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The Journal of Immunology, 1998, 160: 5262-5266.
Copyright © 1998 by The American Association of Immunologists

Generation of an MHC Class II-Restricted T Cell Epitope by Extracellular Processing of Hepatitis {delta} Antigen1

Daniele Accapezzato*, Roberto Nisini{dagger}, Marino Paroli*, Guglielmo Bruno*, Ferruccio Bonino{ddagger}, Michael Houghton§ and Vincenzo Barnaba2,*

* Laboratory of Molecular and Cellular Immunology, Fondazione Andrea Cesalpino, Istituto I Clinica Medica, Università degli Studi di Roma "La Sapienza", Rome, Italy; {dagger} Laboratory of Medical Bacteriology and Mycology, Istituto Superiore di Sanità, Rome, Italy; {ddagger} Division of Gastroenterology, Ospedale Molinette, Turin, Italy; § Chiron Corporation, Emeryville, CA 94608; and Institute Pasteur-Cenci Bolognetti, Rome, Italy


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Hepatitis {delta} virus is a human pathogen that is responsible for a severe form of hepatitis affecting hepatitis B envelope Ag carriers. We have previously identified a series of hepatitis {delta} Ag (HDAg) epitopes that are recognized by CD4+ T cell clones isolated from infected subjects. Herein, we show that the presentation of soluble HDAg to CD4+ T cell clones that are specific for the HDAg(106–121) epitope was exceptionally unaffected by the inhibition of the APC-processing machinery when APCs were fixed with glutaraldehyde before Ag pulsing or treated with chloroquine or brefeldin A. Interestingly, 5 h of pulsing was strictly required for the efficient presentation of the HDAg(106–121) epitope by fixed APCs, suggesting that some form of extracellular processing had occurred. Indeed, fixed APCs were able to present HDAg after only 1 h of pulsing when HDAg was preincubated with serum for 5 h. More important, presentation was completely abrogated when Ag was previously incubated in medium containing serum in the presence of a potent inhibitor of trypsin activity such as the secretory leukoprotease inhibitor. These results show that HDAg may undergo extracellular processing and suggest that the generation of immunogenic epitopes directly by serum proteases could play a role in the immune response against hepatitis {delta} virus during infection.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
CD4+ T lymphocytes play a crucial role in the defense against viral pathogens mainly through their ability to produce soluble factors, exert cytotoxic activity, and provide help to B lymphocytes for the synthesis of protective Abs (1, 2, 3). CD4+ T cells usually recognize either extracellular Ags, which are captured by APCs via pinocytosis or endocytosis, or endogenously synthesized Ags, which have been degraded in peptides within endocytic compartments by proteolytic enzymes, assembled with MHC class II molecules, and finally expressed in the form of stable complexes on the surface of APCs (4).

Hepatitis {delta} virus (HDV)3 is a defective RNA virus that is responsible for severe forms of hepatitis in humans. HDV may either cause coinfection in combination with hepatitis B virus or may superinfect hepatitis B envelope Ag (HBenvAg) carriers (5, 6, 7). Hepatitis {delta} Ag (HDAg) is the only known protein product of HDV, existing as two isoforms of 24 and 27 kDa (p24 and p27, respectively) that are both crucial for virus assembly and infectivity (8). We have recently analyzed the HDAg-specific CD4+ T cell response in subjects infected with HDV and identified a number of epitopes that are relevant for this response using a panel of specific T cell clones (9). Here, we report the identification of an epitope, HDAg(106–121), which was generated through an extracellular cleavage mediated by serum proteases, and discuss the possible relevance of such a unusual pathway of Ag processing.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Reagents

The complete medium (CM) used in this study consisted of RPMI 1640 (Life Technologies, Grand Island, NY) supplemented with 2 µM L-glutamine, 1% nonessential amino acids, 1 µM sodium pyruvate, 100 U/ml penicillin, 100 µg/ml streptomycin (Flow Laboratories, Irvine, U.K.), and 10% human AB serum (HS) (Sigma-Aldrich, Milan, Italy).

Recombinant forms of both large (p27) and small (p24) HDAg were expressed in yeast (Saccharomyces cerevisiae), and the reconstituted proteins were at least 80% pure as judged by SDS-PAGE and Coomassie blue staining.

Synthetic peptides corresponding to amino acids 26–41 and 106–121 of the HDAg sequence (HDV genotype I) were kindly provided by Chiron Mimotopes (Clayton, Australia). Each peptide contained free amine N termini and free acid C termini and was purified by HPLC to >80% purity. Lyophilized peptides were reconstituted at 20 mg/ml in DMSO and diluted to 1 mg/ml with PBS.

Recombinant vaccinia viruses (VVs) expressing HDAg (VV-HDAg) and wild-type VV (VV-wt) as a control were used to infect APCs as previously described (9).

T cell clones and APCs

Two well-characterized T cell clones (TB238 and TB3) that were specific for HDAg(106–121) (KALENKKKQLSAGGKN) and HDAg(26–41) (KLEELERDLRKTKKKL), respectively, were used. As previously described, these clones were obtained from an HBenvAg carrier with HDV superinfection, autologous Epstein Barr-immortalized B lymphoblastoid cell lines (B-LCLs) while served as APCs (9). In particular, the TB238 clone recognized Ag in the context of multiple HLA-DR molecules, including DRB1*1101, DRB1*1102, DRB1*1201, DRB1*0101, DRB1*0701, DRB1*1401, and DRB5*0202, as previously described (9), so that the 106–121 peptide was defined as promiscuous (10). On the contrary, the TB3 clone recognized Ag in the context of DPB1*1701 (9). For Ag-presentation experiments, both T cell clones were tested against either HDAg-pulsed autologous or partially HLA-matched B-LCLs; Sweig cells (DRB1*1101) in particular were used as APCs for the TB238 clone, while the cell line LBS (DPB1*1701) was used for the TB3 clone (9).

T cell proliferation assay and Ag-processing experiments

Routine proliferation assays of T cell clones were performed by incubating 3 x 104 T cells for 48 h in 200 µl in 96-well flat-bottom microtiter plates (Falcon Labware, Oxnard, CA) in the presence or absence of autologous or partially HLA-matched B-LCLs, used as APCs (5 x 104), that were previously pulsed either with the entire HDAg for 6 h, or with HDAg-derived peptides for 1 h, or left unpulsed (1). At 18 h before the harvesting of cultures, 1 µCi [3H]thymidine was added, and the radioactivity incorporated by the cells measured by liquid scintillation counting.

In some experiments, APCs (autologous or partially HLA-matched B-LCLs) were treated with chloroquine or brefeldin A (Sigma-Aldrich). For chloroquine treatment, APCs were preincubated for 10 min in CM containing 80 µM chloroquine before Ag-pulsing (10 µg/ml p27 HDAg), and the same concentration of chloroquine was maintained throughout pulsing including washes. After treatment, APCs were fixed with 0.05% glutaraldehyde (Sigma-Aldrich) in PBS for 1 min. The reaction was stopped with 0.2 M glycine (Sigma-Aldrich) in PBS v/v for 10 min at room temperature. Cells were washed three times and incubated with T cells. For brefeldin A treatment, B-LCLs were incubated with 2 µM brefeldin A at the time of Ag-pulsing, fixed as described above, and used as APCs.

Extracellular processing experiments

In a series of experiments to determine whether extracellular processing was required for HDAg(106–121) peptide generation, glutaraldehyde-fixed APCs (autologous or partially HLA-matched B-LCLs) were pulsed with 10 µg/ml HDAg and washed after different pulsing times (10, 30, 60, 120, 240, and 300 min). After washing, APCs were incubated with responder T cells.

In some experiments, HDAg was incubated either in CM with FCS or HS at 10, 1, 0.1, and 0.01% or in serum-free medium for 5 h. Afterward, these HDAg preparations were used independently to pulse-fixed APCs in 10% CM-HS or CM-FCS for 1 h. APCs were then washed extensively and incubated with responder T cells.

Furthermore, to determine whether the HDAg(106–121) peptide could also be generated through the conventional processing pathways, nonfixed (live) autologous B-LCLs were either infected with VV-HDAg or VV-wt at a multiplicity of infection of 10 in CM or pulsed with soluble HDAg (10 µg/ml) in serum-free medium; this process was intended to rule out the possibility that soluble HDAg was extracellularly processed by serum proteases. Infected cells were incubated for 2 h at 37°C, washed twice, and then incubated overnight at 37°C in 5% CO2, while soluble HDAg-pulsed APCs were directly incubated overnight. On the following day, the cells were washed three times, irradiated at 12,000 rad, and used as APCs in a 3-day proliferation assay (9).

Treatment with protease inhibitors

In experiments that were set up in an attempt to identify the serum proteases possibly involved in extracellular HDAg processing, Ag (10 µg/ml p27 HDAg) was incubated with various protease inhibitors in 10% CM-FCS or CM-HS for 5 h at 37°C. Glutaraldehyde-fixed APCs were subsequently pulsed with those Ag preparations for 1 h at 37°C, extensively washed, and incubated with 105 TB238 T cells for the proliferation assay. As a control for nonspecific toxicity, B-LCLs were treated as described above, and their ability to present the HDAg(106–121) peptide (10 µg/ml) to the TB238 T cell clone was determined. The following inhibitors were used: EDTA (Sigma-Aldrich), leupeptin (Sigma-Aldrich), captopril (Sigma-Aldrich), phenanthroline (Sigma-Aldrich), Pefablock (Sigma-Aldrich), pepstatin A (Sigma-Aldrich), and recombinant human secretory leukocyte protease inhibitor (SLPI) (R&D Systems, Minneapolis, MN) (11). Each inhibitor was tested at four concentrations.


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Endocellular processing is not required for the generation of the HDAg(106–121) peptide

Experiments aimed at investigating the pathways required for the processing of the entire HDAg revealed that HDAg presentation to the HDAg(106–121)-specific TB238 T cell clone was not inhibited when autologous B-LCLs, used as APCs, were glutaraldehyde-fixed and then pulsed with p27 for 6 h. Figure 1GoA clearly shows that the TB238 clone proliferated in response to either fixed or nonfixed cells, whereas the control HDAg(26–41)-specific TB3 clone proliferated only in response to nonfixed pulsed APCs (Fig. 1GoB), as was previously demonstrated for a large panel of HDAg-specific CD4+ T cell clones that were tested in glutaraldehyde-fixation experiments (9). Comparable results were shown when allogeneic HLA-matched B-LCL Sweig cells (DRB1*1101), were used as APCs for the TB238 clone and allogeneic HLA-matched B-LCL LBS cells (DPB1*1701) were used for the TB3 clone (data not shown). Moreover, similar results were also obtained when the small (p24) HDAg form was used and by using five different HDAg(106–121)-specific T cell clones derived from different patients (data not shown). Glutaraldehyde fixation did not affect the presentation of the relevant peptide to Ag-specific T cells (see Fig. 6Go). In addition, neither chloroquine nor brefeldin A treatment of APCs inhibited HDAg presentation to the TB238 clone, but both drugs inhibited HDAg presentation to the control TB3 clone (Fig. 2Go). It is known that the endocytic presentation of Ags can be inhibited either by APC fixation, which blocks all forms of Ag internalization, or by lysosomotropic agents such as chloroquine, which inactivates endocytic proteases, or brefeldin A, which blocks the transport of newly synthesized proteins from the endoplasmic reticulum to the trans-Golgi, including the class II molecule/invariant chain complexes (12, 13, 14). Our data strongly suggest that the generation of the HDAg(106–121) peptide does not require processing within the cells. We also tested the capacity of fixed APCs pulsed at different times with HDAg to stimulate the TB238 clone. Figure 3Go shows that 5 h of pulsing was required for efficient Ag presentation by fixed APCs, suggesting that some form of extracellular processing had occurred and ruling out the possibility that HDAg preparation could contain preformed cleaved fragments. The latter possibility was further excluded by HPLC analysis (data not shown).



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FIGURE 1. HDAg presentation to the TB238 clone is not abrogated by glutaraldehyde-fixation of APCs. Autologous B-LCLs, which served as APCs, were fixed with 0.05% glutaraldehyde as described in Materials and Methods. Fixed ({circ}) or nonfixed (•) APCs were then pulsed with increasing concentrations of Ag, washed three times, and incubated with either the TB238 (A) or TB3 (B) clone, the last of which was used as a control. T cell proliferation was evaluated by measuring [3H]thymidine uptake in a standard proliferative assay and expressed as mean cpm of triplicate determinations.

 


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FIGURE 6. Extracellular HDAg processing is dependent upon serum proteases. p27 HDAg (10 µg/ml) or the 106–121 peptide (1 µg/ml) were incubated for 5 h in 0.01% CM-HS in the presence or absence of 50 µg/ml recombinant human SLPI. These preparations were used individually to pulse 2 x 105 fixed APCs for 1 h in CM-HS 10% or were left unpulsed. Then APCs were extensively washed and incubated with cloned TB238 cells. T cell proliferation was evaluated by measuring [3H]thymidine uptake in a standard proliferative assay and expressed as mean cpm of triplicate determinations.

 


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FIGURE 2. HDAg presentation to the TB238 clone is not inhibited by the previous treatment of APCs with either cloroquine or brefeldin A. Autologous B-LCLs, which served as APCs, were treated with chloroquine or brefeldin A during pulsing with or without p27 HDAg (10 µg/ml) as described in Materials and Methods. The B-LCLs were subsequently fixed, washed three times, and incubated with T cells. The TB3 clone was used as a control. T cell proliferation was evaluated by measuring [3H]thymidine uptake in a standard proliferative assay and expressed as mean cpm of triplicate determinations.

 


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FIGURE 3. Extracellular HDAg presentation by fixed APCs requires 5 h of pulsing. Fixed autologous B-LCLs, which served as APCs, were pulsed with HDAg (10 µg/ml) in 10% CM-FCS for 15, 30, 60, 120, or 300 min (•) or left unpulsed ({circ}). Next, the B-LCLs were extensively washed and incubated with the TB238 clone for the proliferative assay. T cell proliferation was evaluated by measuring [3H]thymidine uptake in a standard proliferative assay and expressed as mean cpm of triplicate determinations.

 
Finally, the capacity of CD4+ T cell clones to recognize exogenous and endogenous HDAg after classical processing into the endocytic compartments was investigated. We found that live (nonfixed) APCs that had previously been pulsed with Ag for 5 h in serum-free medium were able to present Ag to both HDAg(106–121)-specific T cells and the control clone, suggesting that the 106–121 epitope can be generated not only via extracellular processing but also via conventional endocytic processing following HDAg capture and internalization by APCs (Fig. 4GoA). Conversely, APCs infected with VV-HDAg were able to generate and present the 26–41 peptide but not the 106–121 peptide (Fig. 4GoB). However, control experiments revealed that APCs infected with VV-wt were able to present the relevant peptides to both of the clones used.



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FIGURE 4. The 106–121 epitope is generated during the endocytic processing of exogenous, but not endogenous HDAg. A, Live (nonfixed) autologous B-LCLs, which served as APCs, were pulsed with p27 HDAg (10 µg/ml) in serum-free medium for 5 h or left unpulsed. The B-LCLs were then irradiated, extensively washed, and incubated with 3 x 103 TB3 or TB238 clones in 10% CM-HS. B, APCs were previously infected with either recombinant VV-expressing HDAg or VV-WT, irradiated, washed, and then incubated with 3 x 103 TB3 or TB238 clones. As a control, APCs infected with VV-wt were either pulsed with the 26–41 (p5) or the 106–121 peptide (p15) (1 µg/ml) for 1 h or left unpulsed, irradiated, washed, and incubated with either TB3 or TB238 clones. T cell proliferation was evaluated by measuring [3H]thymidine uptake in a standard proliferative assay and expressed as mean cpm of triplicate determinations.

 
Extracellular HDAg processing is dependent upon serum proteases

To verify whether serum proteases were involved in extracellular HDAg processing, we have first individually pulse fixed autologous B-LCLs, used as APCs, with different preparations of HDAg that had previously been treated with medium containing increasing concentrations of HS. HDAg was incubated with different serum concentrations for 5 h, which was a length of time previously demonstrated to be required for extracellular Ag processing, and the different Ag preparations were subsequently incubated with fixed APCs for 1 h. Fixed APCs were able to present HDAg after 1 h of pulsing only when HDAg was preincubated with serum, and a 0.01% HS concentration was still sufficient to obtain presentation (Fig. 5Go). The same results were obtained using FCS. This observation suggests that the HDAg had been processed by serum proteases. Interestingly, attempts to block serum proteases with different inhibitors of serine proteases, metalloproteases, and trypsin (EDTA, leupeptin, captopril, phenanthroline, Pefablock, pepstatin A, and SLPI) demonstrated that only the latter, which is known to be a very strong trypsin inhibitor (11), affected extracellular Ag processing. Indeed, fixed APCs were drastically inhibited in their ability to present HDAg after 1 h of pulsing only when HDAg was preincubated in 0.01% CM-HS (a concentration previously demonstrated to be sufficient for the extracellular Ag processing) containing SLPI (50 µg/ml) for 5 h (Fig. 6Go); in no case did the other inhibitors, used at different concentrations, affected Ag presentation (data not shown). Experiments performed as a control for nonspecific toxicity showed that B-LCLs that had been treated with inhibitors as described above retained their ability to present the HDAg(106–121) peptide to the TB238 T cell clone (Fig. 6Go).



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FIGURE 5. Extracellular HDAg processing is dependent upon serum presence during pulsing. HDAg (10 µg/ml) was incubated for 5 h in CM containing serum at the following final concentrations: 0% ({circ}), 0.01% ({blacktriangleup}), 0.1% ({blacksquare}), 1% ({square}), and 10% ({triangleup}). These mixtures were used individually to pulse 2 x 105 fixed APCs for 1 h in CM containing HS or FCS at a final concentration of 10%. Next, APCs were extensively washed and incubated in increasing concentrations with cloned TB238 cells. T cell proliferation was evaluated by measuring [3H]thymidine uptake in a standard proliferative assay and expressed as mean cpm of triplicate determinations.

 

    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
We report herein the identification of one HDAg epitope, HDAg(106–121), that may be generated by an unusual form of extracellular processing for presentation to specific CD4+ T cells. Rare examples of extracellular processing by serum proteases have been reported for viral antigenic peptides that require degradation to smaller peptides to be presented by MHC class I molecules to specific CTLs (15, 16). Serum proteases have also been demonstrated to influence the antigenicity of soluble peptides depending upon their stability (17). The findings from our study demonstrate that an immunogenic peptide for CD4+ T cell recognition can be generated by the extracellular processing of an intact soluble protein such as HDAg. HDAg(106–121) is contained within a highly hydrophilic region of HDAg that may be more easily accessible by soluble proteases (18). The requirement of a significant time length (at least 5 h) for HDAg processing by fixed APCs to obtain the presentation of the HDAg(106–121) epitope suggests that some form of extracellular processing occurred and rules out the possibility that the entire HDAg could bind directly to MHC class II molecules without being previously processed, as demonstrated for fibrinogen or denatured proteins (19, 20). These data also exclude the possibility that our protein preparation could contain a contaminating amount of preformed 106–121 peptide; this possibility was further ruled out by HPLC analysis (data not shown).

The finding that fixed APCs were able to present HDAg after 1 h of pulsing only when HDAg was preincubated with serum for 5 h supports the idea that HDAg had been processed by serum proteases. Consistent with this possibility is the demonstration that a potent inhibitor of the trypsin activity, such as SLPI (10), was the only one of a panel of protease inhibitors that was able to block HDAg presentation to the TB238 clone, strongly suggesting that serum trypsin is involved in the generation of the HDAg(106–121) peptide during extracellular HDAg processing. The finding that the N-terminal cleavage site of the 106–121 epitope appears to be located after dibasic residues (RRRKALENKKKQLSAGGKN), that are typical of many enzymes including trypsin-like enzymes, and that the C terminus is not flanked by such residues supports the role of trypsin in extracellular HDAg processing and possibly suggests the combined action of two different protease enzymes. Moreover, a sequence comparison study of four different HDV isolates showed that the putative protease cleavage sites around the 106–121 peptide are almost totally conserved among the isolates (data not shown). Therefore, these data indicate that 106–121 peptide processing by serum may apply to HDV isolates in general and further suggest that at least two proteases may be involved in this extracellular-processing mechanism.

What could be the relevance of this phenomenon in vivo? We can envisage the following scenario. The initiation of HDV superinfection or coinfection (5) is absolutely dependent upon HBenvAg coating, which occurs in hepatitis B virus-infected cells such as hepatocytes or monocytes. These cells, which can act as APCs or scavengers, could cleave and regurgitate complex viral proteins (21) which, in turn, may be processed by serum enzymes to generate immunodominant peptides. The availability of large quantities of the 106–121 peptide after extracellular processing for binding to class II molecules could either enhance the presentation of this peptide to specific CD4+ T cells for mounting a protective response against HDV or play a crucial role in the pathogenesis of HDV-mediated liver disease (8). Indeed, the 106–121 peptide could bind to MHC class II molecules that are expressed on hepatocytes activated by inflammatory cytokines (22), causing extensive lysis of bystander class II+ hepatocytes by liver-infiltrating HDV-specific cytotoxic CD4+ T cells (1, 8). This mechanism could be relevant for HDV immunopathogenesis in a large cohort of patients, because 106–121 is a promiscuous, immunodominant peptide that is recognized by T cells in the context of multiple HLA-DR molecules (8, 9). In addition, HDAg(106–121)-specific CD4+ T cells, in contrast to control HDAg(26–41)-specific T cells, were stimulated only when the relevant peptide was generated by the extracellular or endocytic processing of exogenous HDAg and were not stimulated by the endocytic processing of endogenous HDAg. This discrepancy may occur either because the 106–121 peptide is not generated at all by the processing of endogenous HDAg, or because it is generated at subthreshold levels to act as a T cell epitope (23, 24, 25). It is tempting to hypothesize that the "exogenous" 106–121 epitope, which binds to several class II molecules (and possibly to some class I molecules) of all cells irrespective of virus infection, could act in different ways. Indeed, it may function both as a "blocking" peptide inhibiting MHC binding and the presentation of "endogenous" HDAg epitopes (26), and as a some kind of decoy inducing the exhaustion of HDAg(106–121)-specific T cells (27), and consequently facilitating the persistence of virus-infected cells. Alternatively, the extracellular processing of the 106–121 peptide by serum proteases may represent a mechanism of natural immunity against HDV, which would indirectly allow more efficient and prompt mounting of a protective, specific immune response through the rapid generation and presentation of this peptide. The viral load (low vs high), the type of APCs involved (professional vs nonprofessional), and the strength of the host-specific T cell response (high vs low memory T cell frequency) could all be crucial for the preferential establishment of either an immunity or an immunopathology state against HDV. In conclusion, ours is the first report demonstrating in humans the extracellular processing of a complex pathogen-derived Ag that is recognized by Ag-specific T cell clones, which have been isolated from virus-infected individuals. The extracellular-processing pathway for the presentation of HDV epitopes that is described herein provides clues for understanding HDV immunopathogenesis and suggests its possible relevance in vivo.


    Footnotes
 
1 This work was supported by Ministero della Sanità-Istituto Superiore di Sanità (I Progetto Epatite Virale and IX Progetto AIDS), Ministero dell’Università e della Ricerca Scientifica e Tecnologica 40% Grant 0511503097, I Progetto Associazione Italiana Sclerosi Multipla, and Fondazione Andrea Cesalpino. Back

2 Address correspondence and reprint requests to Dr. Vincenzo Barnaba, Istituto I Clinica Medica, Università di Roma "La Sapienza", Policlinico Umberto I, viale del Policlinico, 155, 00161 Roma, Italy. E-mail address: Back

3 Abbreviations used in this paper: HDV, hepatitis {delta} virus; HBenvAg, hepatitis B envelope Ag; HDAg, hepatitis {delta} Ag; CM, complete medium; HS, human AB serum; VV, vaccinia virus; wt, wild-type; B-LCL, B lymphoblastoid cell line; SLPI, secretory leukocyte protease inhibitor. Back

Received for publication October 22, 1997. Accepted for publication January 30, 1998.


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 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
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