|
|
||||||||


*
Ontario Cancer Institute and Department of Immunology, University of Toronto, Toronto, Ontario, Canada; and
Unité de Génétique et Biochimie du Développement, Unité de Recherche Associée Centre National de la Recherche Scientifique 1960, Département dImmunologie, Institut Pasteur, Paris, France
| Abstract |
|---|
|
|
|---|
| Introduction |
|---|
|
|
|---|
A large body of evidence has accumulated indicating that the preimmune repertoire of Ig receptors is nonrandom in terms of both gene segment usage and characteristics of the DNA junctions (8, 9, 10, 11, 12, 13, 14, 15). Bias in the recombination process and/or cellular selection through Ig receptors are thought to account for the nonrandom nature of the Ig repertoire; however, the details of these selection mechanisms and the relative impact of each type of selection mechanism on the Ig repertoire have not been determined. The Ig H chain repertoire displays two interesting nonrandom characteristics that have been particularly well studied: 1) unequal usage of DH reading frames (RF), and 2) overusage of the VH81x gene segment.
DH elements can be read in three different frames (designated RF1, RF2, and RF3), and in both forward and inverted orientations depending on how they join with the JH element. However, examination of DJH and VDJH rearrangements made in vivo showed that most joins use RF1 in the forward orientation (12, 14, 16). Two nonexclusive hypotheses have been proposed to explain this bias in RF usage. Because DJH rearrangements in RF2 can give rise to expression of truncated µ protein (Dµ; 17 , one hypothesis is that cells making DJH rearrangements in RF2 are counterselected through a Dµ protein-surrogate L chain (SLC)-receptor complex (18, 19, 20, 21). Together with the fact that DJH rearrangements in RF3 frequently encode stop codons, this cellular selection mechanism could explain the predominant usage of RF1 in productive VDJH rearrangements. The second hypothesis suggests that the presence of short sequence homologies in the 3' end of DH elements and the 5' end of JH elements directs the choice of recombination sites such that RF1 predominates (14, 16, 22). Because the influence of sequence homologies on recombination site choice is most readily apparent in the absence of TdT (22), this mechanism might be expected to play a greater role in determining DH RF usage during fetal life, where TdT is absent, than adult life, where TdT is present (23).
The VH segment called VH81x has been shown to be highly overused in B cell precursors, but rarely used in mature B cells. VH81x is used in 2040% of VDJH rearrangements isolated from early B cell precursors, but in only 44.5% of rearrangements from mature, peripheral B cells (10, 24). During adult B cell development, this decline in usage of VH81x is accompanied by a progressive decrease in the ratio of productive to nonproductive VH81xDJH rearrangements (25, 26, 27, 28), suggesting that VH81x-encoded H chains are removed through cellular selection mechanisms. Consistent with this hypothesis, VH81x-encoded H chains often fail to associate with SLC proteins to form the pre-B cell receptor (pre-BCR) (29, 30), which provides signals essential for B cell differentiation (31, 32). Interestingly, this selective disfavoring of productive VH81xDJH rearrangements does not appear to operate during fetal/neonatal B cell differentiation, where a high productive to nonproductive (P/NP) ratio of VH81xDJH rearrangements is still observed in mature B cell populations (27, 33, 34).
Here we report studies designed to assess the impact of TdT synthesis on molecular and cellular selection mechanisms operating during the Ig repertoire development at the endogenous IgH locus. We use TdT-transgenic (tg) mice (35) to determine the effect of enforced TdT synthesis on the neonatal repertoire of VH81xDJH rearrangements. We provide evidence that the presence of N addition in the neonate interferes with both molecular selection processes influencing DH RF usage and cellular selection processes influencing the P/NP ratio of VH81xDJH rearrangements. Our results suggest that TdT has a wider influence in repertoire development than was previously appreciated; moreover, CDR3 seems to play a critical role in determining association with the pre-BCR and in shaping the repertoire.
| Materials and Methods |
|---|
|
|
|---|
TdT-tg mice were generated as described (35) and were maintained by brother-sister mating of heterozygotes at the Ontario Cancer Institute Animal Facility. As the generation of TdT-tg mice proved to be difficult, these data are based on a single TdT-tg line. Individual spleens were harvested at 12 days after birth, and DNA was prepared and typed for the presence or absence of the transgene by PCR, as described (35). Examination of the B lineage populations in neonatal and adult TdT-tg spleens by flow cytometry revealed no significant differences from controls (data not shown). DNA from two tg or three non-tg pups were pooled. We obtained µ membrane exon-targeted (µmT) mice (32) from the laboratory of Dr. Klaus Rajewsky (Institute for Genetics, Cologne, Germany) through Dr. Len Schultz (Jackson Laboratories, Bar Harbor, MN). Timed matings of homozygous µmT mice were conducted and fetal livers were harvested at day 16 of gestation (morning after mating = day 0). DNA was prepared from pooled livers from a single pregnancy. DNA was also prepared from bone marrow cells obtained from an adult (8-wk-old) µmT mouse.
We isolated VDJ gene segments from neonatal spleens of the TdT mice and from fetal livers of the µmT mice although it would have been as informative to keep the perinatal tissue the same. Because of breeding problems we were not able to obtain timed pregnancies for the TdT mice, whereas the µmT mice, which were maintained as a homozygous strain, proved to be relatively simple to obtain. However, because the information extracted from the perinatal µmT VH81x rearrangements depends only on the absence of N addition (determined by using perinatal tissue) and the absence of receptor-mediated selection (determined by the µmT mutation), we were satisfied that the information should not be influenced by which perinatal tissue was used.
Amplification and sequencing of VH81xDJH rearrangements
VH81xDJH rearrangements were amplified from the indicated DNA samples as described (34). Briefly, total VDJH rearrangements were amplified for 30 cycles with a degenerate VH primer (VHall) and a JH4 primer, diluted 1/500 and then reamplified for 25 cycles with a VH81x-specific primer and an internal JH4 primer (JH4IN). The amplified VH81xDJH rearrangements were then cloned using the TA cloning kit (Invitrogen, San Diego, CA), according to the manufacturers protocols. Randomly picked clones were then sequenced using the T7 sequencing kit (Pharmacia, Piscataway, NJ) in conjunction with a sequencing primer specific for the 3' end of VH81x (5'-GACAATACCAAGAAGACC-3').
Sequence analysis
DH elements were identified by comparison to a list of published DH sequences. DH reading frames were classified according to the standard nomenclature (29, 31). Predicted amino acid sequences were determined using the DNA Strider software package (Service de Biochime, Gif-sur-Yvette, France).
| Results |
|---|
|
|
|---|
To determine the effect of transgenic expression of TdT on the
neonatal repertoire, we examined VDJH rearrangements in
TdT-tg and control neonatal spleen. Spleens were harvested from TdT-tg
and non-tg littermates at 12 days after birth, and genomic DNA was
extracted. VDJH rearrangements using the VH81x
gene segment and the JH4 gene segment were amplified from
these DNA samples using PCR. The VH81x gene segment was
chosen for these studies because its genomic sequence is known (10),
allowing the accurate identification of N regions, and because
productively rearranged VH81xDJH alleles
are subject to interesting selection processes (25, 26, 28, 33, 34, 36), which we speculated might be influenced by TdT expression. The
amplified rearrangements were cloned into a plasmid vector, and
randomly selected clones were sequenced (Fig. 1
).
|
|
In VDJH rearrangements isolated from both neonatal and
adult mouse tissues, DH elements are most often found to be
joined to the JH element such that they would be read in
the RF designated RF1 (12, 14, 16). We compared DH RF usage
in VH81xDJH rearrangements isolated from TdT-tg
and non-tg neonatal spleen (Fig. 1
). Rearrangements isolated from
non-tg neonatal spleen show greater than 80% RF1 usage, confirming
previous findings. However, the VH81xDJH4
rearrangements from TdT-tg neonatal spleen show a significantly
different pattern of DH RF usage, with <30% using RF1
(Fig. 1
). This result suggests that the presence of TdT interferes with
the process(es) which establish biased DH RF usage during
neonatal life.
Although the effect on RF usage is apparent among nonproductive
rearrangements (Fig. 1
), it is still possible that TdT is influencing
selection at the level of the Dµ receptor expressed from
DJH rearrangements in RF2 (17, 18, 19, 20, 21). To distinguish
Ig-receptor-independent effects from receptor-dependent effects we
compared DH RF usage in VH81xDJH4
rearrangements isolated from µmT fetal liver or bone marrow cells
(Figs. 2
and
3). These populations provide a sample of
rearrangements generated in the absence or presence of TdT,
respectively, that have not been influenced by Ig-receptor-mediated
selection processes. It was found that >80% of the rearrangements
from µmT fetuses use RF1 (Fig. 3
), suggesting that establishment of
DH RF bias during fetal/neonatal life is not dependent on
receptor-mediated selection processes. In contrast, rearrangements
isolated from µmT bone marrow show a more random pattern of
DH RF usage (Fig. 3
), as shown previously (18). These data
indicate that TdT activity results in the alteration of DH
RF usage by an Ig-receptor-independent mechanism.
|
|
Selection of productive VH81xDJH
rearrangements differs in fetal and adult B cell progenitors in that
fetal cells positively select these rearrangements while adult cells
negatively select these rearrangements (27, 33, 34). Because TdT
represents one gene known to be differentially expressed in fetal and
adult B cell progenitors (23), we hypothesized that TdT may be a
critical factor determining this differential selection of productive
VH81xDJH rearrangements. If this were the case,
we would expect the P/NP of VH81xDJH
rearrangements in TdT-tg neonatal spleen to be different from in non-tg
littermates. Indeed, when we compared the P/NP of
VH81xDJH4 rearrangements in non-tg and TdT-tg
neonatal spleens, a striking difference was found (Fig. 4
). Rearrangements from non-tg neonatal
spleens have a high P/NP (2.4), as observed previously (33, 36).
However, VH81xDJH rearrangements from TdT-tg
neonatal spleens exhibit a significantly lower P/NP (0.32), indicating
a disruption of the positive selection for productive rearrangements.
Thus, synthesis of TdT does appear to be a critical factor in
determining the selection of functional
VH81xDJH rearrangements.
|
Role of the CDR3 sequence in Ig-receptor-dependent selection of productive VH81xDJH rearrangements
The observations on the effect of TdT activity on
receptor-dependent selection of productive
VH81xDJH rearrangements suggest that ability of
VH81x to generate functional receptors is determined by the
CDR3 sequence in such a way that N-less sequences more frequently give
rise to functional receptors. Therefore, we examined the productive
VH81xDJH rearrangements positively selected in
the neonatal spleen to determine whether they exhibit any restrictions
in CDR3 amino acid sequence that could be attributed to
receptor-mediated selection (Fig. 5
). We
observed a clear conservation in the four amino acids immediately
adjacent to the VH81x gene segment (positions 9598 of the
H chain; 37 . All (100%) of the sequences contained a histidine
residue at the first position adjacent to the VH81x segment
(position 95). The amino acids at positions 9698 also show striking
conservation, with hydrophobic amino acids being nearly absent and
glycine, tyrosine, asparagine, and serine comprising approximately 80%
of the amino acids. Notably, positions 96 and 98 consist mainly of
glycine, tyrosine, and serine, while position 97 differs in that 41%
of sequences contains asparagine residues with the remainder mainly
containing tyrosine or serine. By tabulating the most frequent amino
acids at positions 9598, a degenerate consensus sequence can be
derived (Fig. 5
). Over half (58.8%) of the sequences from non-tg
neonatal spleen conform to this consensus sequence (marked with an
asterisk in Figure 5
) with most of the remaining sequences containing
only a single nonconsensus amino acid. As expected, this consensus
sequence is present at a lower frequency (16.7%) in TdT-tg neonatal
spleen (Table II
).
|
|
|
| Discussion |
|---|
|
|
|---|
Regulation of N addition during fetal and adult life
Our study uses mice expressing TdT under the control of the
N-myc promoter and the Eµ enhancer (35), which has been
shown to give high level expression in lymphoid cells throughout their
development (38). However, the overall level of N addition in the TdT
tg neonatal spleen (Table I
) and TdT-tg fetal liver (35) is
significantly less than observed in normal adult spleen.
Receptor-mediated selection against N-region-containing sequences
cannot account for this difference because it is apparent among both
productive and nonproductive rearrangements (Fig. 1
). Thus, this lower
level on N addition appears to result from lower TdT activity. It
remains to be determined whether this is simply due to lower expression
of TdT in the tg B cell progenitors or to differential
posttranscriptional regulation of TdT activity in fetal vs adult B cell
progenitors.
During fetal B cell development, DH RF bias is established through a receptor-independent TdT-sensitive mechanism
During B cell development in the adult bone marrow, it has been
shown that DH RF bias, and specifically suppression of RF2,
is dependent on signaling through the Dµ protein/SLC complex
(18, 19, 20, 21). In contrast, our data indicates that, during fetal B cell
development, DH RF bias is established independently of
expression of µ-related proteins on the cell surface. Instead, it
appears that during the fetal/neonatal period DH RF bias is
established at the level of V(D)J recombination by a mechanism that
requires the absence of TdT. These results provide supporting evidence
for the homology-directed joining model as the mechanism determining
biased RF usage during fetal/neonatal life (14, 16, 22).
Homology-directed joining has been shown to be essential for the
establishment of "canonical" junctional sequences in the invariant
/
TCR generated during fetal life, and generation of such
receptors is largely abrogated in the presence of TdT (39). Thus,
DH RF bias appears to be a second clear example of the
influence of homology-directed recombination in generation of the
restricted fetal repertoire. Given the existence of the
Dµ-receptor-dependent mechanism for maintaining biased RF usage, it
is surprising that this mechanism does not appear to maintain biased RF
usage when homology-directed joining is disrupted in TdT-tg neonates.
This could indicate that the Dµ-receptor-dependent mechanism is only
operative during adult B cell differentiation; however, additional
experiments will be required to clarify this issue. To determine
whether the finding that premature TdT expression interferes with
normal neonatal DH RF bias may be generalizable to
other VH genes, we reexamined our data of TdT-tg fetal
liver sequences reported in (35). Of 16 informative
VHJ558DJH sequences, eight had N additions, and
eight did not. Of those without N, seven are in RF1 (88%); of those
with N, three are in RF1 (38%). Thus, it may be a general finding that
N addition changes the bias for RF1 usage.
Ig-receptor-dependent positive selection of VH81x-encoded H chains is dependent on the CDR3 sequences
Several studies have indicated a striking difference in positive selection of VH81x-encoded H chains by fetal and adult B cell progenitors (25, 27, 34). We previously put forward two hypotheses to explain this difference (34): 1) fetal and adult B cell progenitors have different requirements for Ig-receptor-mediated selection, or 2) selection of VH81x-encoded H chains is dependent on the VH-DH-JH junctional sequence (CDR3 region) in such a way that the absence of N addition during fetal life (23) more frequently generates VH81x-encoded H chains which have the structure required for positive selection of B cell progenitors. A recent study (40) using an in vitro assay to assess the impact of various transgenic H chains on fetal vs adult B cell development drew the conclusion that fetal and adult B cell precursors differ in their H chain selection requirements, consistent with the first hypothesis. However, the present data provide strong in vivo evidence in support of the second hypothesis, showing that positive selection of VH81x-encoded H chains during fetal life is virtually abrogated by transgenic expression of TdT. And, as discussed above, homology directed joining is likely to be the mechanism responsible for those CDR3 regions that are productive. Thus, in the case of VH81x, it appears that the fetal vs adult difference in TdT synthesis is sufficient to determine the fetal vs adult difference in selection of H chains.
Recent studies examining the ability of various µ H chains to form a pre-BCR complex (29, 30, 41) provide a probable mechanism for the CDR3-dependent positive selection of cells bearing VH81x-encoded H chains. The initial repertoire of H chains generated in the bone marrow was found to contain both H chains capable of forming a pre-BCR complex and H chains incapable of forming this complex, in approximately equal proportions (29). However, the large majority of H chains isolated from later stages of pre-B cell development are capable of forming a pre-BCR, indicative of a positive selection based on pre-BCR formation (29). Several VH81x-encoded H chains were tested for the ability to form a pre-BCR complex, and it was found that all N-region-containing VH81x-encoded H chains tested fail to form a complex with SLC (29, 30). To date, the only two VH81x-encoded H chains (42) found to form a pre-BCR complex are N-less joins isolated from fetal cells. Importantly, a transgene encoding a VH81x H chain that has no N addition and that can form a pre-BCR (H.-M. Jack, unpublished observation) was shown to support B cell maturation (42), while a transgene encoding a VH81x H chain that cannot form a pre-BCR failed to support B cell differentiation (30, 41). Thus, it appears plausible that the differential positive selection of VH81x-encoded H chains with simple vs complex CDR3 regions is due to differential association with SLC.
Implications for pre-BCR formation and selection of the neonatal Ig repertoire
Interestingly, the capacity of different VH81x-encoded H chains to bind SLC appears to correlate with the ability to bind conventional Ig L chains (41). This indicates that pre-BCR formation may serve as a broad screen for "functionality" of H chains in terms of their ability to fold correctly to form Ig-like receptors (30, 41). In light of this view, it is interesting that the "functionality" of H chains encoded by VH81x appears to be extremely sensitive to variations in the CDR3 region. We speculate that H chain proteins encoded by VH81x may be inherently unstable and only form a "functional" Ig fold when joined to sequences encoded by simple, conserved DJH joins that stabilize the Ig domain. This instability could be due to one or more of the unusual amino acid substitutions found in VH81x (10). Thus, the VH81x segment may be structurally specialized for selective expression in the TdT-negative repertoire generated early in life. It remains to be determined whether other such structurally specialized VH segments exist in the mouse or human.
| Acknowledgments |
|---|
| Footnotes |
|---|
2 Address correspondence and reprints requests to Dr. Gillian E. Wu, Ontario Cancer Institute, 610 University Ave., Room 8113, Toronto, Ontario, Canada. E-mail address: ![]()
3 Abbreviations used in this paper: TdT, terminal deoxynucleotidyl transferase; H, heavy; L, light; SLC, surrogate L chain; N, nontemplated; P, palindromic; RF, reading frame; tg, transgenic; pre-BCR, pre-B cell receptor; P/NP, productive to nonproductive ratio; µmT, µ membrane exon-targeted. ![]()
Received for publication April 12, 1998. Accepted for publication August 11, 1998.
| References |
|---|
|
|
|---|
-Igß. J. Exp. Med. 184:2079.
5 protein in B cell development. Cell 69:823.[Medline]

antigen receptor repertoire in the fetal thymus. Immunity 3:439.[Medline]

genes: Implications for 
T cell lineages and for a novel intermediate of V-(D)-J joining. Cell 59:859.[Medline]
This article has been cited by other articles:
![]() |
B. Gozalbo-Lopez, P. Andrade, G. Terrados, B. de Andres, N. Serrano, I. Cortegano, B. Palacios, A. Bernad, L. Blanco, M. A. R. Marcos, et al. A Role for DNA Polymerase {micro} in the Emerging DJH Rearrangements of the Postgastrulation Mouse Embryo Mol. Cell. Biol., March 1, 2009; 29(5): 1266 - 1275. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Kawano, S. Yoshikawa, Y. Minegishi, and H. Karasuyama Selection of stereotyped VH81X-{micro}H chains via pre-B cell receptor early in ontogeny and their conservation in adults by marginal zone B cells Int. Immunol., July 1, 2005; 17(7): 857 - 867. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. A. Martin, H. Bradl, T. J. Collins, E. Roth, H.-M. Jack, and G. E. Wu Selection of Ig {micro} Heavy Chains by Complementarity-Determining Region 3 Length and Amino Acid Composition J. Immunol., November 1, 2003; 171(9): 4663 - 4671. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. A. Hayden, P. Riegert, and G. H. Kline Detection of Functional VH81X Heavy Chains in Adult Mice with an Assessment of Complementarity-Determining Region 3 Diversity and Capacity to Form Pre-B Cell Receptor J. Immunol., August 15, 2002; 169(4): 1970 - 1977. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Wei, R. Zeff, and I. Goldschneider Murine Pro-B Cells Require IL-7 and Its Receptor Complex to Up-Regulate IL-7R{alpha}, Terminal Deoxynucleotidyltransferase, and c{micro} Expression J. Immunol., February 15, 2000; 164(4): 1961 - 1970. [Abstract] [Full Text] [PDF] |
||||
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |