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Gene Transcription and Rearrangements in Pre-B Cells1


*
Rosenstiel Research Center and Department of Biology, Brandeis University, Waltham, MA 02254;
National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi, India; and
Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701
| Abstract |
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-chain gene in response to LPS was
suppressed by PF, without affecting the induction of Rel family
proteins. In contrast,
induction by IFN-
was not suppressed by
PF, indicating that the drug inhibited certain activation pathways. We
also found that LPS-induced activation of germline
transcription
and V
to J
recombination were inhibited by PF in the pre-B cell
line 38B9. These observations suggest that PF may adversely affect B
lymphopoiesis during chronic administration. | Introduction |
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production by monocytes and macrophages (1).
However, there is considerable evidence that PF affects many different
cell types, including lymphocytes (2, 3, 4, 5, 6). Despite its clinical
relevance, surprisingly little is known about the molecular mechanisms
of PF action. We initiated a study of this drug (7) because of a
proposed connection with the regulation of the transcription factor,
nuclear factor-
B (NF-
B). We found that PF inhibited the induction
of c-Rel protein, but not other NF-
B family members such as RelB and
p65, in activated T lymphocytes. The effect was remarkably specific in
that several other inducible transcription factors known to be
important for T cell activation, such as nuclear factor of activated T
cells (NF-AT) and AP-1, were unaffected. Transcription factor
dysregulation was reflected in the suppression of IL-2 gene induction,
but there was no effect on the activation of the IL-2R
-chain
(IL-2R
) gene. Because both promoters have been implicated as targets
of NF-
B proteins, these observations were consistent with the
promoter-specific use of Rel family proteins. We proposed that c-Rel
was required for IL-2 gene induction, whereas p50/p65 was likely to be
the functional IL-2R
promoter factor. In contrast to the effects
seen in T lymphocytes, PF treatment during B cell activation did not
affect NF-
B induction, suggesting that B and T lymphocytes responded
differently to this drug.
NF-
B induction has been implicated in the differentiation of pre-B
cells to B cells. Most pre-B cell lines have very little nuclear
NF-
B whereas mature B cells contain constitutively nuclear NF-
B.
Induction of NF-
B during the pre-B to B cell transition has been
proposed to play a role in the activation of the Ig
light chain
locus, via its positive effect on the
intron enhancer (8, 9). For
example, LPS induction of
gene expression in 70Z cells, or
gene
recombination in 38B9 cells, has been shown to be NF-
B dependent
(10). However, it must be noted that recent gene disruption experiments
have raised doubts about the importance of the
enhancer/NF-
B
system during B cell differentiation. Specifically, disruption of
several NF-
B family genes (11, 12, 13, 14), such as p50, p65, and
c-Rel, did not show significant effects on B cell
differentiation. These result may be explained by postulating
functional redundancy among Rel proteins; that is loss of p65, for
example, may be functionally compensated by another Rel protein such as
c-Rel. Conversely, genetic deletion of the
intron enhancer (and
thereby the only known NF-
B-dependent regulatory sequence in the
locus) also had only a small decrease in the generation of
-producing B cells (15). Interestingly, those cells that did produce
light chains expressed this protein at equivalent levels as
wild-type (enhancer-containing) cells. Therefore, the
enhancer is
not essential for B cell ontogeny. However, the decreased numbers of
-producing cells suggests that the
intron enhancer contributes
to the efficiency of
gene rearrangement.
In this paper, we investigated whether PF affects NF-
B-dependent
transcription and recombination in pre-B cells. We found that
LPS-induced
expression in 70Z cells was blocked by PF without any
discernible effect on the induction of Rel proteins. Inhibition
occurred at the level of
mRNA production. In 38B9 cells,
LPS-induced
germline transcription as well as
recombination was
inhibited by PF, again without affecting NF-
B induction. However,
induction of
transcription by IFN-
was not suppressed by PF.
Because IFN-
-mediated
gene induction proceeds by an
NF-
B-independent pathway (16), our results are consistent with
postinduction modulation of NF-
B activity resulting in decreased
transcription and recombination. Furthermore, these observations
suggest a possible deleterious effect of PF on B cell
lymphopoiesis.
| Materials and Methods |
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70Z/3 and 38B9 pre-B cell lines were grown in RPMI 1640 medium supplemented with 10% inactivated FBS plus penicillin and streptomycin. ß-Mercaptoethanol was included in the growth medium at a concentration of 5 x 10-5 M. LPS (Difco Laboratories, Detroit, MI) activation was conducted at a concentration of 10 µg/ml for the times indicated. PF (Sigma Chemical Company, St. Louis, MO) was used at various concentrations as indicated in the figure legends.
D10.G4.1 (Th2) cells were stimulated with 2 µg/ml Con A for 24 h
and the Con A was neutralized by addition of
-methylmannoside (9
mM). Supernatant from activated cells were used in several experiments
and is referred to as Th2 filtrate. The concentration of IL-4 in the
filtrate was estimated at 200 U/ml against a standard curve using rIL-4
and CTLL-2 cells. rIL-4 and IFN-
were obtained from Genzyme Corp.
(Boston, MA). The anti-IL-4 mAb, 11B11, was purified over an
anti-rat Ig column from hybridoma culture supernatants and used at
a final concentration of 3 µg/ml in culture.
Cell staining and analysis
The reagents used for staining were: goat anti-mouse
-fluorescein (Southern Biotechnology, Birmingham, AL); mAb187.1 (rat
anti-mouse Ig
; American Type Culture Collection, Bethesda, MD;
HB58) labeled with either biotin or fluorescein; mouse anti-rat
Ig
fluorescein (MAR18.5, TIB216); avidin-fluorescein (Vector,
Burlingame, CA). Cells stained with goat anti-mouse Ig
Fc-fluorescein (Cappell, West Chester, PA), mouse anti-rat Ig
fluorescein or avidin-fluorescein were utilized as negative controls.
Cells were fixed in 0.5% paraformaldehyde before analysis on a Coulter
Epics 752 (Coulter, Hialeah, FL) or a FACScan. A total of 10,000 cells
were counted, and data were analyzed with either EASY2 or Consort 30
software.
Protein assays
Preparation of nuclear extracts, electrophoretic mobility shift
assays (EMSA), and Western blotting was conducted as previously
described (7). EMSA probe for NF-
B was the H2K sequence element
(17). Anti c-Rel (SC71) and Rel B (SC226x) antisera were obtained from
Santa Cruz Biotechnology (Santa Cruz, CA) and used at 1:500 dilution
for immunoblotting.
RNA analysis
Total cellular RNA was isolated using Ultraspec procedure
(Biotecx Laboratories, Houston, TX) for experiments shown in Figures 2
and 6
. Cytoplasmic RNA was prepared as described by Maniatis et al.
(18) for the experiments shown in Figure 4
. For Northern blot analysis,
RNA was fractionated through 1% agarose gels containing formaldehyde,
transferred to nitrocellulose filters, and hybridized with the
following 32P-labeled probes: 0.4 kb PstI
fragment containing C
derived from pES202, 0.5 kb
SacI-KpnI fragment derived from exon II of
ß2-microglobulin, and 0.8 kb fragment derived from the
rat GAPDH gene.
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transcripts were detected as previously described (19)
with minor modifications. Three micrograms of total RNA (Ultraspec)
from 38B9 cells was reverse transcribed (dNTPs 1.5 mM, 0.2 µM
J
2 primer, 20 U AMV reverse transcriptase (Boehringer
Mannheim, Indianapolis, IN), 0.25 µl RNAsin) in a final volume of 20
µl at 42°C for 1 h. The reaction was diluted to 200 µl with
TRIS-EDTA and 4 µl taken for PCR amplification using
J
2 and
o primers. PCR reactions contained
0.2 mM dNTPs, Vent polymerase (New England Biolabs, Beverly, MA) in a
final volume of 100 µl. A total of 28 cycles of 1 min denaturation at
94°C, 1.5 min annealing at 52°C, and 1.5 min elongation were used
with a final elongation time of 7 min at 72°C. Twenty microliters of
the reaction was electrophoresed through 1% agarose gels, and blotted
onto nylon membrane (ICN, Aurora, Ohio), which was probed with the C
probe described above.
Nuclear run-on assays were performed essentially as described by
Greenberg and Ziff (20). Nuclei were prepared from 70Z cells treated
with LPS in the presence, or absence, of PF for 18 h. After 30 min
transcription in vitro, the nuclei were treated sequentially with DNase
I (10 min) and proteinase K (30 min). RNA was purified by two rounds of
phenol extraction and precipitated with isopropanol. Six micrograms of
linearized pSP72 (negative control), a pSP72 derivative containing a
0.4-kb PstI fragment encoding C
sequences or a plasmid
containing GAPDH sequences, were immobilized on Hybond nylon membrane
and hybridized to radioactive RNA (5 x 106 cpm/ml).
The membranes were washed extensively and analyzed by phosphor imager
quantification.
V
-J
recombination assays
One microgram of sheared genomic DNA isolated from 38B9 cells
was used in PCR reactions containing J
2 primer and
degenerate V
primers as described (19). One-fifth of the reaction
was electrophoresed through 1% agarose gels and blotted onto nylon
membranes, which were probed with a 32P-labeled 2.8-kb
HindIII fragment containing all five murine J
gene
segments.
| Results |
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-chain expression in 70Z cells
70Z cells have been widely used as model system to study the
differentiation of pre-B cells to B cells. These cells contain
productively rearranged Ig heavy (µ) and
light chain genes, but
express only the IgH gene. Stimulation of cells by various inducers
such as bacterial LPS, phorbol ester, and IFN-
induces
gene
transcription and subsequent expression of Ig at the cell surface.
Activation of
transcription by the first two reagents has been
proposed to proceed via an NF-
B-dependent mechanism, whereas that by
IFN-
is apparently independent of NF-
B. We tested the effects of
the drug PF, which has been implicated in dysregulation of
NF-
B-dependent transcription, on
induction in 70Z cells.
Cells were treated with LPS in the absence, or presence, of PF and
assayed for surface
expression by flow cytometry (Fig. 1
A). LPS activation induced
expression as expected (Fig. 1
A, panel B),
which was significantly diminished in the presence of PF (Fig. 1
A, panel D). Treatment of the cells with PF
alone did not affect
expression (Fig. 1
A, panel
C). The effect of PF on
expression was most evident at PF
concentrations greater than 100 µg/ml as shown in the dose-response
curve in Figure 1
B. Northern blot analyses showed that PF
blocked
gene expression at the level of mRNA production (Fig. 2
A). Equal loading of RNA was
confirmed by reprobing the filter with a probe for the GAPDH gene. We
further examined the effect of different amounts of PF on
mRNA
production (Fig. 2
B). Dose-dependent suppression of
mRNA
was observed, with half-maximal suppression requiring 30 µg/ml PF. To
rule out deleterious side effects of PF treatment on these cells, we
evaluated cell viability and growth rate of 70Z cells in the presence
of the drug. Cell viability as assessed by trypan blue exclusion was
the same as untreated control cells (>95% viable cells over a 6-day
treatment period) (data not shown). At the end of 6 days, total cell
numbers were reduced twofold in the PF-treated samples compared with
the untreated cells (data not shown). Because these cells grow rapidly
(approximately 10 to 12 h doubling time), these observations
suggest that PF has a small effect on 70Z cell growth. Most experiments
reported in this paper were conducted after 18 to 24 h of PF
treatment, when neither cell numbers or viability were affected.
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mRNA levels in cells activated in the presence of
PF could be due to reduced gene transcription or increased mRNA
degradation. To distinguish between these possibilities we assayed
transcription rate of the
gene by nuclear run-on assays. 70Z cells
were treated with LPS in the presence or absence of PF for 18 h
before isolation of nuclei, which were used to synthesize radioactive
RNA in vitro. C
RNA was quantitated by hybridization to excess C
DNA immobilized on nylon membranes. Compared with a GAPDH control,
significant C
RNA was detected in nuclei prepared from LPS-treated
70Z cells (Fig. 3
RNA was significantly diminished, compared
with GAPDH, in nuclei of cells activated in the presence of PF (Fig. 3
gene transcription is reduced
approximately 10-fold in PF-treated 70Z cells.
|
mRNA
stability. 70Z cells were activated with LPS for 18 h followed by
addition of actinomycin D alone or together with PF. Cellular RNA
extracted at several subsequent times were assayed by Northern blots
for C
transcripts. Up to 3 h following the termination of
transcription, no differences in
mRNA levels were detected in the
presence or absence of PF. Decreased viability of cells with extended
actinomycin D exposure precluded analysis at longer time points. These
observations suggest that stability of
mRNA is not significantly
affected by PF. We conclude that the primary effect of PF is to reduce
gene transcription in 70Z cells.
To investigate whether the decrease of
mRNA was due to an effect on
NF-
B, we examined NF-
B activation by EMSA. As previously
demonstrated, NF-
B activity was strongly induced in 70Z cells
treated with LPS (Fig. 4
A,
lanes 1 and 2). However, no decrease in NF-
B
activity binding was detected in nuclear extracts derived from cells
activated by LPS in the presence of PF (Fig. 4
A, lane
3). Treatment of cells with PF alone was not sufficient to
activate NF-
B binding (Fig. 4
A, lane 4). It
has been previously suggested that the NF-
B family member c-Rel may
be the functional
enhancer (and thereby
gene expression)
activating protein in these cells (21, 22). Because EMSA is skewed
toward the detection of p50/p65 heterodimers, we examined the nuclear
expression of c-Rel by immunoblotting. Nuclear c-Rel was induced after
4 h LPS treatment (Fig. 4
B, lanes 1 and
2). However, c-Rel induction was not affected by PF (Fig. 4
B, lanes 3 and 4). Thus, the
difference in
mRNA production was not due to diminished c-Rel
expression. In the NF-
B-deficient plasmacytoma S107,
expression
and demethylation can be restored by stable expression of Rel B (23).
These observations have suggested that Rel B may be necessary for
gene expression. We therefore evaluated Rel B expression in 70Z cells
by immunoblotting. No differences were observed in the levels of
nuclear Rel B in the presence, or absence, of PF (Fig. 4
C).
We conclude that inhibition of
mRNA occurs without any apparent
change in the expression of Rel family proteins.
IL-4 and PF differently affect
gene induction by IFN-
Several stimuli are known to induce
expression in 70Z cells.
While most proceed via induction of NF-
B, IFN-
activation is of
particular interest because it has been proposed to activate via an
NF-
B-independent pathway (16). We assayed the effects of agents that
suppress
expression on the alternative modes of
gene induction.
IL-4 has been previously described to suppress LPS mediated
induction without significant effect on NF-
B DNA binding (24).
LPS-mediated activation of cell surface
expression was reduced in a
dose-dependent manner by a filtrate from an activated Th2 clone,
D10.G4.1 (Fig. 5
A). This
effect was blocked by the anti-IL-4 mAb, 11B11, and reproduced by
rIL-4 (data not shown). IL-4 also suppressed
induction at the mRNA
level (Fig. 5
B). Neither Th2 filtrate alone nor rIL-4
affected
mRNA production (Fig. 5
B, lanes 1,
3, and 5). However, the strong induction of
mRNA by LPS (Fig. 5
B, lane 2) was significantly
reduced when activation was conducted in the presence of Th2 filtrate
or rIL-4 (Fig. 5
B, lanes 4 and 6,
respectively). Thus, IL-4 and PF have similar effects on LPS-mediated
gene expression in 70Z cells.
|
gene expression
by IFN-
. Treatment of 70Z cells induced detectable levels of cell
surface
expression (Fig. 6
gene induction.
PF suppresses sterile
transcription and gene rearrangements
Despite the value of 70Z cells as a probe for the pre-B to B cell
transition, these cells represent a late pre-B cell stage because they
have already undergone functional V
to J
recombination. To extend
our observations with PF in 70Z cells, we assayed Abelson murine
leukemia virus-transformed 38B9 cells. Because these cells undergo
VH to DJH recombination in culture, and
maintain their
loci in a predominantly germline configuration, they
represent an earlier stage of pre-B cell differentiation compared with
70Z cells (25). However, LPS treatment of these cells induces NF-
B,
germline
transcription, and
gene rearrangements (19).
In EMSA, NF-
B DNA binding was strongly induced in 38B9 cells treated
with LPS (Fig. 7
A, lanes
1 and 2), and PF treatment did not affect NF-
B
induction, as observed previously in 70Z cells (Fig. 7
A lanes
3 and 4). However, LPS induced sterile transcription of
the germline
locus was markedly diminished in the presence of PF
(Fig. 7
B). Sterile transcription was assayed as previously
described using specific primers to amplify cDNA synthesized from total
cellular RNA, followed by electrophoretic separation and Southern
blotting using a C
-specific probe. This procedure detects a
transcript that is initiated 3.5 kb 5' of the J
gene segments and
spliced to the C
exons (26). Untreated 38B9 cells do not contain
detectable levels of this transcript, which was significantly induced
after LPS treatment (Fig. 7
B, lanes 1 and
2, marked by the arrow). LPS activation in the presence of
PF decreased the germline transcript (Fig. 7
B, lane
3) and PF treatment alone had no effect compared with untreated
cells (Fig. 7
B, lane 4). The results in Figure 7
B were obtained using RNA from cells that had been
activated for 18 h. Phosphor imager quantification of this data
showed an approximately 90% decrease in the levels of germline
mRNA (data not shown). As a control, GAPDH mRNA was also amplified by
PCR from the same samples (Fig. 7
B, lower gel,
labeled GAPDH). Analysis of RNA obtained from cells activated for
36 h showed a similar pattern of activation and suppression of
germline transcripts (data not shown). We conclude that induction of
germline
transcripts is also blocked by PF.
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locus transcription, the 38B9 cell line
provides an opportunity to investigate the effects of PF on the
induction of
gene rearrangements. These cells have been previously
shown to undergo LPS-induced
recombination, which can be assayed by
PCR (19). Genomic DNA prepared from 38B9 cells treated with LPS in the
presence, or absence, of PF was used to assay
recombination. Linear
conditions for the PCR assay were confirmed by using different amounts
of genomic DNA to amplify the C
locus (Fig. 8
rearrangement by LPS (Fig. 8
locus.
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| Discussion |
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gene transcription,
which occurs during differentiation of pre-B cells to B cells, is
inhibited by PF. Furthermore, reduced germline transcription of the
unrearranged
locus is reflected in decreased V
to J
rearrangements. These results suggest that B lymphopoiesis may be
affected during the clinical use of PF.
The
locus is regulated by two enhancers. One is located in the
J
-C
intron (i
E) and the second 3' of the C
exons (3'
E)
(27, 28). Several lines of evidence suggest that the activation of the
rearranged
gene in 70Z cells, or the germline locus in 38B9 cells,
is dependent upon the intron
enhancer. First, the intron enhancer
is LPS inducible because of the presence of an NF-
B-binding site,
whereas the 3'
enhancer is not LPS inducible. Because
transcription in both these cell lines is strictly LPS dependent, the
intron enhancer has been considered to be the critical regulatory
target. Second, inhibition of NF-
B induction by the use of
nondegradable I
B derivatives has been shown to prevent
transcription in both these cell lines (10). Because only the
intron enhancer, and not the 3'
enhancer, is regulated by NF-
B,
it is likely that activation of the intron enhancer is the major
regulatory event necessary for
transcription in these cells.
Because induced
transcription is inhibited by PF in these cells, we
propose that PF inhibits activation of the intron
enhancer. One
other experimental result is consistent with this hypothesis. We also
examined the effect of PF on the induction of germline
transcription in a pre-B cell line transformed by a
temperature-sensitive abl oncogene (29, 30). When grown at
the permissive temperature, these cells are phenotypically similar to
standard Abelson retrovirus-transformed cell lines. Specifically,
NF-
B and
gene expression is low. However, when shifted to
nonpermissive temperature, NF-
B induction and germline
transcription occurs. However, the 3'
enhancer is not activated
before, or after, temperature shift, suggesting that
transcription
is dependent only on the intron enhancer (30). In these cells as well,
we observed decreased germline
transcripts in the presence of PF
(data not shown). Overall, we suggest that PF inhibits activation of
the
intron enhancer.
A role for NF-
B in suppression of
gene expression by PF is also
suggested by the inability of this drug to affect IFN-
-mediated
gene induction. In contrast to several other
-activating agents such
as LPS and phorbol esters, which also induce NF-
B, IFN-
has been
proposed to activate
transcription by an NF-
B-independent
pathway (16). Our results indicate that PF suppresses
expression
only when the gene is activated by an NF-
B-dependent mechanism. It
is interesting to note that IL-4 appears to be a more general inhibitor
of
transcription, blocking
gene induction by both
NF-
B-dependent and NF-
B-independent pathways. In this context, it
would appear that the partial suppression of LPS-induced NF-
B by
IL-4 (24) may not be primarily responsible for inhibition of
expression.
The NF-
B-binding site in the
intron enhancer is a key
determinant of enhancer activity. However, we found that induction of
several Rel family proteins, including NF-
B (p50/p65), c-Rel, and
Rel B, was unaffected by PF. One interpretation of these results is
that the NF-
B site may not mediate PF-dependent suppression.
Alternatively, it is possible that post-translational modification of
Rel proteins in response to PF may alter their activating properties
without affecting DNA binding. Although there is evidence for the
phosphorylation of Rel proteins, the regulatory consequences of such
modifications have not been well defined (31, 32). PF is a methyl
xanthine derivative that is believed to function as a phosphodiesterase
inhibitor, resulting in elevation of intracellular cAMP. However,
effects of PF do not always correlate with increased cAMP. In
particular, in 70Z cells cAMP has been shown to activate
light
chain expression (33), whereas we found that PF inhibited
gene
induction by LPS. Nevertheless, the possible intersection with the cAMP
pathway is intriguing because of earlier studies that functionally link
Rel proteins, such as dorsal and v-rel, with protein kinase A (34, 35).
Although the mechanism of PF function in pre-B cells remains unclear at
present, our findings reveal a potentially deleterious side effect of
PF administration on B lymphopoiesis.
| Footnotes |
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2 Address correspondence and reprint requests to Ranjan Sen, Rosenstiel Research Center, MS029, Brandeis University, Waltham, MA 02254. ![]()
3 Abbreviations used in this paper: PF, pentoxifylline; EMSA, electrophoretic mobility shift assay; GAPDH, glyceraldehyde phosphate dehydrogenase. ![]()
Received for publication April 30, 1997. Accepted for publication November 3, 1997.
| References |
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enhancer and its binding factor NF-
B in the developmental regulation of
gene transcription. Cell 48:121.[Medline]
gene transcription and rearrangement in precursor B lymphocytes. Immunity 5:563.[Medline]
B leads to multifocal defects in immune responses. Cell 80:321.[Medline]
B/Rel family. Cell 80:331.[Medline]
B-related sequences: modulation of activity in B cells by human T-cell leukemia virus type I tax gene. Proc. Natl. Acad. Sci. USA 88:2141.
locus: sequence of the initiation region and comparison of activity with a rearranged V
-C
gene. Cell 27:593.[Medline]
locus contains a second, stronger B-cell-specific enhancer which is located downstream of the constant region. EMBO J. 8:1959.[Medline]
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