translocation of the polypeptide chain into the cisternal space of the ER. Addition and initial processing of N-linked glycans and formation of disulfide bonds occurs next, and native conformation is attained. Proteins are translocated to the Golgi apparatus, further processed, and then are either translocated to the cell surface or secreted (19). ER chaperones, including BiP (30), calnexin (28, 31), and calreticulin (32), play a key role in the process by facilitating protein folding, oligomerization, and translocation (reviewed in 33 . In addition to facilitating folding and maturation of polypeptides, ER molecular chaperones constitute an important component of the ER "quality control" system, which ensures that incompletely or incorrectly folded proteins are retained in the ER until they fold correctly or are degraded (34). Indeed, prolonged association with chaperones constitutes a signal for degradation of aberrant proteins. A number of recent reports have indicated that degradation of misfolded proteins takes place in proteasomes in the cytoplasm (35, 36, 37, 38). In some, but not all, cases, proteasome digestion is preceded by ubiquitination.
We have previously shown that C2
(17), the product of one of several
naturally occurring alternatively spliced C2 transcripts (39), which is
missing the region encoded by exon 17, is not secreted by transfected
COS cells but is retained in the ER, apparently because it is misfolded
(18). We have also demonstrated that both C2
(17) and wt C2 are
associated with calnexin, which seems to be responsible for the ER
retention of the deletional mutant (40). Misfolding and
calnexin-mediated retention in the ER are the likely causes of the
inhibition of secretion of the C111Y mutant described here, although
other chaperones may participate as well. As mentioned,
Cys111 is the third of four invariable half-cystines of the
second of three CCP modules of C2. In native C2, Cys111 is
thought to be disulfide linked to Cys69. CCP modules are
widely distributed and occur in multiple copies in many complement
receptors and regulatory proteins as well as other complement and
noncomplement proteins, such as ß2-glycoprotein I and
clotting factor XIII (41). Solution structures of CCP modules of factor
H (42, 43) and vaccinia virus CCP (44) have shown a common structural
fold that is probably shared by all CCP modules. The framework of a CCP
module consists of a ß sandwich in which ß strands surround a
compact hydrophobic core. The structure is stabilized by a pair of
disulfide bonds between Cys1-Cys3 and
Cys2-Cys4. The present data indicate that at
least the first of these two disulfide bonds is necessary for the
correct folding of the CCP module and/or for maintaining its native
conformation. The structural importance of the CCP module disulfides
was also indicated by the finding that mutation of Cys430
within the seventh CCP module of the b subunit of clotting factor XIII
caused ER retention of the polypeptide and protein deficiency (45).
Similarly, mutations leading to substitution of two different cysteine
residues within CCP modules of the control protein factor H also
resulted in ER retention of the mutant polypeptides and protein
deficiency (46).
Disulfide bonds are important for stabilizing the tertiary structure of secreted proteins. They are also thought to play a significant role in the folding process per se (19). This proposal is based on in vitro studies of the folding of bovine pancreatic trypsin inhibitor (47) and on the intracellular folding of the ß subunit of human chorionic gonadotropin (48, 49). In both cases, it was observed that during folding, transient disulfides form, which are not present in the native protein, but represent important intermediates in the folding pathway. These findings indicate that disulfide rearrangement takes place during maturation of the protein and imply that failure to form certain transient disulfides during folding could result in trapping of the polypeptide at an intermediate stage of the folding pathway. In modular proteins such as C2, individual modules are believed to fold autonomously. Thus, it would be expected that the C111Y mutation would influence only the folding and/or tertiary structure of the second CCP module. However, a more widespread effect on the polypeptide cannot be excluded. Misfolding of C2 also could cause the secretory defect associated with the two previously described mutations, S189F and G444R, that lead to type II C2D (8). Ser189 is within a 30-residue segment that connects the third CCP to the von Willebrand factor type A module of C2 and Gly444 within the 14-residue segment connecting the von Willebrand factor type A module to the serine protease domain (12). It seems more likely that defective overall folding and/or conformation of C2, rather than a conformational defect localized in the connecting segments, is the immediate cause of the ER retention of these two mutants.
The second missense mutation, E298D, revealed by the PCR/SSCP analysis of the probands genomic DNA, was functionally silent, as would be expected from the conservative nature of the amino acid substitution. This mutation is associated with a MaeII polymorphic site of the type I C2D allele of this family. Our preliminary screening data indicate that this polymorphic restriction site is also present in type I C2D of other unrelated kindreds. It therefore provides a simple screening test for type I C2D. Additional testing is necessary to establish the association between the MaeII polymorphic site and other genetic polymorphisms linked to the typical type I C2D allele (50).
| Acknowledgments |
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| Footnotes |
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2 Address correspondence and reprint requests to Dr. John E. Volanakis, Division of Clinical Immunology and Rheumatology, THT 437 University of Alabama, Birmingham, AL 35294-0006. ![]()
3 Abbreviations used in this paper: C2D, deficiency of the second component of complement; SSCP, single-strand conformation polymorphism; nt, nucleotide; wt, wild-type; CCP, complement control protein; ER, endoplasmic reticulum. ![]()
Received for publication February 12, 1998. Accepted for publication March 10, 1998.
| References |
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Phe; Gly444
Arg) cause impaired C2 secretion. J. Biol. Chem. 271:5824.
1-antitrypsin correlates with the liver disease phenotype in homozygous PiZZ
1-antitrypsin deficiency. Proc. Natl. Acad. Sci. USA 91:9014.
1-antitrypsin causes a protein folding defect. Struct. Biol. 2:363.
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