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The Journal of Immunology, 1998, 160: 810-819.
Copyright © 1998 by The American Association of Immunologists

Nuclear Targeted Suppression of NF-{kappa}B Activity by the Novel Quinone Derivative E33301

Masaki Hiramoto*, Noriaki Shimizu*, Kotaro Sugimoto*, Jianwei Tang*, Yutaka Kawakami{dagger}, Masaharu Ito{dagger}, Shin Aizawa{ddagger}, Hirotoshi Tanaka§, Isao Makino§ and Hiroshi Handa2,*

* Faculty of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama; {dagger} Department of Clinical Development Section, Eisai Co., Ltd., Tokyo; {ddagger} Department of Anatomy, Nihon University School of Medicine, Tokyo; and § Second Department of Internal Medicine, Asahikawa Medical College, Asahikawa, Japan


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
The activation of NF-{kappa}B consists of at least three steps: degradation of I{kappa}B{alpha}, translocation of NF-{kappa}B into the nucleus, and post-translational modification of NF-{kappa}B (e.g., phosphorylation of p65). In the present study, we found that a novel quinone derivative E3330 selectively inhibited NF-{kappa}B-mediated gene expression without affecting any of these steps. E3330, when included in the culture medium, suppressed NF-{kappa}B DNA-binding activity in PMA-induced Jurkat cell nuclear extracts, suggesting that the inhibition by E3330 of NF-{kappa}B-mediated gene expression was due to its ability to suppress NF-{kappa}B DNA-binding activity. Fractionation of the nuclear extracts by column chromatography revealed that a nuclear factor enhanced NF-{kappa}B DNA-binding activity and that this enhancing activity was interrupted after treatment with E3330. Moreover, a major polypeptide with a molecular mass of 40 kDa was found to be in the highly purified fraction containing the NF-{kappa}B-enhancing activity and predominantly bind E3330. Taken together, these results suggest that the NF-{kappa}B activity, after dissociation from I{kappa}B, is enhanced by a nuclear factor that is active irrespective of PMA treatment, and the nuclear factor-mediated enhancement is selectively inhibited by E3330. Thus, we conclude that E3330 may belong to a novel class of anti-NF-{kappa}B drugs.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
The transcription factor NF-{kappa}B was originally described as a heterodimer complex composed of p50 and p65 subunits (1, 2), but it is now known that three other proteins, namely p52, c-Rel, and Rel B, can also participate in dimer formation. All of these proteins are related by a stretch of approximately 300 amino acids that is homologous to the c-rel oncogene and to the Drosophila morphogen dorsal (3, 4, 5, 6, 7, 8, 9, 10). DNA-binding dimers can be homodimers (except for Rel B) and almost all possible heterodimers (3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14). Transcriptional activation is chiefly due to p65, c-Rel, and Rel B (15, 16, 17, 18), although under certain conditions p50 homodimers can also transactivate (19).

Inducible NF-{kappa}B is part of a signal transduction pathway, and its activity seems to be regulated primarily at the post-translational level. In most cells, NF-{kappa}B is present in the cytoplasm in an inactive form, complexed to an anchoring protein, I{kappa}B.3 Stimulation of cells with a variety of agents, including PMA, cytokines such as TNF-{alpha} and IL-1{alpha}, and oxidants and UV irradiation, leads to activation and translocation of NF-{kappa}B into the nucleus (reviewed in Refs. 20–22). During activation, NF-{kappa}B is released from I{kappa}B through the phosphorylation and degradation of I{kappa}B (23, 24). Although the dissociation step has been extensively studied, very little is known about how NF-{kappa}B is activated after dissociation from I{kappa}B. Phosphorylation of NF-{kappa}B has recently been suggested to be involved in NF-{kappa}B activation, because phosphorylation of the p65 subunit of NF-{kappa}B increases its DNA-binding activity (25). Redox regulation is another mode of regulation of NF-{kappa}B activity; oxidation of NF-{kappa}B subunits in vitro abolishes their DNA-binding activity (26, 27, 28). However, the physiologic significance of these findings still remains obscure. On the other hand, several studies have indicated the presence of cofactor-like activities for NF-{kappa}B, such as HMG I(Y), Bcl-3, and PC1 (29, 30, 31, 32, 33). The functional and physical associations of NF-{kappa}B with other factors are also considered to be important for the regulation of the NF-{kappa}B activity (34, 35, 36, 37).

The putative cellular target genes of NF-{kappa}B are mainly involved in inflammatory responses, immune and acute phase responses, lymphocyte activation, and cell growth and differentiation (20). These genes encode cell surface molecules such as IL-2R{alpha} and MHC class I, a number of cytokines including IL-2, IL-6, G-CSF, IFN-ß, and TNF-{alpha}, and cell adhesion molecules such as E-selectin, ICAM-1, and VCAM-1. Moreover, NF-{kappa}B is a critical transcription factor in regulating the replication of HIV-1. Selective inhibition of NF-{kappa}B, therefore, may provide a rational approach for the treatment of a variety of human diseases. Various reagents have already been proven effective in inhibiting NF-{kappa}B-inducible gene expression, and these reagents may be classified into antioxidants and radical scavengers, protease inhibitors, and proteosome inhibitors. For example, a potent antioxidant, pyrrolidinedithiocarbamate, has been shown to inhibit the degradation of I{kappa}B{alpha} and to suppress NF-{kappa}B-inducible gene expression (38, 39). This was also the case for sodium salicylate and aspirin (40). Similar results were obtained when the protease inhibitors tosylphenylalanine-chloromethyl ketone or tosyllysine-chloromethyl ketone were used (23, 41). At this moment, however, no reagents that suppress either nuclear translocation, phosphorylation, or the transactivating activity of dissociated NF-{kappa}B have been reported.

A novel quinone derivative, E3330 ((2E)-3-[5-(2,3-dimethoxy-6-methyl-1,4-benzoquinoyl)]-2-nonyl-2-propenoic acid), was reported to inhibit LPS-induced TNF-{alpha} generation in human monocytes, rat-resident and Propionibacterium-elicited peritoneal macrophages, and rat Kupffer cells and spleen macrophages (42). E3330 was also found to have a therapeutic effect in mice with endotoxin-mediated hepatitis and in rats with galactosamine-induced hepatitis, presumably as a result of E3330 inhibition of TNF-{alpha} generation (43, 44). Northern blot analysis indicated that the inhibitory effect of E3330 on TNF-{alpha} generation is due to inhibition of mRNA biosynthesis and/or destabilization of mRNA. Because the gene expression of TNF-{alpha} is known to be regulated by NF-{kappa}B (45, 46), these results suggest that E3330 might suppress the transactivation function of NF-{kappa}B.

In the present study, we have examined the suppressive effect of E3330 on NF-{kappa}B-mediated gene expression in PMA-induced Jurkat cells. We show that E3330 inhibits NF-{kappa}B DNA binding, most probably via an interaction with a nuclear factor that activates NF-{kappa}B activity.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Cell culture and reagents

Jurkat cells (TIB152; American Type Culture Collection, Rockville, MD), a human T cell line, were grown in RPMI 1640 (Life Technologies, Grand Island, NY) supplemented with 10% FCS (Moregate, Melbourne, Australia). PMA, PHA, and A23187 were purchased from Sigma Chemical Co. (St. Louis, MO). TNF-{alpha} was purchased from Genzyme (Cambridge, MA). IFN-{alpha} was purchased from Fujisaki Institute (Okayama, Japan) and IFN-{gamma} from Cellular Products Inc. (Buffalo, NY). E3330 and [14C]E3330, obtained from Eisai (Tsukuba, Japan), was dissolved in 100% ethanol at a concentration of 25 to 100 mM and added to culture medium at a final concentration of 25 to 100 µM. The final concentration of ethanol in each culture medium was 0.1% irrespective of the concentration of E3330.

Construction of reporter plasmids

Luciferase reporter plasmids were constructed containing the luciferase gene under the control of promoters containing the recognition sites for NF-{kappa}B, Sp1, Oct, and AP-1. Oligonucleotides corresponding to the recognition site of each of these factors were synthesized using a DNA synthesizer (Applied Biosystems, Inc., Foster City, CA). The sequences of these oligonucleotides were as follows: 5'-AAGGGACTTTCCGCTGGGGATTCCAG-3' (NF-{kappa}B), 5'-GGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCT-3' (Sp1), 5'-TTGGGTAATTTGCATTTCTAAGAGCT-3' (Oct), 5'-CAGGTGTCTGACTCATGCTTTTTTAAGCT-3' (AP-1). The oligonucleotides were annealed to their complementary oligonucleotides and ligated in tandem. After having been blunt-ended, the tandemly ligated NF-{kappa}B oligonucleotide was inserted into the blunt-ended SacI site of pUC119 and sequenced. The tandemly ligated Sp1 and AP-1 oligonucleotides were directly cloned into the SacI site in the polylinker site of pUC119 and were then sequenced. After having been blunt-ended, the tandemly ligated Oct oligonucleotide was inserted into the SmaI site of pUC119 and sequenced.

The DNA fragment encompassing the HIV-1 sequence from -45 to +83, which contains the TATA box and the transcription start site of the viral genome, was amplified by PCR. The 5' and 3' primers, which contained the EcoRI and HindIII sites, respectively, were synthesized and used to amplify the HIV-1 DNA fragment by PCR. The EcoRI-HindIII fragment was inserted into the EcoRI-HindIII site of pUC119, and sequenced.

To construct reporter plasmids in which the expression of the luciferase gene is under the control of the indicated transcription factors, DNA fragments containing four copies of the NF-{kappa}B site, six copies of the Sp1 site, or five copies of the AP-1 site were prepared by digestion with KpnI and EcoRI. Each of these fragments, along with the HIV-1 DNA fragment containing terminal EcoRI and HindIII sites, was inserted into the KpnI-HindIII sites of PGV-B (Toyo Ink Mfg. Co., Ltd., Tokyo, Japan) containing the luciferase gene to construct pNFkBHL, pSp1HL, and pAP1HL. The DNA fragment containing five copies of the Oct site with terminal HincII and EcoRI sites was inserted into the SmaI-HindIII sites of PGV-B, along with the HIV-1 DNA fragment with terminal EcoRI and HindIII sites to construct pOctHL.

To construct reporter plasmids in which the expression of the reporter gene is under the control of NFAT, GAS, or ISRE, oligonucleotides containing three copies of recognition site of these factors were synthesized. The sequences of these oligonucleotides were as follows: 5'-CGAGGAAAAACTGTTTCATAGAGGAAAAACTGTTTCATAGAGGAAAAACTGTTTCATAG-3' (NFAT), 5'-CGCTTTCCCGGAAATAGCTTTCCCGGAAATAGCTTTCCCGGAAATAG-3' (GAS), 5'-CGCAGTTTCACTTTCCCTAGCAGTTTCACTTTCCCTAGCAGTTTCACTTTCCCTAG-3' (ISRE). The oligonucleotides were annealed to their complementary oligonucleotides, resulting in production of the dsDNA fragments containing three copies of each recognition site with the KpnI and EcoRI sites at the ends. Each of these fragments, along with the HIV-1 DNA fragment containing terminal EcoRI and HindIII sites, was inserted into the KpnI-HindIII sites of PGV-B to construct pNFATHL, pGASHL, and pISREHL.

To construct pHIV-Luc and pHIV({Delta}kB)-Luc, the DNA fragment encompassing the HIV sequence from -670 to +83 was prepared from pCD12 (47) by digestion with HindIII. The fragment was inserted into the HindIII site of PGV-B to construct pHIV-Luc. To delete the NF-{kappa}B site from the HIV promoter, two DNA fragments encompassing the HIV sequences from -646 to -107 and from -80 to +29 were amplified by PCR. These fragments contained the XhoI and EcoRI sites and the EcoRI and BglII sites, respectively. After digestion with restriction enzymes, two DNA fragments were inserted into the XhoI-BglII sites of pHIV-Luc to construct pHIV({Delta}kB)-Luc.

Preparation of nuclear extracts and electrophoretic mobility shift assay (EMSA)

Nuclear extracts were prepared from Jurkat cells as described previously (48, 49). In brief, Jurkat cells were washed with PBS and resuspended in 4 packed cell volumes of a hypotonic lysis buffer (buffer A: 10 mM HEPES, pH 7.9, 1.5 mM MgCl2, 10 mM KCl, 0.5 mM DTT). After 20 min, cells were homogenized by 20 strokes with a loose-fitting Dounce homogenizer and then centrifuged for 6 min at 4,300 x g to separate the nuclei from the cytoplasmic fraction. Collected nuclei were washed with 5 packed cell volumes of buffer A. Washed nuclei were suspended in 1 packed cell volume of high salt buffer C (20 mM HEPES, pH 7.9, 25% (v/v) glycerol, 0.42 M NaCl, 1.5 mM MgCl2, 0.2 mM EDTA, 0.5 mM PMSF, 0.5 mM DTT) and homogenized again by 10 strokes of a loose-fitting Dounce homogenizer. The homogenate was incubated for 30 min at 4°C to extract protein from nuclei, then centrifuged for 30 min at 15,000 x g. The supernatant was dialyzed against buffer D (20 mM HEPES, pH 7.9, 20% (v/v) glycerol, 0.1 M KCl, 0.2 mM EDTA, 0.5 mM PMSF, 0.5 mM DTT) for 5 h at 4°C, and centrifuged for 20 min at 15,000 x g. The supernatant was quick-frozen in liquid nitrogen and stored at -80°C; it was used for experiments requiring nuclear extracts.

The cytoplasmic fraction was ultracentrifuged for 1 h at 150,000 x g. The supernatant was dialyzed against buffer D for 5 h at 4°C, then centrifuged for 20 min at 15,000 x g. The supernatant, quick-frozen in liquid nitrogen and stored at -80°C, was used for experiments requiring cytosolic fraction.

The DNA probes for EMSA were prepared as follows. The annealed oligonucleotides described above, containing two NF-{kappa}B sites, three Sp1 sites, and one Oct site, were cloned into the polylinker site of pUC119 and excised with EcoRI and HindIII. These fragments were end labeled with the Klenow fragment and [{alpha}-32P]dATP and purified by agarose gel electrophoresis. The binding reactions (10 µl) contained 4 µg of nuclear extracts, 1 ng of the indicated DNA probe, 2 µg of poly(dI-dC), 0.5 µg of ssDNA, and 20 µg of BSA in binding buffer (20 mM HEPES, pH 7.9, 12% (v/v) glycerol, 0.1 M KCl, 0.2 mM EDTA). Reactions were initiated by the addition of nuclear extracts and incubated at 30°C for 30 min before electrophoresis. Samples were analyzed on native 4% polyacrylamide gels. Gels were dried and autoradiographed. The Abs, specific for p65, p50, I{kappa}B{alpha} or Bcl-3, were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). When E3330 was used in EMSA, it was diluted into deionized water from concentrated solutions in 100% ethanol and used at a final concentration of 1 to 100 µM in the binding buffer. The final concentration of ethanol in each binding reaction was 1% irrespective of the concentration of E3330.

Transfections and luciferase assays

Transfections were performed by the electroporation method. Jurkat cells (1.25 x 107) were washed with RPMI 1640 and resuspended in 625 µl of RPMI 1640 containing 12.5 µg of reporter plasmid DNA. Electroporations were performed under conditions of 960 µF and 200 V using a Gene Pulser and a Gene Pulser Cuvette with 0.4 cm electrode gap (Bio-Rad, Hercules, CA). The cells were cultured in RPMI 1640 containing 10% FCS for 12 h. The cells were then centrifuged, divided into five 6-cm dishes, and incubated for 12 h before treatment with E3330. Two hours after E3330 treatment, the cells were treated with PMA. Cell extracts were prepared 12 h after treatment with PMA, and luciferase activities were measured using the Pica Gene detection kit (Toyo Ink Mfg.) and Lumat LB9501 (Berthold Japan K.K., Tokyo, Japan).

Immunoblotting

Nuclear extracts and cytosol fractions were prepared from Jurkat cells as described previously (50), with a minor modification. In brief, washed cells were resuspended in 400 µl of cold buffer A' (10 mM HEPES, pH 7.9; 10 mM KCl; 0.1 mM EDTA; 0.1 mM EGTA; 1 mM DTT; 0.5 mM PMSF). The cells were allowed to swell on ice for 15 min, then 25 µl of a 10% solution of Nonidet P-40 was added, and the mixture was briefly vortexed for 10 s. The homogenate was centrifuged for 30 s in a microfuge. The supernatant containing the cytoplasmic fraction was transferred into a fresh tube and centrifuged again at 100,000 x g for 1 h, and the supernatant was used as cytosol. Cell disruption was confirmed by microscopic observation. The nuclear pellet was resuspended in 50 µl of ice-cold buffer C' (20 mM HEPES, pH 7.9, 0.4 M NaCl, 1 mM EDTA, 1 mM EGTA, 1 mM DTT, 1 mM PMSF) and gently vortexed at 4°C for 15 min. After centrifugation for 15 min at 4°C in a microfuge, the supernatant was recovered and used as nuclear extract. Nuclear extracts (1 µg) and the cytoplasmic fraction (6 µg) were fractionated by SDS-PAGE and electrotransferred to polyvinylidene difluoride (PVDF) membrane (Millipore, Bedford, MA). The membrane was incubated with 5% nonfat milk overnight and incubated with polyclonal Ab against I{kappa}B{alpha} or p65 (Santa Cruz Biotechnology) for 2 h, then analyzed using the Amersham enhanced chemiluminescense system (ECL; Amersham, Buckinghamshire, U.K.).

In vivo phosphate labeling and immunoprecipitation

Jurkat cells (107 cells) were washed once with phosphate-free RPMI 1640 and incubated for 2 h with 1 ml of phosphate-free RPMI 1640 in the presence or absence of E3330. The cells were then labeled with 1 mCi/ml [32P]H3PO4 (Amersham, Buckinghamshire, U.K.) for 30 min in the presence or absence of PMA. After labeling, the cells were washed with PBS and lysed in 1 ml of ice-cold RIPA buffer (50 mM Tris-HCl, pH 8.0, 150 mM NaCl, 1.0% Nonidet P-40, 0.5% deoxycholic acid, 0.1% SDS, 50 mM NaF, 10 mM Na3VO4) for 30 min on ice with occasional mixing. The lysates were centrifuged in a microcentrifuge for 20 min, and the supernatants were subsequently incubated with anti-p65 Ab coupled to protein A-Sepharose (1:1) (Pharmacia, Uppsala, Sweden) for 1 h at 4°C. The precipitated proteins, coupled to protein A beads, were washed three times with 1 ml of ice-cold RIPA buffer, boiled, and centrifuged. The supernatants were fractionated by SDS-PAGE. The gel was dried and exposed to an x-ray film (Kodak, Rochester, NY).

Two-dimensional phosphopeptide mapping

Two-dimensional phosphopeptide mapping was performed as described previously (51). The p65 band was identified by aligning the exposure with the gel. The band was cut out from the gel, and labeled p65 was eluted twice in 0.6 ml of elution buffer (50 mM NH4HCO3, 0.1% SDS, and 0.5% 2-ME). The eluted proteins were pooled and precipitated in the presence of 10 µg of BSA and 20% TCA. The proteins were then oxidized in the presence of performic acid, diluted in deionized water, frozen, and lyophilized. The pellets were resuspended in 50 µl of NH4HCO3 (pH 8.0), added with 10 µg of N-tosyl-L-phenylalanine chloromethyl ketone-treated trypsin, and incubated for 4 h at 37°C. Deionized water was added to the digests, frozen, and lyophilized. The pellet was dissolved in 400 µl of electrophoresis buffer (pH 1.9) and centrifuged. The supernatant was lyophilized. The pellet was resuspended in 10 µl of electrophoresis buffer (pH 1.9), centrifuged, and spotted on TLC plates. The first dimension was done by migrating the tryptic digests on a TLC plate in pH 1.9 electrophoresis buffer (formic acid, 25 ml; glacial acetic acid, 78 ml; deionized water, 897 ml). The second dimension was chromatographed using isobutyric acid buffer (isobutyric acid, 625 ml; n-butanol, 19 ml; pyridine, 48 ml; glacial acetic acid, 29 ml; deionized water, 279 ml). TLC plates were exposed to x-ray films for visualization.

Uptake and intracellular binding of [14C]E3330

Uptake and cellular distribution of E3330 were examined by incubating 8 x 107 Jurkat cells in 20 ml of complete media (RPMI 1640 + 10% FCS) containing 50 µM [14C]E3330 for 1 h. Jurkat cells were then washed twice with PBS and resuspended in 1 ml of buffer containing 20 mM Tris-HCl (pH 7.5) and 1 mM MgCl2. After 10 min at 4°C, the cell suspension was rapidly forced through a 25-gauge needle three times to disrupt the cells. A crude nuclear pellet was obtained by centrifugation at 2,000 x g for 10 min. The supernatant was centrifuged at 100,000 x g for 60 min in a Beckman TLA 100.3 ultracentrifuge (Beckman, Fullerton, CA) to separate the crude plasma membrane pellet from cytosol. The nuclear and membrane fractions were suspended in 1 ml of distilled water and homogenized by sonication. Aliquots (5, 25, and 125 µl) of each subcellular fraction were mixed with 10 ml of Aquasol (New England Nuclear, Boston, MA), and radioactivity was counted in a Beckman LS-9000 liquid scintillation counter.

Column chromatography

Nuclear extracts (4.5 ml) prepared from PMA-induced Jurkat cells were loaded onto a phosphocellulose (P11) column, and bound proteins were eluted stepwise with buffer D (containing 0.3 M, 0.5 M, and 1.0 M KCl). Each fraction (20 ml) was dialyzed against HGKE buffer (20 mM HEPES-NaOH (pH 7.9), 20% glycerol, 0.1 M KCl, and 0.2 mM EDTA). The protein concentrations of nuclear extracts, and of 0.1 M, 0.3 M, 0.5 M, and 1.0 M KCl fractions were 5.3, 0.34, 0.26, 0.17, and 0.09 mg/ml, respectively. The majority of NF-{kappa}B was recovered in the 0.3 M KCl fraction, although a small amount of NF-{kappa}B was eluted in the 0.1-M KCl fraction. The dialyzed 0.5-M KCl fraction was further loaded onto a DEAE Sepharose column. The flow-through fraction, which contained most of the NF-{kappa}B-enhancing activity, was applied directly onto a Mono S column and eluted using a linear gradient of 0.1 to 1.0 M KCl in buffer D. The peak fractions (0.6 to 0.8 M KCl) were pooled, loaded again onto a Mono S column (Pharmacia) after dilution with buffer D without KCl, and then eluted with 1.0 M KCl to concentrate the activity. The eluate was loaded on a Superdex 75 column (Pharmacia) and fractionated by running buffer D. The peak fractions were pooled and loaded again onto a Mono S column to concentrate the activity, as described above for E3330 ligand-western.

To test the NF-{kappa}B-enhancing activity, each fraction after dialysis against HGKE buffer was mixed with the 0.3 M KCl fraction and incubated together with 10 µg of BSA at 37°C for 1 h in the presence or absence of 10 to 100 µM E3330. After a further addition of 1 µg of poly(dI-dC) and 1 ng of the indicated DNA probe, the mixture was incubated at 25°C for 20 min, and protein-DNA complexes were resolved on 4% polyacrylamide gels. The gel was dried and autoradiographed.

E3330 ligand-western

The fraction finally concentrated by Mono S column chromatography was resolved by SDS-PAGE and analyzed either by silver staining or E3330 ligand-western. Proteins fractionated by SDS-PAGE were electrotransferred to PVDF membrane. The protein blot was denatured and renatured by sequential treatment with buffer D' (20 mM HEPES, pH 7.9, 10% (v/v) glycerol, 0.1 M KCl, 0.2 mM EDTA, 0.5 mM PMSF, 0.5 mM DTT) containing 0.01% Nonidet P-40 and 6 M guanidine-HCl for 15 min at room temperature; buffer D' containing 0.01% Nonidet P-40 and 4 M guanidine-HCl for 15 min at 4°C; buffer D' containing 0.01% Nonidet P-40 and 2 M guanidine-HCl for 15 min at 4°C; buffer D' containing 0.01% Nonidet P-40 and 1 M guanidine-HCl for 15 min at 4°C; buffer D' containing 0.01% Nonidet P-40 and 0.5 M guanidine-HCl for 15 min at 4°C; buffer D' containing 0.01% Nonidet P-40 and 0.25 M guanidine-HCl for 15 min at 4°C; buffer D' containing 0.01% Nonidet P-40 and 0.125 M guanidine-HCl for 15 min at 4°C; and buffer D' containing 0.01% Nonidet P-40 for 15 min at 4°C three times. The blot was incubated with buffer D' containing 0.01% Nonidet P-40 and [14C]E3330 for 12 h at 4°C and then washed four times with buffer D' containing 0.01% Nonidet P-40 for 10 min at 4°C, dried, and autoradiographed.


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Effect of E3330 on the transcriptional activity of NF-{kappa}B

To test for an inhibitory effect of E3330 on NF-{kappa}B-mediated gene expression, we transfected Jurkat cells with the pNFkBHL reporter plasmid in which the expression of the luciferase gene is driven by NF-{kappa}B. After transfection, the cells were treated with the indicated concentrations of E3330 for 2 h and induced for 12 h with either PMA, PMA plus A23187, PMA plus PHA, or TNF-{alpha}, and then luciferase activity was measured (Fig. 1GoA). Among the inducers of NF-{kappa}B that we tested, combined treatment with PMA and A23187 gave the strongest stimulation of NF-{kappa}B-mediated expression of the reporter gene (Fig. 1GoA). However, irrespective of the stimuli, E3330 clearly suppressed NF-{kappa}B-mediated transcription stimulation in a dose-dependent manner (Fig. 1GoA).



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FIGURE 1. The effect of E3330 on gene expression. A, The effect of E3330 on NF-{kappa}B-mediated transcription stimulation by various inducers. Jurkat cells were transfected with luciferase reporter plasmid DNA, the expression of which was under the control of NF-{kappa}B. Twelve hours after transfection, the cells were equally divided into five dishes. After another 12 h, three dishes were treated with the indicated amounts of E3330 (column 3, 25 µM; column 4, 50 µM; column 5, 100 µM) for 2 h. Four dishes, including the E3330-treated dishes, were then treated with either PMA (50 ng/ml), PMA (50 ng/ml) plus A23187 (0.5 µM), PMA (50 ng/ml) plus PHA (2.5 µg/ml), or TNF-{alpha} (20 ng/ml) and incubated for an additional 12 h. Cell extracts were then prepared, and the luciferase activities were measured. The luciferase activities of induced cell extracts (columns 2–5) were compared with those of untreated cell extracts (column 1), and the ratio was calculated. The results are representative of at least three independent transfection experiments. B, The effect of E3330 on transcription from various promoters. Jurkat cells were transfected with the indicated reporter plasmids. Cells were equally divided into five dishes 12 h after transfection. After another 12 h, the cells were treated with the indicated amounts of E3330 (column 3, 25 µM; column 4, 50 µM; column 5, 100 µM) for 2 h. Then, the cells were treated with 50 ng/ml of PMA (columns 2–5) for an additional 12 h, after which cell extracts were prepared and luciferase activities were measured. The luciferase activities of PMA or PMA/E3330 treated cell extracts (columns 2–5) were compared with those of untreated cell extracts (column 1), and the ratio was calculated for each promoter. The RLU was used as a unit of measure of the raw data of luciferase activities. The values for untreated cell extracts (column 1) from which the background (310 RLU) has been subtracted are as follows: pNFkBHL, 1735 RLU; pSp1HL, 4159 RLU; pOctHL, 992 RLU; pHIV-Luc, 5201 RLU; pHIV({Delta}kB)-Luc, 3005 RLU. The results are representative of at least three independent transfection experiments.

 
We then examined the specificity of E3330 inhibition for NF-{kappa}B-mediated transcription by analyzing the effect of E3330 on the transcription from other promoters containing binding sites for various transcription factors. For this purpose, the indicated reporter plasmid was transfected into Jurkat cells instead of pNFkBHL, and the cells were treated with E3330 and PMA as described in the legend of Figure 1GoB. In contrast to NF-{kappa}B-mediated transcription, the expression of luciferase activity under the control of Sp1 or Oct was not affected by PMA induction, and E3330 had no influence on this expression (Fig. 1GoB). We also examined the inhibitory effect of E3330 on PMA-induced transcription from the HIV promoter by using the pHIV-Luc reporter plasmid. In this case, E3330 suppressed HIV promoter activity in a dose-dependent manner (Fig. 1GoB). Transfection of the cells with pHIV({Delta}kB)-Luc containing a deletion of the NF-{kappa}B elements from the HIV promoter resulted in a loss of both PMA induced expression and suppression by E3330 (Fig. 1GoB).

Furthermore, we examined the effect of E3330 on other inducible systems. Expression of the reporter gene under the control of AP-1 or NFAT was induced by PMA plus A23187, and expression of STAT-mediated reporter plasmids, pGASHL and pISREHL, was induced by IFN-{gamma} and IFN-{alpha}, respectively. Figure 2Go shows that E3330 did not suppress but rather stimulated the AP-1-mediated gene expression. The stimulation was not effective, but highly reproducible. Although E3330 had a slightly suppressive effect on the NFAT- or STAT-mediated gene expression, the suppression was not effective as compared with that of NF-{kappa}B-mediated gene expression (Fig. 2Go). Thus, the results indicates that E3330 is a selective inhibitor of NF-{kappa}B-mediated stimulation of transcription.



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FIGURE 2. The effect of E3330 on transcription from other inducible promoters. Jurkat cells were transfected with the indicated reporter plasmids. Cells were equally divided into four dishes 12 h after transfection. After another 12 h, the cells were treated with the indicated amounts of E3330 (column 3, 25 µM; column 4, 75 µM) for 2 h. Then, the cells were treated with either PMA (50 ng/ml) plus A23187 (0.5 µM), IFN-{gamma} (100 U/ml), or IFN-{alpha} (1000 U/ml) for an additional 12 h, after which cell extracts were prepared and luciferase activities were measured. The luciferase activities of induced cell extracts (columns 2–4) were compared with those of untreated cell extracts (column 1), and the ratio was calculated for each promoter. The values for untreated cell extracts (column 1) from which the background has been subtracted are as follows: pNFkBHL, 2001 RLU; pAP1HL, 1044 RLU; pNFATHL, 1907 RLU; pGASHL, 1055 RLU; pISREHL, 3916 RLU. The results are representative of at least three independent transfection experiments.

 
E3330 neither influences the degradation of I{kappa}B{alpha} nor the nuclear translocation of p65

The cytoplasmic inactive NF-{kappa}B complex is known to be initially activated via phosphorylation and degradation of I{kappa}B{alpha}, followed by nuclear translocation of the active NF-{kappa}B complex composed of p65 and p50 subunits. To see whether E3330 has any influence on these processes, the protein levels of both cytosolic I{kappa}B{alpha} and nuclear p65 were monitored by Western blotting. As shown in Figure 3Go, treatment of Jurkat cells with PMA resulted in a rapid disappearance of I{kappa}B{alpha} in the cytosolic fraction and reciprocal accumulation of p65 in the nucleus. The addition of E3330 did not apparently affect either the PMA-dependent disappearance of I{kappa}B{alpha} or the nuclear accumulation of p65 (Fig. 3Go), indicating that E3330 neither affects the degradation of I{kappa}B{alpha} nor the nuclear translocation of NF-{kappa}B. These results also suggest that E3330 does not inhibit I{kappa}B{alpha} phosphorylation, since I{kappa}B{alpha} degradation depends on its phosphorylation.



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FIGURE 3. The effect of E3330 on I{kappa}B{alpha} degradation in the cytoplasm and on p65 accumulation in the nucleus. Jurkat cells were incubated with 100 µM E3330 (lanes 7–12) or without E3330 (lanes 1–6) for 2 h. This was followed by treatment with 50 ng/ml of PMA (lanes 2–6 and 8–12) or nontreatment (lanes 1 and 7) for the indicated time (lanes 2 and 8, 5 min; lanes 3 and 9, 15 min; lanes 4 and 10, 30 min; lanes 5 and 11, 60 min; lanes 6 and 12, 180 min). Cell extracts were prepared as described in Materials and Methods. Proteins in cytoplasmic fractions and nuclear extracts were fractionated by SDS-PAGE, transferred to PVDF membrane, and immunoblotted with polyclonal Abs against I{kappa}B{alpha} and p65, respectively.

 
I{kappa}B{alpha} reappeared in the cytosolic fraction 60 min after PMA induction irrespective of E3330 treatment. However, the protein levels of I{kappa}B{alpha} in the cells treated with both PMA and E3330 were significantly reduced, compared with levels in the cells treated with PMA alone (Fig. 3Go). This suggested that E3330 does not affect nuclear translocation of the NF-{kappa}B complex, but in some way reduces the subsequent induction of I{kappa}B{alpha} synthesis. To confirm this point, we examined the mRNA levels of I{kappa}B{alpha} using quantitative PCR. Total cellular RNA was prepared from Jurkat cells after treatment with E3330 for 2 h and induction with PMA. After 60 min of PMA induction, the levels of I{kappa}B{alpha} mRNA were reduced in the E3330-treated cells compared with the untreated cells (data not shown). Since expression of I{kappa}B{alpha} is positively regulated by various members of the NF-{kappa}B family (52, 53, 54), these results strongly suggest that E3330 suppresses the transcriptional stimulatory activity of nuclear-translocated NF-{kappa}B, resulting in a reduction in I{kappa}B{alpha} synthesis.

Effect of E3330 on the DNA-binding activity of NF-{kappa}B

To examine the effect of E3330 on the DNA-binding activity of NF-{kappa}B, we performed EMSA using nuclear extracts from Jurkat cells treated with E3330 and induced with PMA. When the cells were treated with PMA, NF-{kappa}B DNA-binding activity was strongly induced (Fig. 4GoA). The treatment with E3330 markedly impaired the induction of the DNA-binding activity of NF-{kappa}B in a dose-dependent manner (Fig. 4GoA). On the other hand, the DNA-binding activity of either Sp1 or Oct was not affected by E3330 treatment (Fig. 4GoA). These protein-DNA complexes, indicated by arrowheads in Figure 4Go, were confirmed to be specific for each transcription factor by competition assays (data not shown). Ab supershift experiments indicated that these protein-DNA complexes contained both p65 and p50 subunits (Fig. 4GoB).



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FIGURE 4. The effect of E3330 on the DNA-binding activity. A, The effect of E3330 on the DNA-binding activities of various transcription factors. Jurkat cells were pretreated for 2 h with the indicated concentrations of E3330 (lanes 3, 8, and 13, 25 µM; lanes 4, 9, and 14, 50 µM; lanes 5, 10, and 15, 100 µM) and then treated with PMA (50 ng/ml) for 30 min. Nuclear extracts were prepared from these treated or untreated cells (lanes 1, 6, and 11), and an equal amount (4 µg) of protein from each sample was analyzed by EMSA using a 32P-labeled DNA probe specific for NF-{kappa}B (lanes 1–5), Sp1 (lanes 6–10), or Oct (lanes 11–15). The arrows and arrowheads indicate the positions of free DNA probes and specific protein-DNA complexes, respectively. B, Characterization of the PMA-induced NF-{kappa}B-DNA complexes using Abs. Jurkat cells were stimulated with PMA (50 ng/ml) for 30 min. Nuclear extracts were prepared and analyzed by EMSA using a 32P-labeled DNA probe specific for NF-{kappa}B. The indicated amount (lanes, 2, 5, and 8, 12.5 ng; lanes 3, 6, and 9, 50 ng; lanes 4, 7, and 10, 200 ng) of the indicated Ab (lanes 2–4, anti-p65; lanes 5–7, anti-p50; lanes 8–10, anti-I{kappa}B{alpha}) was added to the binding reaction.

 
E3330 does not affect the phosphorylation of p65

We next studied the effect of E3330 on the phosphorylation of the p65 subunit of NF-{kappa}B. For this purpose, Jurkat cells were treated with E3330, 32P-labeled orthophosphate was added to the culture medium, and the cells were induced with PMA for 30 min as described in the legend to Figure 5GoA. Then, cell extracts were prepared, and the p65 subunit was immunoprecipitated as described in Materials and Methods. Treatment with PMA significantly increased the accumulation of radioactive phosphate in the p65 subunit (Fig. 5GoA). E3330, however, did not affect the overall phosphorylation level of p65, irrespective of PMA induction. Two-dimensional phosphopeptide mapping further revealed that the pattern of tryptic digestion of the phosphorylated p65 was almost identical, irrespective of E3330 treatment (Fig. 5GoB). This indicates that E3330 does not affect the phosphorylation process of p65.



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FIGURE 5. The effect of E3330 on the phosphorylation of p65. A, The effect of E3330 on in vivo phosphorylation of p65 after induction with PMA. Jurkat cells were washed and incubated with phosphate-free RPMI 1640 in the presence (lanes 3 and 4) or absence (lanes 1 and 2) of E3330 (100 µM) for 2 h. [32P] H3PO4 was then added to the culture medium and the cells were treated (lanes 2 and 3) or untreated (lanes 1 and 4) with PMA (50 ng/ml) for 30 min. Cells were lysed and p65 was immunoprecipitated from the cell lysates using anti-p65 Ab. The immunoprecipitate was fractionated by SDS-PAGE and analyzed by autoradiography. An arrow indicates p65. B, Two-dimensional tryptic phosphopeptide map of p65 isolated from an SDS-polyacrylamide gel. Panels a and b correspond to lanes 2 and 3 in Figure 5GoA, respectively. The p65 band indicated by an arrow was excised from the gel and treated as described in Materials and Methods. Tryptic digests of p65 were analyzed by electrophoresis at pH 1.9 in the horizontal dimension followed by ascending chromatography.

 
Involvement of a nuclear factor, a putative target for E3330, in enhancement of NF-{kappa}B DNA-binding activity and its partial purification

We have shown above that E3330 neither affects the degradation of I{kappa}B{alpha}, the nuclear translocation of p65, nor the phosphorylation of p65. However, we clearly showed that E3330 impairs both the DNA-binding and transcriptional stimulation activities of nuclear-translocated NF-{kappa}B. We hypothesized, therefore, that the presence of some nuclear factor, required for NF-{kappa}B activation, might be functionally targeted by E3330. To investigate for the presence of this cofactor-like activity, we fractionated PMA-stimulated Jurkat cell nuclear extracts by phosphocellulose column chromatography. Each fraction was prepared by stepwise elution with 0.1 M, 0.3 M, 0.5 M, and 1.0 M KCl buffer. Western blot analysis showed that the majority of p65 eluted in the 0.3 M KCl fraction, and that a small amount of p65 eluted in the flow-through fraction (Fig. 6GoA). On the other hand, EMSA using a NF-{kappa}B specific DNA probe showed that NF-{kappa}B DNA-binding activity was present exclusively in the 0.3 M KCl fraction, but the activity was lower than that of the nuclear extracts (Fig. 6GoB). The absence of NF-{kappa}B DNA-binding activity in the flow-through fraction might be due to the presence of I{kappa}B{alpha} in the fraction (data not shown). This hypothesis is supported by a previous report (55) showing that the NF-{kappa}B/I{kappa}B complex was eluted at 0.1 M KCl when HeLa cell cytosolic extracts were fractionated by phosphocellulose column chromatography.



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FIGURE 6. Identification of a factor that enhance NF-{kappa}B DNA-binding activity. Nuclear extracts were prepared from Jurkat cells treated with PMA for 30 min. The extracts were fractionated stepwise by phosphocellulose (P11) column chromatography. A, Each phosphocellulose fraction (nuclear extracts, 0.9 µl; 0.1 M KCl fraction, 4 µl; 0.3 M KCl fraction, 4 µl; 0.5 M KCl fraction, 4 µl; 1.0 M KCl fraction, 4 µl) was immunoblotted with anti-p65 Ab. B, Each fraction (nuclear extracts, 0.9 µl; 0.1 M KCl fraction, 4 µl; 0.3 M KCl fraction, 4 µl; 0.5 M KCl fraction, 4 µl; 1.0 M KCl fraction, 4 µl) was analyzed for NF-{kappa}B DNA-binding activity by EMSA. The arrow and arrowheads indicate the positions of free DNA probe and specific NF-{kappa}B-DNA complexes, respectively. C, The effect of the 0.5 M KCl fraction on the NF-{kappa}B-DNA complex formation was analyzed by EMSA. The 0.5 M KCl fraction (lane 1), the 0.3 M KCl fraction (lanes 2 and 12–15), and a mixture of both (lanes 3–11) containing a constant amount (1 µl) of the 0.3 M KCl fraction and the indicated amounts of the 0.5 M KCl fraction were preincubated at 37°C for 1 h. The DNA probe specific for NF-{kappa}B was then added to the preincubation mixture and incubated at 25°C for 20 min. The indicated amounts of E3330 were added to the reaction during the preincubation (lanes 5–7 and 12–15) or after the preincubation (lanes 8–11). D, The 0.3 M KCl fraction was preincubated at 37°C for 1 h with the increased amounts (lanes 2, 5, and 8, 200 ng; lanes 3, 6, and 9, 400 ng; lanes 4, 7, and 10, 800 ng) of the 0.5 M KCl fraction (lanes 2–4), BSA (lanes 5–7), or the 0.5 M KCl fraction treated at 98°C for 20 min (lanes 8–10). The DNA probe specific for NF-{kappa}B was then added to the preincubation mixture and incubated at 25°C for 20 min.

 
To test the effect of other fractions on the DNA-binding activity of NF-{kappa}B in the 0.3 M KCl fraction, the 0.3 M KCl fraction was mixed with other fractions and incubated together with E3330, as indicated in the legend of Figure 6Go. This study showed that the NF-{kappa}B DNA-binding activity of the 0.3 M KCl fraction was enhanced by the addition of the 0.5 M KCl fraction (Fig. 6GoC). This enhancement, however, was not observed on the addition of BSA or the heat-treated 0.5 M KCl fraction (Fig. 6GoD). Moreover, this enhancement of NF-{kappa}B DNA-binding activity was eliminated by pretreatment of the 0.5 M KCl fraction with E3330 in a dose-dependent manner (Fig. 6GoC, lanes 4–7). In contrast, when E3330 was added after a 1-h incubation of a mixture of the 0.3 M KCl and 0.5 M KCl fractions, E3330 had scarcely any effect on the DNA-binding activity. (Fig. 6GoC, lanes 8–11). The NF-{kappa}B DNA-binding activity in the 0.3 M KCl fraction was not affected by E3330 in the absence of the 0.5 M KCl fraction (Fig. 6GoC, lanes 12–15). The lower two bands resulting from intrinsic binding activity in the 0.3 M KCl and 0.5 M KCl fractions were not affected by E3330 (Fig. 6GoC). These results suggest that E3330 does not affect NF-{kappa}B DNA-binding activity by its direct interaction with NF-{kappa}B.

To test the dependence of the NF-{kappa}B-enhancing activity on PMA induction and its subcellular distribution, we prepared nuclear and cytosolic fractions from PMA-treated or untreated Jurkat cells. All these fractions were further fractionated by phosphocellulose column chromatography, and each fraction were dialyzed against HGKE buffer. EMSA showed that the majority of the NF-{kappa}B-enhancing activity in the 0.5 M KCl fraction was found in the nuclear fraction, irrespective of PMA treatment, suggesting that the enhancing activity was constitutively active in Jurkat cell nuclei (data not shown).

To purify the NF-{kappa}B-enhancing activity in the 0.5 M KCl fraction, we conducted further purification of this fraction by using conventional column chromatography, as described in Materials and Methods. The final fraction concentrated using Mono S column after Superdex 75 column chromatography contained one major polypeptide with a molecular mass of ~40 kDa and several minor polypeptides (Fig. 7GoB). E3330 ligand-western assay, using [14C]E3330, showed that the major polypeptide preferentially bound E3330 (Fig. 7GoB). The final fraction also stimulated the NF-{kappa}B DNA-binding activity; this enhancement was eliminated by pretreatment with E3330 in a dose-dependent manner (Fig. 7GoC). These results suggest that NF-{kappa}B DNA-binding activity is positively regulated via an interaction between NF-{kappa}B and a nuclear factor, and that this interaction is selectively inhibited by binding of E3330 with the nuclear factor. Although it is not yet known that other nuclear factors are involved in the enhancement of NF-{kappa}B activity in addition to the 40-kDa nuclear factor, further analyses are necessary to elucidate this issue.



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FIGURE 7. Purification of the NF-{kappa}B-enhancing activity. A, Purification scheme used for fractionation of NF-{kappa}B-enhancing activity from Jurkat cell nuclear extracts is shown. The numbers shown indicate the concentration of KCl. B, The peak fraction of the fractionation over the Superdex 75 column was concentrated to get a final fraction using Mono S column and analyzed by silver staining or by E3330 ligand-western. Molecular weight markers are shown on the figure. C, The final fraction (lane 7), the 0.3 M KCl fraction of P11 (lane 1), and a mixture of both (lanes 2–6) containing a constant amount (1 µl) of the 0.3 M KCl fraction and the indicated amount of the final fraction were preincubated at 37°C for 1 h. The DNA probe specific for NF-{kappa}B was then added to the preincubation mixture and incubated at 25°C for 20 min. The indicated amounts of E3330 were added to the reaction during the preincubation (lanes 4–6).

 
Subcellular distribution of E3330

To examine the subcellular distribution of E3330, Jurkat cells were incubated with [14C]E3330 for 1 h. The cells were then fractionated into three fractions: nuclei, cytosol, and plasma membrane. Radioactivity in each fraction was counted as described in Materials and Methods. Table IGo shows that >50% of the [14C]E3330 accumulated in the nuclear fraction. The remaining radioactivity was distributed nearly equally between the cytosol and plasma membrane fractions. This result indicates that the subcellular distribution of E3330 was similar to that of the NF-{kappa}B-enhancing activity, supporting our suggestion described above.


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Table I. Subcellular distribution of [14C]E3330 in Jurkat cells

 

    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
NF-{kappa}B has many wide-ranging effects that are controlled by a complex regulatory network of inhibitors and coactivators (20, 21, 22). Given the intimate connection between host defense reactions and NF-{kappa}B, this transcription factor and its associated regulators could provide attractive targets for therapeutic intervention in a number of diseases or pathologic conditions. In this line, a number of anti-NF-{kappa}B drugs have already been developed (23, 38, 39, 40, 41). NF-{kappa}B activity is induced by a variety of reagents including cytokines, UV irradiation, dsRNA, and oxidative stress (20). Although these stimuli modulate distinct intracellular signals (56, 57, 58, 59, 60, 61), all of them have been shown to eventually target I{kappa}B{alpha} through a mechanism involving the following sequence of events: phosphorylation of I{kappa}B{alpha} at Ser32 and Ser36 residues (62, 63, 64), phosphorylation-dependent multiubiquitination of I{kappa}B{alpha} at Lys21 and Lys22 (65, 66, 67), and finally, degradation of I{kappa}B{alpha} by the ubiquitin-dependent proteosome, which results in the release of free NF-{kappa}B (65). Almost all anti-NF-{kappa}B agents, e.g., antioxidants, protease inhibitors, and proteosome inhibitors, target the dissociation and/or degradation of I{kappa}B{alpha} (23, 38, 39, 40, 41). In contrast, our results strongly indicate that E3330 does not affect I{kappa}B{alpha}, but rather, it influences NF-{kappa}B DNA-binding activity without affecting its translocation into the nucleus (Figs. 3Go and 4Go). Consistent with these results, E3330 suppressed NF-{kappa}B-mediated reporter gene expression to a similar extent in Jurkat cells, irrespective of whether PMA, TNF-{alpha}, PMA plus A23187, or PMA plus PHA was used to stimulate the cells (Fig. 1Go). E3330 may thus be classified as a novel type of anti-NF-{kappa}B drug.

We examined the specificity of E3330 inhibition by analyzing the effect of E3330 on the transcription from the promoters under the control of other transcription factors, Sp1, Oct, AP-1, NFAT, or STAT (Figs. 1GoB and 2). E3330 had no effect on Sp1, Oct, and AP-1. E3330 was not so effective in suppressing NFAT or STAT as compared with NF-{kappa}B (Fig. 2Go). In addition, we have previously showed that glucocorticoid-inducible transcription was not inhibited by, but rather was activated by E3330 (68). E3330, thus, selectively suppressed NF-{kappa}B-mediated transcription.

For efficient DNA binding, post-translational modification, especially phosphorylation of the p65 subunit, has been shown to be essential (25). E3330, however, did not significantly alter the PMA-induced phosphorylation of p65 (Fig. 5Go). We, therefore, postulated the presence of a cofactor-like activity for NF-{kappa}B in the nucleus that would act as the target of E3330 inhibition. This was supported by our finding that the 0.5 M KCl fraction, which was free from NF-{kappa}B, enhanced the DNA-binding activity of NF-{kappa}B. We propose that a nuclear factor interacts with NF-{kappa}B and that E3330 interferes with this interaction, based on the following facts: 1) The majority of E3330 and the NF-{kappa}B-enhancing activity are localized in the nucleus; 2) the pretreatment of the NF-{kappa}B-enhancing activity with E3330 eliminated the activity; and 3) E3330 bound a single polypeptide with a molecular mass of 40 kDa in the highly purified fraction containing the NF-{kappa}B-enhancing activity.

Recently, several reports have addressed the transcriptional mechanism of NF-{kappa}B-mediated gene expression, revealing that several cofactors are necessary to confer NF-{kappa}B-mediated expression of particular genes. E3330, therefore, might affect one of these or some other unknown cofactor activities. In the case of the IFN-ß promoter, the HMG I(Y) protein binds to the NF-{kappa}B site and augments the ability of NF-{kappa}B to bind to this site, resulting in enhanced transcription from the promoter, especially in response to virus infection (29). HMG I(Y) has been suggested to contact the minor groove of the A/T-rich inner region of the IFN-ß NF-{kappa}B site (29). Since the NF-{kappa}B site of HIV long terminal repeat does not contain an A/T-rich inner core, suppression of HIV promoter activity by E3330 seems unlikely to involve HMG I(Y). Bcl-3, a member of the I{kappa}B family, has recently been suggested to activate transcription through NF-{kappa}B sites. Two possible mechanisms have been proposed; an indirect mechanism by which Bcl-3 antagonizes inhibitory p50 homodimers (30, 31); and a direct mechanism by which Bcl-3 acts as an accessory factor, coupling with otherwise inert p52 homodimers to form competent transactivators (32). Our supershift experiments using Ab against Bcl-3, however, showed that Bcl-3 was not involved in the NF-{kappa}B-DNA complex formed in PMA-induced Jurkat cell nuclear extracts (data not shown). We, therefore, consider that our putative nuclear cofactor for NF-{kappa}B is different from either of these reported factors.

Recent studies also indicate that the transcriptional stimulation activity of NF-{kappa}B can be altered by interactions with other transcription factors. It has been shown that NF-{kappa}B physically and functionally interacts with members of the bZip family including C/EBP and AP-1 (34, 35). Other reports indicate that Sp1 acts synergistically with NF-{kappa}B to induce transcription of the HIV-1 long terminal repeat (36, 37). Since the transcription activity of HIV-1 promoter was suppressed by E3330, the interaction between NF-{kappa}B and Sp1 could be suppressed by E3330. However, E3330 clearly suppressed the enhanced transcription from the promoter, which contained only the NF-{kappa}B site but not the Sp1 site (see Fig. 2Go). Therefore, it seems unlikely that the interaction of NF-{kappa}B with Sp1 is a main target of E3330.

Another possibility is suggested by the observed redox regulation of NF-{kappa}B DNA-binding activity (26, 27, 28). Since E3330 is a quinone derivative, E3330 might take part in this reduction/oxidation regulation of NF-{kappa}B. In this respect, it would be interesting to see whether our nuclear factor possesses reducing activity.

In conclusion, we show that E3330 is a novel type of NF-{kappa}B inhibitor, which suppresses the DNA-binding activity of NF-{kappa}B by interfering with its functional interaction with a nuclear factor. The molecular cloning and characterization of this nuclear factor should reveal not only how E3330 inhibits the activation of NF-{kappa}B, but should also shed light on the activation mechanism of NF-{kappa}B.


    Footnotes
 
1 This work was supported by a grant-in-aid for Scientific Research on Priority Areas from the Ministry of Education, Science, Sports and Culture of Japan. Back

2 Address correspondence and reprint requests to Dr. Hiroshi Handa, Faculty of Bioscience and Biotechnology, Tokyo Institute of Technology, Midori-ku, Yokohama 226, Japan. Back

3 Abbreviations used in this paper: I{kappa}B, inhibitor of nuclear factor {kappa}B; NF-{kappa}B, nuclear factor {kappa}B; EMSA, electrophoretic mobility shift assay; Sp1, specificity protein 1; Oct, octamer-binding factor; AP-1, activator protein 1; NFAT, nuclear factor of activated T cells; [14C]E3330, 14C-labeled E3330; HGKE buffer, 20 mM HEPES-NaOH (pH 7.9), 20% glycerol, 0.1 M KCl, and 0.2 mM EDTA; PVDF, polyvinylidene difluoride; RLU, relative light unit; ISRE, interferon-stimulated response element; GAS, IFN-{gamma} activation site. Back

Received for publication March 3, 1997. Accepted for publication September 16, 1997.


    References
 Top
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 Introduction
 Materials and Methods
 Results
 Discussion
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