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*
Unité de Biologie des Régulations Immunitaires, et
Unité de Programmation Moléculaire et Toxicologie Génétique (CNRS-URA1444), Institut Pasteur, Paris, France; and
Institute for Animal Science and Health (ID-DLO), Lelystad, The Netherlands
| Abstract |
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| Introduction |
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Recent studies have increased our knowledge of the mechanisms of the intracellular transport of MHC class II molecules with escorting invariant chain and HLA-DM/H-2 M molecules (5). However, the complexity of Ag processing resides in the intersection of the retrograde transport of the Ag under proteolyis in the endocytic route with the anterograde transport of MHC class II molecules to the plasma membrane. Therefore, the unanswered question concerning Ag processing is how protein Ag deals with both proteases and class II molecules. The identification of several compartments rich in stable class II/peptide complexes, such as lysosome-like MIIC (6, 7, 8) or endosome-like CIIV (9), which are thought to be the peptide-loading vesicles, suggests that the egress of peptide/MHC complexes to the cell membrane can take place at many points in the endocytic route (10).
Originally, it was proposed that the hierarchy of peptide presentation was due to the affinity of peptides for class II molecules, but also resulted from a competition process among these different peptides for binding to class II molecules (11). The intrinsic properties of the processed peptides are of most importance for the formation of stable peptide/MHC complexes with long half-lives (12, 13). However, does the competition for class II molecules between the peptides contained within a single protein Ag act as a driving force for their presentation to T cells? If such a mechanism plays a major role in T cell determinant selection, then the emergence of a T cell response to several determinants must be an equilibrium of presentation by MHC molecules among the different peptides, and it is expected that the addition or deletion of a given peptide within the protein sequence would result in a noticeable perturbation of the previous equilibrium.
The hypothesis of competition relies on experiments performed with free synthetic peptides that bypass the intracellular processing events for binding to class II molecules (14). We have reinvestigated the question of intramolecular competition between peptides belonging to the same antigenic molecule using chimeric proteins for which the intracellular processing is a prerequisite for MHC presentation. We have previously shown that immunogenic peptides genetically inserted in internal positions of a recipient protein can be efficiently presented by class II molecules and can activate specific T cells (15, 16, 17, 18, 19, 20, 21). The success of this strategy in many different systems (22, 23, 24, 25) suggests that the competition between the foreign inserted peptide and the recipient protein does not influence the processing and presentation of the inserted epitope, unless the MHC binding of the foreign peptide affects the presentation of the peptides of the recipient protein.
Here, we used recombinant Escherichia coli MalE proteins carrying the PreS:T T cell determinant from hepatitis B surface Ag (HBsAg)3 (18). We first demonstrated that the PreS:T peptide and the immunogenic peptides of the MalE recipient protein can compete in vitro for binding to I-Aq class II molecule. In vivo, after immunization of DBA/1 (I-Aq) mice with an equimolar mixture of the PreS:T and the MalE peptides, the PreS:T peptide was shown to compete with several MalE peptides for the induction of proliferative responses. In contrast, when the potent competitor PreS:T peptide was introduced in different permissive insertion sites into MalE, as a single or as multiple copies, it was unable to interfere in vivo with the presentation of the T cell determinants of the recipient protein. Our results clearly show that within chimeric MalE-PreS:T proteins, the immunologic behavior of the inserted viral determinant and of the T cell determinants of the MalE protein are independent of each other, indicating that at the protein level these T cell determinants do not compete for MHC presentation and T cell activation in vivo. This view is also supported by results obtained with mutant MalE proteins carrying deletions of MalE I-Aq binding sequences, since such modifications of the protein sequence did not modulate the immunogenicity of the remaining MalE T cell determinants. Altogether, our results indicate that under real in vivo conditions, peptide competition may not play a major role in the immunodominance phenomenon.
| Materials and Methods |
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Eight- to twelve-wk-old DBA/1 inbred mice were used in all experiments and were purchased from the animal colony of the Pasteur Institute (Paris, France).
Peptides
Based on the sequence of MalE (26), a complete set of 385 overlapping 15-mer peptides was synthesized on polyethylene pins according to standard PEPSCAN procedures (27, 28). The final peptides were released from their support under basic conditions and contained a free amino terminus and an amidated C terminus. In addition to this mg scale synthesis, selected regions of the MalE sequence were synthesized at 20 mg scale according to standard synthesis procedures for peptides using Wang resin (p-alkoxybenzylalcohol resin, Bachem, Bubendorf, Switzerland) resulting in peptides with free amino and carboxyl termini. The PreS:T peptide corresponding to the 120- to 132-amino acid sequence of the PreS2 region of HBsAg (29) and the C3 peptide corresponding to the sequence of a neutralizing B cell epitope of poliovirus type 1 (30) were both synthesized by Neosystem (Strasbourg, France).
MalE mutant proteins
All of the E. coli-derived MalE chimeric proteins used in this study were previously described (18, 31). Mutant proteins were developed using a two-step genetic procedure. A BamHI linker was inserted into the malE gene, which was used to further insert a virus-derived peptide sequence. For all of the proteins used here, the first insertion step led to a short deletion in the malE gene sequence. Proteins were named according to the residue number of the mature MalE preceding the insert. MalE206C3, MalE211C3, and MalE339C3 correspond, respectively, to the deletion of amino acids 207 to 216, 212 to 220, and 340 to 357, followed by the second-step insertion of the C3 sequence coding for amino acids DNPASTTNKDK of VP1 protein from poliovirus type 1 (31). MalE133 and MalE303 mutant proteins carry deletions, respectively, of amino acids 134 to 142 and 304 to 309. Derived chimeric proteins MalE133-PreS:T and MalE303-PreS:T correspond to insertion of the PreS:T amino acid sequence (15). MalE133-PreS:T4B and MalE303-PreS:T4B proteins correspond to the insertion of four copies of PreS:T followed by 132145 sequence of HBsAg (18). MalE133-PreS:B corresponds to the insertion at site 133 of the PreS:B epitope from HBsAg and was used as a control. Production and affinity purification of all proteins were done as previously described (15).
Cell lines
M12C10 (H-2d/q) B-lymphoma cell was obtained by fusion of DBA/1 mice spleen cells with M12 cells (21). The I-Aq-restricted 52A12 T cell hybridoma was derived from DBA/1 mice and was specific for the PreS:T peptide (18).
In vitro competition assay
M12C10 cells (5 x 104) were fixed using glutaraldehyde and plated in RPMI 1640 supplemented with 10% FCS, antibiotics, 2 mM L-glutamine, and 5 x 10-5 M 2-ME, and were next incubated at 37°C for 4 h with 1 µM of peptide PreS:T in the absence or the presence of 0.5 to 125 µM of MalE competitor peptides. Cells were then washed three times and used as APCs to stimulate 105 PreS:T-specific T cell hybridoma 52A12. Eighteen-hour supernatants were tested using 104 cells/well of the IL-2-dependent CTLL cell line. Two days later, [3H]thymidine (0.4 µCi/well) was added, and the cells were harvested 18 h later with an automated cell harvester. Incorporated thymidine was detected by scintillation counting. Results are expressed as the percentage of response of the 52A12 T cell hybridoma to 1 µM of the peptide PreS:T in the absence of competitor peptide.
Proliferation assay
Mice were immunized s.c. with peptides or chimeric MalE proteins emulsified in CFA (Sigma Chemical Co., St. Louis, MO). Seven to ten days later, draining inguinal lymph nodes were removed, and single-cell suspensions were prepared and cultured in HL-1 medium (Hycor Biomedical Inc., Irvine, CA) with 2 mM L-glutamine. Lymph node cells (8 x 105) (LNC)/well were plated onto 96-well microtiter plates (TPP, Trasadingen, Switzerland) in duplicate or triplicate with the indicated peptides. After 3 days at 37°C, cells were pulsed for 18 h with [3H]TdR (NEN, Boston, MA). Incorporated radioactivity was measured by scintillation counting. Results were expressed as mean cpm from duplicate or triplicate culture wells. Results are representative of two to three experiments.
| Results |
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To map the dominant T cell determinants of the MalE protein, we
used 15 amino acid-long synthetic peptides that walk over the MalE
protein sequence with a single amino acid step. DBA/1 mice were
immunized with 0.25 nmol of MalE protein, and proliferation of LNC from
these mice was determined after in vitro stimulation with MalE
synthetic peptides. MalE synthetic peptides were first tested as pools
of 12 consecutive peptides to determine the dominant proliferative
regions of the molecule (Fig. 1
A). Eight pools of
peptides positively restimulated MalE-primed LNC, corresponding to MalE
sequences 7196, 83108, 107132, 191216, 203228, 263288,
323348, and 335360. As a second step, peptides from these positive
series were tested individually for MalE-primed LNC proliferation to
accurately map these T cell determinants. As seen in Figure 1
B, six nonoverlapping dominant determinants were detected
in DBA/1 mice, which can be defined by their core sequences as 8995,
116123, 198205, 211219, 274281, and 335341. We choose
peptides p8599, p112126, p195209, p207221, and p330344 among
the different MalE peptides to further study these T cell determinants.
Each of these peptides contains a single core sequence and gives a
strong proliferative response (Fig. 1
B). All of these
peptides are probably presented to T cells by the I-Aq
molecule, since only DBA/1 mice express this unique MHC class II
restriction element (32).
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To verify that peptides carrying these MalE determinants were able
to bind to I-Aq molecule, we performed an in vitro
competition experiment in which MalE peptides were assayed for their
capacity to inhibit the response of the 52A12 T cell hybridoma specific
for the PreS:T peptide of HBsAg in association with the
I-Aq molecule (18). As shown in Figure 2
, the stimulation of the 52A12 T cell
hybridoma by 1 µM of the PreS:T peptide was determined in the absence
or the presence of various amounts of the different MalE peptides (0.5
to 125 µM). The p330344 peptide competed strongly with the PreS:T
peptide for binding to I-Aq molecule, since 50% inhibition
of the maximal stimulation induced by 1 µM of the PreS:T peptide was
obtained with 4 µM of this peptide (IC50 = 4 µM).
Peptides p8599 and p112126 competed moderately for I-Aq
binding (IC50 = 39 µM), whereas p195209, p207221, and
p271285 competed weakly with the PreS:T peptide (IC50
values of 67, 64, and 81 µM, respectively). All of the
IC50 values were calculated from the experiment shown in
Figure 2
. These values vary slightly among the three experiments
performed, but the classification of these peptides in three distinct
categories was always identical. The control MalE peptide p4064 did
not modify the stimulation of 52A12 cells by the PreS:T peptide. These
results show that all of the six MalE peptides containing
DBA/1-reactive T cell determinants inhibited the binding of the PreS:T
peptide to I-Aq MHC molecule, but with various efficacy,
underlining a hierarchy in their capacity to bind I-Aq.
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To confirm these results obtained in vitro, we next assessed the
capacity of the MalE peptides to compete in vivo with the PreS:T
peptide for I-Aq binding by analyzing the T cell
response of DBA/1 mice immunized with the PreS:T peptide mixed with the
MalE peptides. To do so, we choose the peptides p207221, p8599, and
p330344, which, respectively, displayed weak, intermediate, and
strong relative inhibitory capacity in vitro. DBA/1 mice were immunized
either with the PreS:T peptide or the MalE peptides alone, or with an
equimolar mixture of the peptide PreS:T together with one of the three
MalE peptides. LNC from these mice were then tested for proliferative
response to the immunizing peptides. After immunization with peptide
PreS:T mixed with peptide p8599 (Fig. 3
A) or with peptide
p207221 (Fig. 3
B), the proliferative response to
p8599 and p207221 was reduced 50% as compared with the response
induced by these peptides injected alone, whereas the response to
PreS:T was unchanged in all cases. In contrast, as shown in Figure 3
C, coimmunization with the peptides PreS:T and p330344
induced a proliferative response to both peptides similar to or even
slightly higher than the one obtained with the peptides injected
separately. These results show that at a 1:1 molar ratio, the PreS:T
peptide impairs the in vivo presentation of MalE peptides of weak
(p207221) and intermediate (p8599) in vitro inhibitory capacity,
indicating that these two MalE peptides bind more weakly to
I-Aq than the PreS:T peptide. In contrast, the fact that
coimmunization with the p330344 and the PreS:T peptides triggered a
similar proliferative response than after separate immunization
suggests that both peptides bind I-Aq with a similar
efficiency.
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Deletion of MalE amino acid sequences containing a given T cell determinant does not alter the immunogenicity of the remaining T cell determinants
To investigate the phenomenon of competition for MHC presentation between the different peptides emerging from the processing of the same protein Ag, we used insertion/deletion mutants of the MalE protein in which T cell determinant sequences were partially deleted. The MalEC3 chimeric proteins are mutants of the MalE protein in which amino acid sequences were deleted and replaced by the 11-amino acid sequence of the peptide C3 of poliovirus (31). If peptide competition in relation to MHC binding plays an important role in the selection of T cell determinants during Ag processing, it can be expected that immunization with such mutant proteins would lead to quantitative modifications of the peptides displayed by MHC molecules and of the subsequent T cell responses.
Mice were immunized with either wild-type MalE protein or MalE206C3,
MalE211C3, or MalE339C3 chimeric proteins. Then, the proliferation of
LNC was examined in response to the six MalE peptides containing the
different T cell determinants previously characterized (Fig. 4
). As expected, after priming with
MalE206C3 and MalE211C3, which carry, respectively, the deletion of
sequence 207216 and 212220, disrupting the same T cell determinant
core sequence 211219 in two different ways, no proliferative response
to the peptide p207221 was observed (Fig. 4
D). In
contrast, the responses to the remaining T cell determinants using
peptides p8599, p112126, p195209, p271285, and p330344 were
unaffected as compared with the responses obtained after priming with
wild-type MalE protein. Likewise, the deletion of amino acids 340 to
357 in MalE339C3 abolished the induction of the p330344-specific T
cell response (Fig. 4
F), whereas the responses to
peptides p8599, p112126, p195209, p207221, and p271285 were
similar to that induced by the wild-type MalE protein.
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Lack of competition between MalE peptides and the PreS:T peptide when associated within the same molecule
Since in vitro and in vivo competition for I-Aq
binding between the PreS:T and the MalE peptides was shown using
synthetic peptides, we next tested whether this process occurs when
these peptides are part of the same molecule. The insertion of the
peptide PreS:T into MalE was realized in two internal insertion sites,
positions 133 and 303 (18). DBA/1 mice were immunized with 0.25 nmol of
MalE, MalE133-PreS:T, or MalE303-PreS:T protein and tested for
proliferative responses to the peptide PreS:T and the MalE peptides
(Fig. 5
). In these conditions, both
MalE133-PreS:T and MalE303-PreS:T induced an efficient PreS:T-specific
proliferative response, showing that the PreS:T-inserted peptide was
available on I-Aq molecules and that it was efficiently
presented to T cells. Furthermore, the eight-peptide series that
induced proliferation to MalE-primed LNC also stimulated LNC from mice
primed with either MalE133-PreS:T or MalE303-PreS:T, demonstrating that
the peptide specificity of the MalE-primed T cells was not affected by
the presence of the heterologous PreS:T peptide. Proliferative
responses obtained after restimulation with single MalE peptides
p8599, p112126, p195209, p271285, and p330344 displayed
similar dose curve responses after priming DBA/1 mice with MalE-PreS:T
and with wild-type MalE protein (data not shown).
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30-fold, but regarding the
PreS:T epitope stoichiometry in MalE133-PreS:T4B, this corresponds to a
10-fold increase. This result shows that the loading of the PreS:T
epitope on I-Aq molecules is strongly increased when
MalE-PreS:T4B proteins are used as Ag.
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| Discussion |
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In the present study, we tested this hypothesis with bound T cell peptide sequences in a model Ag, MalE. The central question is whether the competition process really drives the peptide presentation following intracellular processing events. After priming DBA/1 (I-Aq) mice with MalE protein, proliferative response to overlapping peptides revealed six distinct T cell determinants in this strain of mice. After priming with mutant MalE proteins carrying deletions within two of these determinants, the immunogenicity of the remaining T cell determinants was unchanged compared with the wild-type protein. Likewise, the insertion of a single copy or several copies of the PreS:T peptide from HBsAg into the MalE protein did not affect the immunogenicity of the MalE T cell epitopes, although we demonstrated that the PreS:T synthetic peptide was able to compete in vivo with some of these MalE peptides in conjunction with their relative I-Aq binding capacity. Altogether, our results indicate that in a single protein Ag, the presentation of each determinant occurs independently of the others.
These experiments were performed by immunizing mice for a given T cell determinant with the same molarity of either the protein or the synthetic peptides. One explanation for the discrepancies we observed would be that synthetic peptides enable the saturation of available class II binding sites, whereas chimeric protein-derived peptides do not. Conversely, the half-life of a protein Ag in the animal body is much higher than the half-life of a 15-mer synthetic peptide. In both cases, therefore, it is difficult to determine whether we reached saturating conditions for the available class II molecules, but following a local immunization, one might expect that the Ag dosage required to saturate APC in the vicinity of the injection site can be achieved without a very large amount of Ag.
There is growing evidence that synthetic peptides may not totally mimic physiologically processed peptides, which may therefore explain the discrepancies between the results we obtained using synthetic peptides and those obtained with chimeric proteins.
First, it is now well established that a given antigenic T cell determinant is displayed by MHC molecules as a set of peptides extended at either end of the core sequence (36, 37). Therefore, features belonging to a particular synthetic peptide may not represent the heterogeneity of the naturally processed peptides. Second, free peptides may not activate the same T cell repertoire than intracellularly derived peptides (38, 39). For instance, Viner et al. (39) have shown that the same peptide/MHC complex, HEL peptide 4762 bound to I-Ak, stimulated a particular set of T cell hybridomas when this complex was formed using extracellularly added free peptide but not when it was formed following intracellular processing. To explain these results, it was proposed that the peptide accommodation in the MHC-binding groove may vary depending on parameters linked to the local environment of MHC molecules at the time of peptide acquisition, such as the pH level or the presence of Ii or HLA-DM/H-2 M as accessory molecules. Indeed, APC fed with synthetic free peptides do not complex nascent class II molecules, since these peptides are mainly available for MHC binding at the cell surface or in recycling vesicles, and they accumulate poorly in intracellular compartments (40). Therefore, our data reveal that the competition process observed in vivo between MalE and PreS:T synthetic peptides is ineffective when these peptides are carried by chimeric MalE-PreS:T proteins, probably because of intracellular Ag processing steps required for presentation of these different T cell determinants.
It has also been proposed that the processing steps may be under the control of MHC class II proteins leading to a MHC-guided processing (4). Following internalization, the Ag travels through a pH gradient and a reducing environment in the endocytic pathway. In these conditions, the protein is partially unfolded, displaying more or less its determinant sequences, which may be selected by class II molecules and protected from degradation allowing their further presentation at the cell surface. The molecular basis of this hypothesis relies on: 1) the ability of class II to protect immunogenic peptides from in vitro proteolytic degradation (41, 42); and 2) the ability of class II molecules to bind unfolded protein Ags (43, 44, 45). Through this mechanism, it is expected that the capture of antigenic determinants is driven by their affinity for MHC molecules and is thus subjected to competition, unless they are still buried within the antigenic molecule in a partially unfolded state.
Based on the structural features of the MalE protein, the MalE-PreS:T proteins should be favorable for such a determinant capture process. First, the permissive insertion sites into MalE correspond to regions of the protein that are not involved in its folding (46, 47) and are surface exposed so that the peptide insertions do not disturb the overall structure of MalE. The exposition of an inserted peptide at site 133 of MalE was confirmed recently by the crystal structure of such chimeric proteins (48). Second, replacing the determinant core sequences on the MalE 3D-structure (49), the six determinants are also surface exposed on the molecule. Therefore, despite the fact that either the PreS:T insert or the MalE T cell determinants are apparently easily available on the intact molecule for binding to I-Aq molecules, we did not detect any competition between these determinants that might result from determinant capture.
In vivo evidence for a class II-mediated determinant selection was provided by Deng et al. (50) in the HEL system. This study shows that in F1(NOD x BALB/c) mice, the response to the 95102 determinant of HEL (restricted by I-ANOD) was subjugated by the closely located 108116 determinant (restricted by I-Ed). The disruption of the peptidic bond into the HEL protein between these two determinants using cyanogen bromide was able to restore the response to the 95102 determinant. Interestingly, this competition process arises between two closely located binding sequences, since these determinant cores are separated by only six residues. The 95102 and 108116 HEL determinants are contained in a short sequence of 22 residues, and therefore, upon strong affinity differences, this neighborhood may force a determinant choice by class II molecules, in agreement with the length of processed peptides bound to class II, which ranges from 13 to 28 residues (37). Thus, the competition for class II presentation is likely to occur at the protein level, but may also occur at the peptide level. Effectively, it was previously demonstrated that competition for binding to class II molecules is likely to occur within a single peptide containing two synthetically linked epitopes (51, 52, 53). Furthermore, the cyanogen bromide cleavage of HEL breaks the continuity of the HEL sequence, but the two determinants still belong to the same molecule, since the four disulfide bonds maintain the integrity of the HEL molecule. Therefore, this strongly suggests that the competition for MHC presentation between T cell determinants within a single molecule does not take place at long distance along the molecule. In MalE-PreS:T chimeric proteins, the potential PreS:T competitor peptide is separated from the nearest MalE core determinant by 12 and 24 residues at site 133 and 303, respectively, without inducing any competition. This feature strengthens the idea that if competition happens, it only occurs between very closely linked binding sequences.
Another aspect pointed out by recent studies concerns the possibility that some determinants are presented by nascent class II in an Ii- and HLA-DM-dependent manner, whereas others are presented by mature class II in recycling vesicles (44, 54, 55, 56, 57). In a single protein Ag, it is expected that the different T cell determinants that will be presented by class II molecules require more or less catabolic activity to be generated. Thus, during the intracellular trafficking of the Ag, there might be a compartment-associated processing in which some determinants will be available for class II in early endocytic vesicles (55), whereas others will be generated in late endocytic vesicles (54) depending upon the acidification level and the protease content of the local environment. Moreover, some determinants that are very sensitive to proteolysis may be available only in early endosomes, since they may be degraded in later endocytic compartments. Therefore, the model of Ag processing so-proposed will be that distinct T cell determinants carried by the same protein Ag will be produced in distinct compartments through the endosomal/lysosomal route (58).
We have some pieces of information concerning the processing requirements of the PreS:T insert, but not for the presentation of MalE determinants. Indeed, the stimulation of the PreS:T-specific T cell hybridomas by APC pulsed with MalE-PreS:T proteins is chloroquine sensitive and cycloheximide sensitive (data not shown), demonstrating that the presentation of the PreS:T insert requires intracellular processing and newly synthesized class II molecules, which suggests a late processing compartment. If the MalE determinants are produced earlier in the endocytic route, they may not compete with the PreS:T peptide. This possibility cannot be totally excluded, although it would be surprising to find that all six of the MalE determinants were processed in a compartment different from the one used for the PreS:T insert. If this were true, however, a competition could still occur between the MalE determinants, and the retrieval of determinant sequences in deleted MalE proteins would lead to a noticeable modification of the presentation of the remaining determinants. However, this was not the case. Therefore, the lack of competition we observed cannot be explained merely by the fact that the different determinants may be generated in distinct endocytic compartments.
It was recently shown in the HEL system that feeding APC with an excess of antigenic molecules led to the internalization of a small fraction of Ag (0.3%), and that finally only 1 of 750 internalized HEL molecules was converted into the dominant 4862 peptide/I-Ak complex (59). This poor presentation efficiency suggests that if there is peptide competition, this occurs most likely with self protein-derived peptides rather than with other antigenic peptides located in the same molecule. Therefore, parameters other than intramolecular peptide competition for MHC bindingsuch as the yield of processed peptides or the ability of these peptides to replace endogenous self peptides (including class II-associated Ii chain peptide (CLIP)) to load and stabilize MHC moleculesmay be much more important for peptide presentation.
The results presented in this study indicate that peptides that arise from the intracellular processing of chimeric MalE-PreS:T proteins do not compete for MHC binding and presentation by APC, whereas they are able to compete, either in vitro or in vivo, when given to APC as exogenous free synthetic peptides. Therefore, these results demonstrate that competition between peptides belonging to the same antigenic molecule for MHC binding may not represent an important parameter in the selection of peptides that can be presented to T lymphocytes.
| Acknowledgments |
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| Footnotes |
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2 Address correspondence and reprint requests to Dr. Richard Lo-Man, Institut Pasteur, 25 rue du Docteur Roux 75724 Paris cédex 15, France. E-mail address: ![]()
3 Abbreviations used in this paper: HBsAg, hepatitis B surface Ag; LNC, lymph node cells; IC50, 50% inhibition of maximal stimulation; HEL, hen egg lysozyme; [3H] incorporation, [3H]thymidine incorporation. ![]()
Received for publication August 4, 1997. Accepted for publication October 31, 1997.
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