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The Journal of Immunology, 1998, 161: 5862-5872.
Copyright © 1998 by The American Association of Immunologists

Extrathymic T Cell Differentiation in the Human Intestine Early in Life

Duncan Howie1,*, Jo Spencer{ddagger}, Denise DeLord§, Costantino Pitzalis§, Neville C. Wathen{dagger}, Ahmet Dogan, Arne Akbar|| and Thomas T. MacDonald2,*

* Departments of Paediatric Gastroenterology and {dagger} Obstetrics and Gynaecology, St. Bartholomew’s and the Royal London School of Medicine and Dentistry, London, United Kingdom; Departments of {ddagger} Histopathology, and § Rheumatology, Guy’s, King’s College and St. Thomas’ Hospital, Medical and Dental School, London, United Kingdom; Department of Histopathology, University College London, London, United Kingdom; and || Department of Clinical Immunology, Royal Free School of Medicine, London, United Kingdom


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
It is clear from experimental studies in mice that T cell maturation can occur outside the thymus, especially in the intestine. There is little sound evidence so far that extrathymic T cell maturation occurs to any significant extent in human gut, and, postnatally, there is abundant evidence that the gut mucosa is an immune effector organ. Here, we describe a large population of T lymphocytes in human fetal intestinal mucosa that are proliferating (Ki67+) in the absence of foreign Ag (CD3+, Ki67+ lamina propria lymphocytes (LPL) 22 ± 1.8% and CD3+, Ki67+ intraepithelial lymphocytes (IEL) 9.1 ± 1.4%), that express the T cell activation markers CD103, HLA-DR, and L-selectinlow, and that express mRNA transcripts for pre-TCR-{alpha}. There is also a substantial proportion of CD7+ LPLs that do not express CD3 (CD3-7+, 14 ± 7% of all LPLs) in the fetal gut that may be differentiating into CD3+ cells. Rearranged TCR-ß transcripts of fetal LPLs, IELs, and paired blood lymphocytes were cloned and sequenced, and virtually no overlap of clonality was observed between blood and intestine, suggesting that gut T cells may not be derived from the blood. In addition, 30 days after engraftment of SCID mice with fetal intestine, CD3-7+ cells, proliferating T cells, and pre-TCR-{alpha} transcripts were abundant, and there is a threefold increase in CD3+ IELs. These data show that in the human intestine before birth a population of precursor T cells exists that may be differentiating into mature T cells in situ


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
The intestine is a unique immunologic compartment in that it contains the largest pool of T cells in the body, and these cells are in close contact with the Ags of foods and the enteric microflora. Given the fact that intestinal T cells respond to Ag in the Peyer’s patches and recirculate to the lamina propria via the thoracic duct lymph and blood, intestinal T cells have traditionally been thought to play an effector role in mucosal immunity. However, in the past 10 years numerous animal studies have borne out the predictions made by Fichtelius in the 1960s and have shown that most intraepithelial lymphocyte (IEL)3 subsets can develop via an extrathymic pathway (1). In these studies, a variety of systems of transferring pluripotent stem cells into either congenitally or surgically athymic mice have been used and show clearly that the intestine can drive the development of IELs in the absence of a thymus (2). Extrathymic maturation of IELs has been shown to occur in at least four different experimental systems in the mouse. Congenitally athymic (nude) mice have around 20% of the {gamma}{delta} TCR+ IELs found in normal euthymic mice but have few TCR-{alpha}ß+ IELs, the relative proportions of {alpha}ß and {gamma}{delta} IELs varying with the age of the mice (3, 4, 5). Thymectomized and reconstituted mice (ATXBM, ATXFL), which are reconstituted with either adult bone marrow or day 12 fetal liver, can generate {gamma}{delta} and TCR-{alpha}ß+ IELs at about 40% of normal levels with a lag period of around 6 mo following bone marrow or fetal liver transfer (6). These chimeric animals have no T cells in their lymph nodes or Peyer’s patches. Neonatally thymectomized mice contain CD8{alpha}{alpha} TCRlow cells in their intestinal epithelium, which are thought to represent intermediate stages in T cell development (7). Thymectomized RAG-/- mice reconstituted with bone marrow from nude mice generate TCR-{alpha}ß and {gamma}{delta} IELs that exclusively express the CD8{alpha}{alpha} homodimer (8).

Evidence for a similar function for the human intestine is scarce. mRNA transcripts for RAG-1 and RAG-2 have been detected in human IEL but not lamina propria lymphocytes (LPLs) (9). Terminal deoxynucleotidyltransferase (TdT) is undetectable in adult human IEL (10), thus any role for RAG-1 and RAG-2 in the formation of the adult gut IEL repertoire must be quite small because it has been reported that for adult IEL, TCR ß-chain mRNAs contain numerous N additions (11, 12).

Human fetal intestinal mucosa contains T cells in the lamina propria and epithelium from 12–14 wk gestation (13). Although both mice and humans have intestinal IEL from early in ontogeny, there are fundamental species differences between them. In mice, {gamma}{delta}+ IELs predominate in young animals (<8 wk) after which both {gamma}{delta} and {alpha}ß IEL numbers increase; however, {gamma}{delta} IELs still predominate (40–80% of CD8+ IELs (14)). In humans, {gamma}{delta}+ IELs are a relatively small population accounting for only ~10% of total IEL numbers throughout life (15, 16, 17); the remaining IELs use the TCR-{alpha}ß. Also in humans, there is no evidence that the {gamma}{delta} IEL population is thymus-independent. {gamma}{delta}+ IEL numbers only increase in humans during coeliac disease (18).

It is difficult to reconcile the presence of numerous T cells in the human fetal intestine with the concept of the human gut mucosa being an immune effector organ if T cells are present when the exposure to gut Ags is minimal. An alternative theory could be that T cells in the human fetal gut develop locally from immature precursors.

A recent study has demonstrated the existence of TCR-ß rearrangements in fetal IELs at 14 wk gestation in the absence of TCR-{alpha} rearrangement (19). This study also showed that "T early {alpha}" was abundantly expressed in early gestation fetuses along with a new tentatively described "T early ß" mRNA with unknown function. These data provide evidence that TCR rearrangement is ongoing in the fetal intestine from an early stage, but do not address the issue of whether the cells are differentiating into T cells locally or are immature thymic emigrants that home to the gut.

In this study, we have used immunohistochemistry, analysis of pre-TCR-{alpha} (pT{alpha}) and TCR Vß gene expression, and transfer of fetal human intestine into SCID mice to provide compelling evidence that T cells that are found in human fetal gut are markedly different from those seen in the postnatal intestine and most probably arise from the CD3-7+ cells abundant in the fetal gut.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Tissues

This study received ethical committee approval from the City and East London Health Authority. Human fetal intestine was obtained from the Medical Research Council Tissue Bank, Hammersmith Hospital London, or from the Homerton Hospital, London. Fetal blood was obtained by cordocentesis at the Homerton Hospital, London. All specimens were between 12 and 27 wk gestation as assessed by crown/rump measurements. Tissue was snap frozen in liquid nitrogen for immunohistochemistry and dissected into 1- to 2-mm2 fragments for organ culture or 1-cm segments for transplantation into SCID mice. Jejunal biopsies were obtained from nine infants aged 3 mo to 6 yr attending Queen Elizabeth Hospital Hackney. These children had chronic diarrhea of 2-wk duration, but the biopsies were histologically normal.

Mice

SCID (BALB/c) mice (20) were kept in specific pathogen-free conditions at St. Thomas’ Hospital, London. Mice were transplanted with 1-cm segments of fetal intestine at 6 wk of age as described elsewhere for rheumatoid synovium (21). Animals were killed 4 wk later and the transplanted fetal intestine was then snap-frozen for histology and RT-PCR analysis.

Immunohistochemistry and immunofluorescence

CD3-7+, CD3+4-8- and CD3+, Ki67+ cells were detected by sequential double immunocytochemistry (22) using a peroxidase-conjugated secondary and diaminobenzidine with the first Ab to give a brown reaction product and an alkaline phosphatase-conjugated Ab and fast blue with the second mAb to give a blue reaction product. Dual immunofluorescence staining was used to detect CD3 cells expressing CD4, CD45RO, or HLA-DR using a rhodamine-conjugated secondary Ab to detect CD4, CD45RO, or HLA-DR immunoreactivity followed by a biotinylated anti-CD3 Ab and streptavidin-conjugated FITC to detect CD3+ T cells. T cells staining green and cells expressing CD4, CD45RO, and HLA-DR staining red were detected using the green and red fluorescence filters of a Leitz Diaplan microscope with a fluorescent light source (Leitz, Wetzlar, Germany). CD103+ and CD62L+ T cells were enumerated using single immunoperoxidase staining. Abs were UCHT-1 (CD3; Dako, High Wycombe, U.K.), UCHL-1 (CD45RO; Dako), CR3–43 (HLA-DR; Dako), Leu-3a (CD4; Becton Dickinson, Oxford, U.K.), Leu-8 (CD62-L; Becton Dickinson), RFT-8 (CD8; Royal Free Hospital, London, U.K.), SN-130 (CD45-RA; Royal Free Hospital), HML-1 ({alpha}Eß7; Dako), biotinylated anti-CD3 (Serotec; Oxford, U.K.), streptavidin-FITC (Serotec), horseradish peroxidase rabbit anti-mouse IgG (Dako), alkaline phosphatase rabbit anti-mouse IgG (Dako), and rhodamine conjugated rabbit anti-mouse IgG (Dako). For all immunocytochemistry experiments, negative controls were included using secondary Abs alone or irrelevant isotype controls. Apoptotic T cells were identified by staining sections with anti-CD3 followed by FITC-conjugated rabbit anti- mouse IgG. Sections were then fixed in 10% formal saline for 10 min and washed in TBS for 10 min. They were then incubated with 0.01% propidium iodide (Sigma, Poole, U.K.) in Tris-buffered saline (TBS) for 3 min, washed in TBS, and mounted.

Image analysis

For quantification of T cell subset density by immunocytochemistry, areas of lamina propria were mapped and measured using a computer-controlled cursor with a Seescan image analysis package (Seescan, Cambridge, U.K.). In this manner, T cell numbers in the lamina propria were calculated per square millimeter. Similarly, the length of epithelium was measured using a calibrated mouse-controlled cursor, and IEL numbers calculated per millimeter of epithelium.

RT-PCR and Southern hybridization

Total RNA was extracted from tissues using TRIzol (Life Technologies, Paisley, U.K.) according to the manufacturers instructions. In some cases, before reverse transcription the RNA was treated with 3 U DNase-I (Promega, London, U.K.) for 30 min at 37°C (pT{alpha}, Cß, and C{alpha}) and PCR reactions performed with RNA alone to control for the possibility of contaminating DNA in the RNA preparations. RNA was reverse transcribed using 100 U of Moloney murine leukemia virus reverse transcriptase (M-MLV RT, Life Technologies) in a 20-µL reaction containing 50 mM Tris-HCl, 75 mM KCl, 3 mM MgCl2, 3 mM DTT, 500 µM each 2'-deoxynucleoside 5'-triphosphate (dNTP), and 100 ng oligo thymidine 5'-triphosphate (dTTP).

PCR for TCR Vß family members was performed as described elsewhere (11). Southern hybridization for TCR Vß families was performed after 35 PCR cycles, which was previously assessed to be in the linear phase of amplification. Primers for TCR Cß were sense 5'-GTCCACTCGTCATTCTCCG-3' and anti-sense 5'-GGCTCAAACACAGCGACCT-3', C{alpha} sense 5'-CCAGAACCCTGACCCTGCCGTG-3' and anti-sense 5'TATGGATCCCAGGGAGCACAGGCTGTCTT-3', and pT{alpha} sense 5'-GGCACACCCTTTCCTTCTCTG-3' and anti-sense 5'-GCAGGTCCTGGCTGTAGAAGC-3'. For Cß, C{alpha}, and pT{alpha}, PCR was performed with a hot start of 94°C for 2 min followed by annealing at 56°C for 10 min, followed by 35 cycles of 94°C for 30 s, annealing at 56°C for 30 s, and extension at 72°C for 1 min. PCR products were run on 1% agarose gels, transferred to nylon membrane (Magna, Sartorius, Epsom, U.K.) using standard techniques and hybridized to 32P end-labeled (>109 cpm/µg) internal oligonucleotide probes. Internal probes used were TCR Cß 5'-GCCTTTTCCCTGTGGGAGAT-3', C{alpha} 3'-ACTGTGCTAGACATGAGGTCTA-3' and pT{alpha} 5'-CAATGGCAGTGCACTGGATGCC-3'. Hybridization was conducted in 6x SSC with 0.5% SDS at 66°C overnight followed by a 5-min wash at 58°C in 6x SSC and a 5-min wash in 2x SSC 0.5% SDS at 58°C. Filters were then exposed to x-ray film overnight at -70°C. Negative control PCR products were included in all hybridizations to control for probe specificity. In addition, to confirm the identity of the amplified pT{alpha} RT-PCR products these were purified over Wizard PCR-Prep columns (Promega) and digested with Alu-I (Promega), which gave characteristic 110-bp and 226-bp fragments on agarose gel electrophoresis. Purified pT{alpha} PCR products were also cloned and sequenced to confirm their identity.

Cloning and sequencing of TCR Vß PCR products

TCR RT-PCR products were ligated into the pMOSBlue T vector using the pMOSblue T vector kit (Amersham, Buckingham, U.K.) according to the manufacturers instructions and cloned into MOSblue competent Escherichia coli. Individual recombinant colonies were PCR screened using T7 and universal primers flanking the multiple cloning site. Clones were chosen for sequencing based on PCR product size, the TCR PCR product with short 5' and 3' plasmid flanking sequences being around 370 bp.

PCR products of the recombinant colonies were directly sequenced using the dideoxy chain termination method using T7 Sequenase (Amersham) in the forward and reverse direction. Sequencing reactions were run on a Sequigen II manual sequencing apparatus (Bio-Rad, Hertfordshire, U.K.).


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Human fetal intestine contains large numbers of dividing T cells with an activated phenotype

IEL Immunohistochemical staining of cryostat sections from human fetal intestine aged 12–27 wk gestation reveals the abundance of CD3+ cells in fetal gut, both in the lamina propria and epithelium. This is despite the lack of lumenal stimulation from enteric Ags (Figs. 1Go and 2a). IEL density increases steadily with age up to the oldest specimen examined, where there was around two-thirds of the number seen in postnatal specimens (27 wk gestation; Fig. 1Go). The Ab TCR-{delta}1 stains around 30% of epithelial T cells, showing the majority to be TCR-{alpha}ß+ (data not shown and 15 . CD3-7+ cells, the phenotype of marrow-derived pre-T cells, are rare in the fetal epithelium (0.6 ± 0.3% of total CD7+ cells) (23). Dual staining with CD2 and CD7 on cryostat sections also reveals many CD2-7+ IELs (15.5 ± 2.6% of CD7+ IELs are CD2-; Fig. 3GoA). Significantly, ~50% of fetal IELs are CD8+, the remainder being subset negative (CD3+4-8-). The majority of fetal IELs are CD45RO+ (63 ± 36%), the phenotype of memory cells. Virtually no fetal IELs are CD62L+ and 100% express HML-1 ({alpha}Eß7 integrin). Interestingly, ~10% of fetal IELs are in cell cycle (9.1 ± 1.4%) as revealed by double staining with Ki67. IELs of all subsets analyzed are dividing (Fig. 3GoB). This is in marked contrast to healthy adult gut, which contains virtually no dividing T cells in the epithelium or lamina propria in vivo (24). Because the rate of proliferation seen for IEL in normal fetal intestine is exceptionally high compared with the relatively slow increase in IEL number seen during gestation, the cells must either die or leave the intestine. The former is likely to be the case because CD3+ IELs with fragmented apoptotic nuclei can be seen and these account for up to 5% of all IEL (4.5 ± 2.1%).



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FIGURE 1. CD3+ LPL and IEL density in fetal intestine with increasing gestational age in weeks and postnatal (PN) intestine. Bars represent the mean ± 1 SE.

 


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FIGURE 3. Phenotypic analysis of fetal intestinal T cells. A, T cell subsets and activation markers. B, T cells undergoing division assessed by T cell subset.

 
LPL Fetal intestine aged 12–27 wk gestation contains numerous CD3+ LPLs (Fig. 1Go). The density of LPLs increases steadily during gestation from 12 wk up to around 18 wk where their number is approximately one third of that seen in postnatal specimens (Fig. 1Go). This is in contrast to IEL, which increase in number steadily up to 27 wk of gestation. T cell density in fetal gut lamina propria is variable within a single specimen, and there are many accumulations of large blast-like CD3+ cells in the villi (Fig. 2Goc), quite different from the organized T cell zones of the Peyer’s patches. The Ab TCR-{delta}1 only stains 5% of lamina propria T cells, indicating that the large majority of fetal LPLs are TCR-{alpha}ß+ (data not shown and 15 .



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FIGURE 2. Immunohistochemical and immunofluorescent analysis of frozen sections of human fetal intestine. a, Double immunocytochemistry of CD3 (brown) and CD7 (blue); numerous CD7+3- (blue) cells can be seen (arrowheads); magnification, x200. The inset (x400) shows a CD3+ brown cell next to a CD3-7+ blue cell. b, Double immunocytochemistry of CD3 and CD7 showing cells with strong membrane CD3 (open arrowhead), membrane CD7 with cytoplasmic CD3 (closed arrowhead), and weak cytoplasmic and membrane CD3 (double arrows); magnification, x400. c, Immunocytochemistry for CD3 showing blast-like morphology of many CD3+ cells in the fetal lamina propria; magnification, x200. d, Double immunocytochemistry for CD8 (brown) and CD25 (blue) showing CD8- CD25+ cells in the lamina propria (closed arrow heads) [double immunocytochemistry of CD4 or CD3 (brown) with CD25 (blue) resulted in no blue cells being seen, therefore the CD25+ cells are CD3+4+]; magnification, x200. e, Double immunocytochemistry for Ki67 (brown) and CD3 (blue) showing LPL and IEL undergoing cell division; magnification x400. f, Double immunofluorescence for propidium iodide (total cellular DNA; in orange) and CD3 (green); large arrow head shows a CD3+ cell with characteristic pyknotic apoptotic nucleus; magnification, x400.

 
There are also many CD3-7+ cells in fetal gut lamina propria (14 ± 7% of CD7+ LPLs are CD3-; Fig. 2Goa, insert) in specimens of all ages in contrast to the epithelium. These cells are very rare in Peyer’s patches (<0.01%, data not shown), and in postnatal gut are only occasionally seen in the epithelium at the tips of the villi (23). Dual staining with CD2 and CD7 also reveals many LPLs to be CD2-7+ (25 ± 3.4% of CD7+ LPLs are CD2-; Fig. 3GoA).

There are also many cells with weak cytoplasmic CD3 staining, quite unlike the dense membrane staining seen in mature T cells (Fig. 2Gob), and, more rarely, it is possible to see LPLs with membrane CD7 and cytoplasmic CD3 (Fig. 2Gob). CD4+ T cells outnumber CD8+ cells in the lamina propria of all specimens, regardless of gestational age (Fig. 3GoA). However, there is a large population of CD3+4-8- LPLs in all specimens (30 ± 7.3% of CD3+ LPLs are CD4-8-). The majority of fetal LPLs bear activation markers, a few are CD25+ (Fig. 2God), and the majority are CD45RO+ (65 ± 2.8%). There is also expression of CD103 (HML-1, {alpha}Eß7 integrin, 36 ± 2.8% of CD3+ LPLs), HLA-DR (26 ± 4.1%), and virtually no LPL are L-selectin positive.

In addition to IEL, LPL are also actively dividing as revealed by Ki67 staining (Fig. 2Goe). The number of dividing LPL is greater than IEL (22 ± 1.8% LPL, cf 9.1 ± 1.4% IEL). LPLs of all subsets are dividing (Fig. 3GoB). Fetal LPL with apoptotic nuclei are also visible in specimens of all gestational ages examined with 8 ± 1.8% of CD3+ LPL having apoptotic nuclei (Fig. 2Gof).

Fetal LPL, IEL, and blood lymphocyte TCR-ß repertoires are diverse and separate

Analysis of the expressed TCR Vß usage by fetal LPL, IEL, and matched blood populations by semiquantitative RT-PCR and Southern hybridization reveals a diverse repertoire of Vß expression with most of the Vß families analyzed being represented (Figs. 4Go and 5). Two representative 15 wk gestation specimens of four analyzed are shown. The relative contribution to the TCR repertoire by individual Vß family members varies between the three sites in individual specimens. In addition, RT-PCR and Southern hybridization analysis was performed on IEL and LPL derived from distal segments of the same gut samples as shown in Figs. 4Go and 5Go, and very similar patterns of TCR Vß expression were observed (data not shown). The polyclonal nature of the IEL population shown here by RT-PCR confirms our earlier studies based on immunohistochemical analysis of fetal intestine (25). These data contrast with analyses of postnatal IEL that are markedly oligoclonal (11, 12). If CD3+ T cells in the fetal intestine are derived from blood, it should be possible to observe overlap in the CDR3 usage between blood and intestinal T cells; however, we have found that this is not the case. We performed random cloning and sequencing of TCR CDR3 regions from the PCR products of the Southern analysis (samples 1 and 2). Vß families were chosen for sequencing based upon their relative expression in the Southern analyses. Families that had either relatively high expression in blood compared with IEL/LPL (BV5, sample 1) or high expression in blood and IEL compared with LPL (BV18, sample 1) or equal expression between the three sites (BV12 and BV17, sample 2, data not shown) were chosen for sequencing. This was done to control for the varying amount of TCR mRNA between the three sites, which could have an effect on the number of identical clones isolated. The results of this analysis are shown in Tables I and II. Sequences isolated from blood, LPL, and IEL were unique, indicating that the IEL and LPL populations had been isolated successfully. Table IGo shows the results of CDR3 sequencing of BV18 from sample 1. Of 63 recombined BV18 sequences, only one sequence was isolated more than once, two from PBLs and two from IELs; the remaining 61 sequences were unique. The majority of isolated sequences were productively rearranged and in frame as shown in Table IGo and II. Similarly, TCR BV5 transcripts isolated from sample 1 were diverse, with one clone isolated once from LPL and IEL but not blood. N-region diversity was extensive in blood, IEL, and LPL, indicating that TdT activity is present at 15 wk gestation in the human fetus. It is also noteworthy that there was a biased usage of Dß1. (Dß2.1 was only isolated from 32/240 clones). Thus, there is very little overlap in clonality between blood and intestinal T cells in the fetus, suggesting that these populations may arise separately.



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FIGURE 4. RT-PCR/Southern analysis of TCR Vß family expression by human fetal LPL, IEL, and matched blood T cells in a sample of 15 wk gestation (sample 1). Percent expression was calculated by dividing individual Vß band intensity by total band intensity for each sample (LPL, IEL, and blood).

 


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FIGURE 5. RT-PCR/Southern analysis of TCR Vß family expression by human fetal LPL, IEL, and matched blood T cells in a sample of 15 wk gestation (sample 2). Percent expression was calculated by dividing individual Vß band intensity by total band intensity for each sample (LPL, IEL, and blood).

 

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Table I. CDR3 analysis of TCR Vß RT-PCR products from fetal intestinal LPL, IEL, and matched blood lymphocytes

 
pT{alpha} transcripts are abundant in both fetal lamina propria and epithelium, and fetal intestine transplanted into SCID mice contains proliferating T cells and immature T cell subsets

RT-PCR analysis reveals that mRNA transcripts for pT{alpha} are detectable in fetal lamina propria and epithelium (Fig. 6GoA). The PCR products for pT{alpha} were cloned and sequenced to confirm their identity in addition to Southern hybridization. To answer the question of whether the pT{alpha} mRNA is from cells that are blood-derived thymic emigrants or represents a T cell progenitor population maturing in situ, we transplanted segments of fetal intestine into SCID mice and analyzed the T cell subpopulations before and after transplantation. It would be expected that if the cells containing the pT{alpha} message were recent thymic emigrants, then after 30 days in a SCID mouse any pT{alpha}-expressing cells would have arisen locally because, in the thymus at least, these cells are short-lived (26). Fig. 6GoB shows that after 30 days engraftment into SCID mice pT{alpha} transcripts were still detectable, suggesting the presence of a pool of T cell precursors in the fetal gut. Phenotypic analysis of lymphocytes in the transplants before and after transplantation shows that after engraftment there are still abundant CD3+4-8- cells in the epithelium and lamina propria (Fig. 7Go). In addition, the CD3+ T cells present after engraftment continue to divide (Fig. 7Go), and cells with a T cell precursor phenotype, CD3-7+, are still present in the lamina propria (Table IIIGo). The most startling observation in these experiments is that following transplantation the density of IELs increased approximately threefold (Fig. 8Go and Table IVGo); these IELs are mostly TCR-{alpha}ß+ (Fig. 7Go) because the proportion of TCR-{gamma}{delta}+ IELs decreases during the 30 day engraftment period.



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FIGURE 6. RT-PCR/Southern analysis of pT{alpha} mRNA in fetal intestine before and after transplantation into SCID mice. A, C{alpha}, Cß, and pT{alpha} expression in day 0 fetal intestine (15 wk gestation) and fetal thymus (positive control). B, Cß and pT{alpha} expression on day 0, and proximal fetal intestine (15 wk gestational age) transplanted into SCID mice 30 days following engraftment. (pT{alpha} NoRT, RNA alone used for PCR reaction; results of two experiments shown.)

 


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FIGURE 7. Phenotype of CD3+ LPLs and IELs in fetal intestine before and after transplantation into SCID mice. Day 0 bars represent the average of two experiments. Day 30 transplant (TX) bars represent the mean of 10 different transplants ± 1 SE.

 

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Table III. CD3-7+ IEL and LPL populations in day 0 and SCID-transplanted human fetal intestine

 


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FIGURE 8. Immunohistochemistry of CD3 on frozen sections of fetal intestine (A) on day 0 before transplantation into SCID recipient and (B) after 30 days engraftment into SCID recipient. Note increase in CD3+ IELs.

 

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Table IV. CD3+ IEL and LPL populations in day 0 and SCID-transplanted human fetal intestine

 

    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
In this report, we describe a population of early T lineage cells in the human fetal intestine that display features associated with local differentiation. There is a large population of CD3-7+ T lymphocyte progenitors in the lamina propria. CD3+ cells at this site express markers of activation, are actively proliferating in the absence of food or Ags of the microflora, and undergo programmed cell death. Rearranged TCR ß-chains are detectable at the mRNA level at 15 wk gestation, and analysis of the CDR3 variability between IEL, LPL, and PBL of the fetuses we examined shows virtually no overlap in N(D)N-region identity. Further evidence for in situ development of T cell progenitors in fetal gut comes from experiments of fetal intestine grafted into SCID mice, where pT{alpha} transcripts can be detected before and after 30 days of engraftment. T cells continue to divide in the grafts, and following engraftment there is a threefold increase in IEL numbers over day 0 levels.

In recent years, there has been intense interest in the phenomenon of extrathymic maturation of T cells, and many experimental mouse models have shown that gut T cell populations, especially in the epithelium, can mature in the absence of thymic influences. Embryologically and phylogenically, it would make sense for the intestine to be able to support T cell maturation because the intestine, like the thymus is endodermally derived, arising from the third pharyngeal pouch during embryologic development (27). It has been suggested that T cell generation in the gut associated lymphoid tissue (GALT) predates the emergence of the thymus in evolution with the gut, playing a major hematopoietic role before the development of the thymus (2). The evolutionary importance of the gut in T cell development is well-illustrated by the hagfish, which has no thymus, but T cell maturation and education takes place in the intestinal lamina propria (28).

Two recent studies have reported that production of T and B cells may take place in novel crypt lamina propria lymphoid aggregates named cryptopatches in mice (29, 30). Notably these structures are present in nude, SCID, and RAG-2-/- mice but are absent in IL-7-/- mice, suggesting their independence from the thymus and hematopoietic characteristics, respectively. c-kit+ cells isolated from cryptopatches are capable of reconstituting the {alpha}ß and {gamma}{delta} IEL populations of SCID mice upon adoptive transfer (30). However, cryptopatches cannot be identified in human fetal intestine.

Efforts to find similar populations of extrathymically derived T cell populations in humans have been less successful. We have previously described a population of CD8ß- (CD8{alpha}{alpha}) T cells in human fetal gut epithelium and lamina propria that is scarce in adult gut (31). This phenotype has been shown to be thymus-independent in mice (5). RAG-1 and RAG-2 transcripts have been detected in adult human gut epithelium, but no TdT or pT{alpha} has been reported at this site (9, 10). However, the study reporting RAG in the adult gut was solely based on RT-PCR and consequently gives no indication of the number of cells expressing RAG. In addition, TdT is not expressed in adult intestine, but the T cells in the adult gut have extensive TCR junctional diversity. These observations suggest that any TCR recombination that may be occurring in the adult gut does not contribute a great deal to the expressed TCR repertoire, and the T cells in the adult intestinal epithelium are most likely derived from the thymus. RAG-1 and -2 along with pT{alpha} have been detected in adult liver; however, it is not understood to what extent T cell generation at this site contributes to the adult T cell repertoire or what function T cell generation in the liver serves (32). Evidence for the extrathymic generation of a population of {gamma}{delta} T cells has been reported in a patient with thymic aplasia who had circulating T cells expressing the V{delta}2 chain of the {gamma}{delta} TCR (33). Because T cells expressing V{delta}2 are not present in the thymus but V{delta}2 is expressed in a minority of adult {gamma}{delta} TCR+ IEL, and is the sole TCR type in fetal IEL, it has been suggested that this {gamma}{delta} population in the epithelium represents bone marrow emigrants educated in the intestinal epithelium (15).

The human thymus is populated by fetal liver and fetal bone marrow CD7+ emigrants between 7–8 wk of gestation. The CD3-7+ T lymphocytes identified in abundance in fetal gut in this study may represent a progenitor T cell population yet to undergo TCR rearrangement. CD7 is an early T lineage marker not found on myeloid or erythroid lineages and as such is a good marker for T cells that have not yet expressed markers of later T cell subsets such as CD3, CD4, or CD8 (34). Interestingly, in the fetal gut epithelium there are more CD2-7+ IELs than CD3-7+. As CD2 is expressed on developing T cells before CD3 (35), we expected to see less CD2-7+ IELs and more CD3-7+. However, it has been reported in mice that IEL are bimodal with respect to CD2 expression (36), with 50% of TCR {alpha}ß+ IEL being CD2- and TCR {gamma}{delta}+ IEL being predominantly CD2-. Therefore, it is likely that subsets of human fetal IELs also do not express CD2. Developing thymocytes at various stages of their maturation display activation markers (37) and CD45RO (38). Expression of the CD45RO isoform is associated with progression into programmed cell death during negative selection (38). T cells in the fetal intestine express markers of activation such as HLA-DR, CD25, {alpha}Eß7, and CD62L-, and the majority also express CD45RO. Expression of a large array of activation markers and CD45RO in the absence of antigenic stimulation from the gut lumen makes it likely that these cells are acquiring these markers via a pathway other than classical Ag stimulation and may be acquiring them in a manner similar to developing thymocytes. Further evidence that the T cells of the fetal intestine are not thymic emigrants comes from the observation that they do not express {alpha}4ß7 integrin (Act-1), which is normally required for entry into the gut via mucosal address in cell adhesion molecule (MAdCAM) expressed on gut endothelial cells (A. Dogan, unpublished observation).

Evidence that maturation and TCR recombination are occurring in situ in fetal intestine comes from our analysis of TCR Vß CDR3 regions from multiple randomly cloned Vß PCR products from LPL, IEL, and blood. Because the fetal intestinal lumen is essentially sterile until birth and organized Peyer’s patches do not form until around 19 wk gestation, thus excluding the possibility of recirculation of T cells from Peyer’s patch efferent lymphatics, we hypothesized that if TCR Vß recombination occurs in situ in the fetal gut, clones of TCR should be detectable in gut that are not found in the blood. Extensive sequence analysis shows this to be the case. Out of over 200 clones analyzed, all but three in this study were restricted to one site alone (LPL, IEL, and blood). It is also notable that of the four Vß families that we analyzed in two specimens of fetal intestine, IEL populations were polyclonal. However, this is negative data with no clones being identified between the three sites analyzed; previous studies that showed obvious clonality of IELs in adult intestine found dominant clonality of certain CDR3 regions after analysis of under 30 random clones (11, 12). Because IELs express a restricted TCR repertoire in adult intestinal mucosa, quite different to the situation described here, it is likely that the driving force behind this restriction of the TCR repertoire in adult gut is Ag driven. The polyclonality of TCR usage in fetal intestinal IEL may be due to selection before birth on a wide array of selecting Ags either in the thymus or the intestinal microenvironment. The gut is exposed to dietary and microbial Ags at birth, and it is likely that this causes expansion of T cells bearing TCRs capable of responding to the predominant Ags in the gut lumen in the neonatal period.

We have used pT{alpha} as a tool to analyze whether TCR recombination may be on-going in fetal intestinal T cells. pT{alpha} is a 33-kDa glycoprotein that associates with the TCR ß-chain at the cell surface before germline recombination of the TCR {alpha}-chain (39). It is exquisitely T-lineage-specific and is only expressed on prothymocytes and at sites that support extrathymic development (40, 41) and not on myeloid, NK, or B cells. Our finding that pT{alpha} is expressed in fetal intestine suggests that TCR recombination is occurring in situ. This conclusion would agree with Koningsberger and colleagues who identified in very early gestation fetuses TCR-ß transcripts in the absence of rearranged TCR {alpha}-chains (19). Our observation that following engraftment of human fetal gut into SCID mice pT{alpha} mRNA is still detectable may be explained if the human fetal gut contains an as yet unidentified T precursor population that is self-renewing in vivo. pT{alpha} message is expressed in pro-T cells, which in the thymus have a lifespan of 3 days (26); thus, the pT{alpha} we detect here in the transplants after 30 days is representative of on-going TCR rearrangement during this period. One of the most remarkable observations in these experiments was the marked increase in IEL numbers after transplantation of fetal gut into SCID mice. We have not excluded the possibility that the increase in IEL numbers in engrafted fetal intestine is due to an anti-mouse response; however, this is not a major problem in the human PBL-SCID model, which is well-established, and problems of graft-vs-host disease in this system are only seen when large numbers of PBLs in association with NK cells are transferred (42). We cannot discount the possibility that some growth factors in the SCID mice recipients may induce this expansion of human IEL. However, over a 30-day period during fetal development IEL numbers also increase by two- to threefold during normal ontogeny (Fig. 1Go).

It has been shown that the earliest thymic T lymphocyte precursors (thymic lymphoid progenitors) are dependent on IL-7 and stem cell factor for survival and maturation (43). The necessity for IL-7 for thymic lymphoid progenitor survival is well-demonstrated by IL-7 and IL-7R knockout mice, which have a greatly reduced thymic mass and virtually no peripheral T cells (44, 45). We have performed immunocytochemistry for both IL-7 and CD117 (stem cell factor receptor) in fetal intestine and can detect IL-7 abundantly in the intestinal epithelial cells and CD117 on occasional cells in the lamina propria (T.T.M. and D.H., unpublished observations). If TCR recombination is indeed occurring in the CD7+3- T cell population in the gut, it should be possible to detect partially rearranged or incomplete rearrangements of the {gamma}{delta} or TCR-{alpha}ß genes in this population as the germline TCR gene segments stochastically rearrange. Also, in situ hybridization experiments may be necessary to confirm the position and cell types expressing pT{alpha} in the fetal gut. These studies are currently underway in our laboratory.

Finally, because our analysis of intestinal T cell subsets is restricted to specimens in which thymus development is complete, we cannot rule out the possibility that the CD3-7+ intestinal T cells reported here represent early thymus emigrants. It is conceivable that early "leakage" occurs from the thymus of CD3-7+/- pT{alpha}- T cell progenitors that seed the fetal intestine to complete their developmental program in the gut.

In conclusion, the human intestine shares many features with primary lymphoid organs before birth; therefore, it will be of considerable interest to examine whether the education of progenitor T lymphocytes on gut-specific ligands occurs at this time and what, if any, role development of T lymphocytes in the intestine before birth plays in the repertoire of Ag reactivity at birth.


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Table II. CDR3 analysis of TCR Vß RT-PCR products from fetal intestinal LPL, IEL, and matched blood lymphocytes

 

    Acknowledgments
 
We thank the Wellcome Trust and Dr. Les Wong, and Professor J. A. Walker-Smith for access to samples of postnatal intestine, and Smaira Wahid for expert assistance with SCID mouse transplantation.


    Footnotes
 
1 D.H. is supported by the Special Trustees of St. Bartholomew’s Hospital. Back

2 Address correspondence and reprint requests to Dr. Thomas T. MacDonald, Paediatric Gastroenterology, Suite 3.1, 59 Bartholomew Close, St. Bartholomew’s Hospital, London, U.K. EC1A 7BE; E-mail address: Back

3 Abbreviations used in this paper: LPL, lamina propria lymphocyte; IEL, intraepithelial lymphocyte; pT{alpha}, pre-TCR-{alpha}; TdT, terminal deoxynucleotidyltransferase. Back

Received for publication April 8, 1998. Accepted for publication July 22, 1998.


    References
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
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